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Chromosome 1
Chromosome 2
Chromosome 3
Chromosome 4
Chromosome 5
Position
Exon region
Intron region
UTR region
AGI
% Restriction to highly conserved TF binding sites (0-100)
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1 10 20 30 40 50 60 70 80 90 100
--------->
ANAC58
--------->
ANAC58
--------->
ATHB12
--------->
ATHB51
<---------
ICU4
<--------
ATHB1
------
----------->
GT1
-------->
HAHB4
------
<---------
DAG2
<---------
GLK1(2)
<----------
ID1
<----------
DOF2
--------->
ANAC58
--------->
AHL20(2)
------>
MYB46(1)
--------->
ANAC46
---------->
DOF2
<---------
ATHB51
------>
MYB83
<-----------
GT1
--------->
ANAC58
<---------
AHL20(2)
ttgaaaaaaaaacaccaactttttggtaaaactattttcacgataaacattttcaagaaagggattcaaattcttgggctaaataattgggacaagtaag
18002600
<------
ZmHOX2a(1)
--------->
ANAC58
--------->
PCF2
--------->
ARR14(2)
--------->
ZAT18
<---------
ARR14(2)
<x
<---------
ZAT18
------->
TEIL
<xx
<xxxxxxxxxxxxxxxxx
smallRNA(si3)
<xx
--------->
DAG2
<---------
TOE2(2)
<xx
--------->
AHL20(2)
--------->
ANAC46
<xxxxxxxxxxxxxxxx
smallRNA(se3)
-
--------->
ANAC58
--------->
YAB1
--------->
ANAC58
<xxxxxxxxxxxxxxxxxxxx
smallRNA(s2)
--------->
ANAC46
<---------
AHL20(2)
<---------
ALFIN1
<xxxxxxxxxxxxxxxx
smallRNA(le3)
<xx
--------->
ANAC58
--------->
AHL20(2)
<---------
REM1(2)
<---------
LBD16
-----------
--->
ANAC58
<-----------
GT1
---------->
DOF2
<---------
TOE1(2)
--------->
ZAT14
<xx
--->
ANAC58
----------->
GT1
--------->
AHL20(2)
<---------
ALFIN1
<xxxxxxxxxxxxxxxx
smallRNA(le3)
<xx
cattttcaagaaactacagttgtaatttacaaaattaataaaaaaaagg
tgcccacacgcaggatagaactacggaccttcagtttacaagactgacgct
18002700
<---------
ANAC58
<---------
ANAC58
*
TSS
<xxxxxxxxxxxxxxxx
smallRNA(i)
<xxxxxxxxxxxxxxxx
smallRNA(s)
<xxxxxxxxxxxxxxxxx
smallRNA(fl3)
<xxxxxxxxxxxxxxxxx
smallRNA(si3)
<xxxxxxxxxxxxxxxxx
smallRNA(se3)
<xxxxxxxxxxxxxxxxxx
smallRNA(fl3)
<xxxxxxxxxxxxxxxxx
smallRNA(fl3)
--------->
YAB1
<xxxxxxxxxxxxxxxxxx
smallRNA(si3)
<---------
AHL20(2)
<xxxxxxxxxxxxxxxxxx
smallRNA(se3)
--------->
AHL20(2)
<xxxxxxxxxxxxxxxxxxx
smallRNA(fl3)
------>
ZmHOX2a(1)
<xxxxxxxxxxxxxxxxxxx
smallRNA(si3)
--------->
TOE2(3)
<xxxxxxxxxxxxxxxxxxxx
smallRNA(i2)
------>
ZmHOX2a(2)
xxxxxxxxxxxxxxxxxxxxx
smallRNA(i2)
<------
ZmHOX2a(2)
xxxxxxxxxxxxxxxxx
smallRNA(i2)
--------->
AGP1
xxxxxxxxxxxxxx
smallRNA(fl3)
--------->
ARR11(3)
xxxxxxxxxxxxxxxxxxxxx
smallRNA(fl3)
<---------
GLK1(2)
-------->
MYB46(3)
<----------
DOF2
<---------
At4g35610
xxxxxxxxxxxxxx
smallRNA(se3)
----------->
ARR10
<
>
HVH21
<----------
DOF2
<----------
DOF2
<---------
AHL20(2)
--------->
ARR14(2)
---
xxxxxxxxxxxxxxx
smallRNA(si3)
<---------
AHL20(1)
<---------
ARR11(3)
<---------
YAB1
xxxxxxxxxxxxxxxxxx
smallRNA(se3)
--------->
AHL20(1)
<---------
ARR14(2)
<-----------
TBP
ctaccactgagctatacgggc
ttttgctttgtttcttcttactaaaatatttggattagttcagatccttatttaatgagaaagtttgtttttatagttt
18002800
----------->
GT1
--------->
ETT(2)
<---------
HSFB2a(2)
<---------
RVE1(1)
<------
ZmHOX2a(1)
----------->
GT1
--------->
GLK1(1)
--------->
ANAC46
<
--------->
ZAT14
--------->
ARR14(2)
<---------
TOE1(1)
<---
<-----------
GT1
<---------
ARR11(3)
<---------
TOE2(1)
-------
--------->
TOE2(3)
--------->
ARR11(3)
--------->
ANAC58
-------
----------
DOF2
<---------
ZAT14
<---------
GLK1(2)
--------->
YAB1
--------->
ANAC58
<------
------->
ID1
--------->
ANAC46
<---------
ARR14(2)
<------
ZmHOX2a(1)
<-------
TEIL
----
gtcttttcttaactatacaacactgttaaatctaatttcagatattctcgacagaaatgaaaatcacaggacaagtacgaggaacatacagtagtgaatc
18002900
--------->
MYB46(3)
<---------
ETT(1)
<----------
DOF2
<---------
DAG2
--------->
GLK1(2)
--------->
HSFB2a(1)
<<<<<<
ZML2
<---------
ARR14(2)
<---------
HSFB2a(1)
------
HSFB2a(2)
------->
TEIL
------>
MYB83
>
TEIL
<-------
TEIL
--------->
MYB52(1)
------>
MYB46(1)
-->
GLK1(2)
--------->
ARR14(2)
------->
GAMYB
--------->
AtMYB61
*
TSS
---
ARR14(2)
<---------
GLK1(2)
<-----------
GT1
--------->
MYB46(3)
------->
GAMYB
----->
HSFB2a(2)
<---------
YAB1
<---------
MYB52(2)
------->
GAMYB
--------->
ANAC46
<----------
DOF2
tagaactagaagtacagattctccttggaaatataacgaacctttccgaccaacaacgacatcaacttcatcaacga
catcaacttcatctttttatcga
18003000
<---------
AHL20(2)
----------->
GT1
--------->
AHL20(1)
<------
NtERF2
--------->
YAB1
--------->
LBD16
----------->
GT1
<---------
ICU4
<---------
LBD16
--------->
DAG2
--------->
ICU4
--------->
ALFIN1
----------->
GT1
--------->
At5g28300
--------->
YAB1
--------->
YAB1
----------------->
AGL1
--------->
AHL20(2)
---------->
DOF2
--------->
AHL20(2)
<-----
----------->
GT1
<---------
ANAC46
----------->
GT1
----------->
GT1
--------->
AHL20(2)
------
aaaatgaaaatacaagtggcggaatagggaaataaaactgttaaaatacgacctcggtaaaaagtaaaaataaaataaaaattagaacaatttcattagc
18003100
-------
-------
------>
MYB46(1)
------>
MYB83
--------->
MYB55(1)
<---------
ALFIN1
<------
ZmHOX2a(2)
--------->
MYB46(3)
<---------
MYB55(2)
--------->
CCA1(2)
----------->
RAV1(1)
<---------
ABI4(2)
=============================
HOX2a_HOX2a
--------->
MYB46(3)
================================
HOX2a_HOX2a
--------->
DEAR3(2)
--------->
ARR11(3)
--------->
At4g35610
--------->
PCF2
--------->
ARR14(2)
--------->
ANAC58
--------->
ARR14(2)
<---------
ARR11(3)
--------->
ANAC58
--------->
MYB46(3)
<---------
ARR14(2)
--------->
AGP1
<---------
MYB52(1)
--------->
ANAC46
--------->
ANAC58
<---------
ARR14(2)
--------->
LBD16
<-----------
GT1
--------->
ANAC46
---------->
DOF2
------>
ZmHOX2a(1)
<---------
ATHB12
--------->
ANAC58
----
At4g35610
--------->
ARR11(3)
<---------
ANAC46
<---------
HSFB2a(2)
------->
TEIL
<-----
--->
At4g35610
<---------
ARR11(3)
------>
ZmHOX2a(1)
--------->
HSFB2a(2)
--------->
MYB52(1)
tcagttaaagatccaaaaatctcattcacttcctcctccgtgagcaacaaatcgatcgagaaaccaataaacgacccgaaca
atgaacggaacccaccgt
18003200
--------->
YAB1
<---------
YAB1
===========================
HOX2a_HOX2a
--------->
YAB1
------->
GAMYB
--------->
MYB46(3)
--------->
ANAC55(2)
------>
ZmHOX2a(1)
--------->
TGA1a
--------->
TOE2(3)
--------->
ZAT2
====================================
HOX2a_HOX2a
--------->
At4g35610
------>
ZmHOX2a(2)
===============================
HOX2a_HOX2a
====================================
HOX2a_HOX2a
<------
ZmHOX2a(2)
=====================================
HOX2a_HOX2a
--------->
ARR11(3)
<------
ZmHOX2a(2)
<---------
ARR11(3)
--------->
ARR14(2)
<---------
MYB52(1)
<---------
ARR11(3)
<---------
SPL7
================================
MYC_MYB
<---------
RAP2.6(3)
<---------
ARR14(3)
<---------
ANAC58
<---------
TGA1a
<---------
ARR14(2)
<---------
ANAC55(2)
--------->
ARR14(3)
<---------
ANAC46
<---------
O2
--------->
ARR11(3)
<---------
ANAC58
---
<---------
ANAC58
==================
MYC_MYB
<------
ZmHOX2a(2)
-------
-->
DEAR3(1)
--------->
YAB1
<---------
ZAT2
-------->
P
==============
HOX2a_HOX2a
--------
-->
DREB2C(2)
<---------
YAB1
<---------
At4g35610
===================
HOX2a_HOX2a
------>
ZmHOX2a(1)
------
TGA1
<---------
ZAT6
--------->
SPL7
--------->
O2
<------
ZmHOX2a(1)
<---------
ANAC58
---
catcatcttcttcaactagtcttatcatgccgtaagatcacagctcaagtgactcaaccaggatcctcaacgatcatagcaatggcttcatcctccgagc
18003300
<------
NtERF2
------>
NtERF2
--------->
HSFB2a(2)
<---------
DEAR3(2)
<---------
HSFB2a(2)
<---------
DEAR3(1)
<---------
LBD16
--------->
DEAR3(1)
<---------------
AGL15
<---------
At1g77200
--------------->
AGL15
--------->
ATERF1(1)
<-----------------
AGL3
<------
NtERF2
<------
NtERF2
----------------->
AGL2
<-----------
HVH21
------>
NtERF2
<---------
ATHB12
--------->
TGA1a
--------->
ANAC46
--------->
MYB46(3)
<---------
TGA1a
--------->
ANAC58
<-----------------
AGL2
--------->
ANAC46
--------->
ANAC58
------>
MYB46(1)
--------->
ANAC55(2)
<---------
ATERF1(1)
------>
MYB83
<---------
REM1(2)
<--------
------>
ZmHOX2a(1)
-------->
P
----------->
HVH21
<--------
<---------
GLK1(1)
--------->
LBD16
=========================================
MYC_MYB
--------->
GLK1(1)
------>
NtERF2
--------->
ANAC58
<----------
DOF2
<---------
HSFC1(2)
------>
ANAC58
--------->
RAP2.6(2)
--------->
ANAC58
=========================
bZIP_DOF
-->
ANAC46
--------->
DAG2
<---------
GLK1(2)
--------->
ARR14(2)
================
bZIP_DOF
->
LBD16
---------->
DOF2
--------->
ARR14(2)
<---------
ARR14(2)
<-----------
HVH21
--------->
GLK1(2)
------>
ANAC58
--------->
DEAR3(1)
<---------
ALFIN1
---------->
DOF2
--------->
O2
--------->
HSFC1(2)
aagaattcctagcaaaaagccgcgccaatctctaccgattccctcactccaaccatttctgggactcaaagaccgcttcacgcgtcggcgagaagcttgg
18003400
<------
MYB46(1)
<------
MYB83
<---------
ANAC55(1)
<---------
ANAC58
<---------
ANAC58
<---------
MYB52(1)
<---------
ANAC46
<---------
ANAC46
<-----------
GT1
<---------
ARR11(3)
<---------
ANAC55(2)
<---------
TOE2(3)
------>
NtERF2
--------->
ARR11(3)
-
ANAC58
<---------
ZAT2
<---------
GLK1(1)
---------->
DOF2
<--------
-
ANAC58
--------->
ARR11(3)
--------->
GLK1(1)
--------->
AtMYB61
<-------
GAMYB
gttacgtttaagagagcttggtgttgacgtagtctccattgatgcagacgaagaaatctctcggcctattcaccatcgcaaaagagttcttccgttgttc
18003500
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AGI:
At2g43300.1
Description:
pre-tRNA. tRNA-Thr (anticodon: TGT)
Range:
from: 18002650
to: 18002721
Orientation: Reverse
Links:
TAIR
MIPS
AGI:
At2g43310.1
Description:
similar to unnamed protein product [Vitis vinifera] (GB:CAO64788.1); contains domain SSF53137 (SSF53137)
Range:
from: 18002978
to: 18003765
Orientation: Forward
Links:
TAIR
MIPS
Please cite the corresponding
publications
when using AthaMap.