Home Tools   - Search   - Colocalization   - Gene Analysis   - Gene Identification   - Small RNA Targets   - MicroRNA Targets Description Documentation Citations Downloads Publications History Contact Links Disclaimer	Search   Chromosome 1 Chromosome 2 Chromosome 3 Chromosome 4 Chromosome 5    Position Exon region Intron region UTR region AGI % Restriction to highly conserved TF binding sites (0-100)   Go to graphical and table display  1        10        20        30        40        50        60        70        80        90        100                                                                                --------->ANAC58                                                                              --------->ANAC58                                                                             ------->TEIL                                                                          --------->ANAC58                                        ----------------->AGL3            --------->ANAC58                                     --------->At4g35610          --------->ANAC46               <----------DOF2   --------->MYB52(1)               --------->ANAC58             <-----      --------->ANAC55(2)        <-----------GT1                  --------->ANAC58            >>>>>>>      <---------ANAC55(2)  <------ZmHOX2a(1)                     <---------LBD16              <<<<<<< ------ZmHOX2a(1)   <------ZmHOX2a(1)<---------At4g35610 <----------DOF2  <---------MYB52(2)  >>>>>>>   aaggagataagtattccctttaggaactaggagattaacagctccatttgaagaacatgctttcttccacgcattcacgaacgcctaaacaatgcatgca  17470800     <---------ICU4    --------->ICU4    <---------YAB1                            <---------AHL20(2)  <--------HAHB4                              --------->AHL20(1)                     <-----------HVH21  --------->ATHB12               --------->YAB1                                   <---------ANAC58 <------ZmHOX2a(2)           <---------AHL20(1)                                   <---------ANAC46 ----AtLEC2                  <---------AHL20(2)             --------->AHL20(2) --------->TOE2(2)<---- >>>FUS3                     --------->AHL20(2)             <---------AHL20(2)<---------At4g35610 <<<FUS3                     --------->AHL20(1)   --------->AHL20(2)          ----------->RAV1(2) >>>ABI3                 <---------YAB1       --------->AHL20(2)<---------ANAC46  <---------ANAC58   tggatcattagtactaaaaacagttttctaattaattatacgatgaaataaaataaaaacatttttatgtgtatatatacacctgcgtgtcatcggtttt  17470900                                               --------->LBD16                                               <------NtERF2                                              --------->ANAC58                                             --------->ZAT18                                             <---------LBD16                                             <---------ZAT18                                        <------MYB83                                      <--------P                                     <-------GAMYB                                      ------>ZmHOX2a(1)                                    <---------MYB46(3)                             --------->bZIP60(1)                                    --------->MYB111(2)                            <---------bZIP60(1)                    --------->YAB1  --------->MYB55(2)                          <---------MYB52(1)             ----------------->AGL2 --------->MYB52(2)                         <-----------HVH21          <---------At4g35610      <---------AtMYB61                           --------->LBD16          --------->At4g35610 --------->MYB52(1) ---------->DOF2              --------->ANAC55(2)       <---------MYB52(1)   <---------MYB52(2)--------->ANAC58                <---------ANAC46      <----------DOF2     --------->ZAT6<------MYB46(1)                       <---------ANAC55(2) -------GT1  ----------------->AGL3--------->ALFIN1                          <---------LBD16       --   tccatctcctttagctccaaaatcagaaacactaacggtggttggagtccgcaaagaggctcttacaaaacttctcaatcccgtgatgtcctctcttcgc  17471000                                                                                                -----                                                                                             --------                                                                                             <-------                                                                                            ---------                         --------->YAB1                                                     ---------                      <----------DOF2                                                       <--------                     <---------DAG2                                                         =========                   ------->TEIL                                                             ---------             <---------ARR14(2)                                                             <--------             --------->ARR14(2)                                  <----------DOF2            ---------        --------->MYB52(1)  --------->YAB1<-------TEIL <---------YAB1--------->ANAC46  ---------->DOF2 ------->ATHB12   <-----------GT1 ----------->GT1     <---------GLK1(2)              ---------->DOF2   ttgattaagctatcggatttgaaccttttataagaatggtcatatacattagggctgattcttgaagctttacaccatgagaacatcaaaagagcccata  17471100        --------->DOF5.7(2)        --------->At5g28300       ----------->GT1    --------->MYB52(1)                                               --------->DAG2 <------ZmHOX2a(1)                                              <---------HSFB2a(2) ---->YAB1         <------MYB46(1)                              --------->HSFB2a(2) ------->AGL15     <------MYB83                                 <---------------AGL15             --- --------AGL15    --------->MYB111(1)                          <---------ANAC46                 <---- ------>AGL15     <---------MYB46(3)                           <---------ANAC58                 <---- -------->AGL2    --------->MYB111(2)                          <-----------------AGL2          ------ -------AGL15     --------->MYB46(2)                 <-----------GT1---------->DOF2            <----- ===============================================================================MADS_MADS      ------ -------->AGL3    --------->MYB59      --------->ANAC58   <-----------RAV1(1)                  ------ ---------AGL1   <--------P------->GAMYB   <---------GLK1(1)   <---------ANAC58                ------ -------->AGL1<---------TOE2(3)        --------->ANAC58 <----------DOF2                       <------   ataggaaaacggtaacaaggttggtacaacgggccattggcaaggaaatgtgttttttctttgttgctggaaaaggaatgctgtcgtttttgggcagtag  17471200                                                                            ------->MYC3                                                                            <-------PIF4                                                                            <-------MYC3                                                                            ------->PIF4                                                                            ------->MYC2                                                                            <-------PIF5                                                                            ------->MYC4                                                                            <-------MYC4                                                                            ------->PIF5                                                                            <-------MYC2                                                                           --------->O2                                                                           ==========================      --------->ATHB12                                                     <---------O2 ------>ALFIN1                                         <------------CBF    --------->TGA1a --MYB83                                 <----------DOF2                   <---------TGA1a --MYB46(1)<---------TOE2(3)            <---------ANAC58                   <---------ANAC55(2) --->MYB111(1)                          <---------ANAC58                   <---------ANAC46       --- ----MYB46(3)                          *TSS          <---------YAB1--------->ALFIN1<---------AHL20(2) --->MYB46(2)                      <-----------RAV1(1)--------->ATHB12    <-------TEIL        ------- --->MYB111(2)                  ------>ZmHOX2a(1)    <---------AHL20(2) <------NtERF2  --------->ANAC46 --->MYB55(2)          <---------AHL20(2)============================================bZIP_DOF<------- ---MYB55(1)<---------YAB1   ---------->ID1  ---------->ID1      --------->ALFIN1<-----------TBP-----   gtggagaatgtttgatgtttgtgaattttttgtccttgtgttgctttgtttttttttaattggagaagtgtggaggcacgtgtatttataggcaaatcaa  17471300                                                                    --------->O2<----------DOF2                                                                    --------->ANAC55(2)    ----------->GT1                                                 <---------ANAC46   ----------->GT1          <----------DOF2                         --------->ANAC55(1)          ----   <---------ANAC46  <---------ANAC58                      <---------YAB1 --------->ZAT6         <--- ======bZIP_DOF      <---------ANAC46            <---------ANAC58   --------->ANAC58             ---- ------>DAG2         <---------ANAC58            <---------ANAC46   --------->ANAC58             <--- -->YAB1       --------->MYB59                   <---------ANAC58   <---------ANAC55(2)         ----- --ATHB12      <---------TOE2(3)                 ----------->GT1<-----------HVH21            -------- ----->DOF2    <---------TOE1(3)       <---------TOE1(1)   <---------TOE2(3)    <---------DAG2  <----   aagggacgtttaaaatttaggtttcttgagcttgaatgagttcgaggtatggagtgaaattgagattgtcacgtaaacactactttaggcatctataatt  17471400                                                                     <---------AHL20(2)                                                              --------->ARR11(3)      --------->TOE2(3)                                   <---------AHL20(1)   <-----------GT1                                        --------->AHL20(1)  <---------AHL20(2)                                     --------->AHL20(2) ----->AHL20(1)                                      <---------AHL20(2) ------AHL20(1)                                      <---------AHL20(1) ----->AHL20(2)                                      --------->AHL20(2)     ------>ZmHOX2a(1) ------AHL20(2)                                      --------->AHL20(1)<-----------GT1 ---->AHL20(2)                                    --------->YAB1    --------->YAB1                <-- ->YAB1     <-----------GT1 <-------TEIL       <----------DOF2<---------ARR11(3)              <------ -----AHL20(2)     <----------DOF2        ------>ZmHOX2a(1)  <---------CCA1(2)                -------   ttattttatcttattttcttcctttagagtttcatattgtaatcctctcctttaataaaatatatatctatattaatcctctctctatctcattgtttaa  17471500                                                             --------->HSFC1(2)                                                         --------->ANAC58                                                     --------->HSFB2a(2)                                                     <---------HSFB2a(2)         --------->ARR11(3)                                               <---------ARR14(2)      <---------TOE2(3)                                               <---------TOE1(2)       <---------TOE1(3)    ----------->GT1                            --------->ARR14(2)   <----------DOF2            <----- -------AHL20(2)                            --------->YAB1   <---------HSFC1(2)<---------TOE1(3) ---AHL20(2)                           <---------ANAC58  --------->ANAC46      <---------TOE2(3) -->AHL20(2)                           <---------ANAC58  --------->ANAC58<------ZmHOX2a(1)  <--------   ttcatttagttaaaaatttagttgtctcttagcgagaccatgcttatcgtattttctgcaagaaacatcgcttaaggatttaaggtattgaagtttactt  17471600                                                                                                    <                                   <---------AHL20(2)                                           <----                        --------->At4g35610                                                  --------                        <---------At4g35610                                               --------->AHL20(2)      <---------AHL20(2)--------->ZAT2                                                    <---------ARR11(3)  <---------DAG2        <---------ZAT2        <---------WOX13(1)                        --------->ANAC58  <----------DOF2   <-----------HVH21  <---------MYB46(3)       <-----------GT1         --------->ANAC58 <---------DAG2    <---------ZAT6  --------->ATHB12     --------->ZAT18                 --------->ANAC46 -----DOF2 <---------AHL20(2)     <---------AHL20(2)    <---------ZAT18         <-----------GT1 <---- ---GT1<---------AHL20(2)      --------->AHL20(2)    ---------->DOF2  ------->TEIL  ------>ZmHOX2a(1)   tccccttttttattttatctagtgtcagctcgattatttattggttagattgactaaatgcactatatactgtatgtggatttttcctccaagaaattat  17471700  Previous    Next  AGI:  At2g41850.1    Description:  PGAZAT (POLYGALACTURONASE ABSCISSION ZONE A. THALIANA); polygalacturonase. similar to ADPG1 (endo-polygalacturonase 1), polygalacturonase [Arabidopsis thaliana] (TAIR:AT3G57510.1); similar to endopolygalacturonase [Brassica napus] (GB:CAC05657.1); contains InterPro domain Pectin lyase fold (InterPro:IPR012334); contains InterPro domain Parallel beta-helix repeat (InterPro:IPR006626); contains InterPro domain Glycoside hydrolase, family 28; (InterPro:IPR000743); contains InterPro domain Pectin lyase fold/virulence factor (InterPro:IPR011050) Range:  from: 17468733    to: 17471239    Orientation: Reverse Links:  TAIR  MIPS      Please cite the corresponding publications when using AthaMap.
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