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Chromosome 1
Chromosome 2
Chromosome 3
Chromosome 4
Chromosome 5
Position
Exon region
Intron region
UTR region
AGI
% Restriction to highly conserved TF binding sites (0-100)
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1 10 20 30 40 50 60 70 80 90 100
--------->
ANAC58
--------->
ANAC58
------->
TEIL
--------->
ANAC58
----------------->
AGL3
--------->
ANAC58
--------->
At4g35610
--------->
ANAC46
<----------
DOF2
--------->
MYB52(1)
--------->
ANAC58
<-----
--------->
ANAC55(2)
<-----------
GT1
--------->
ANAC58
>>>>>>>
<---------
ANAC55(2)
<------
ZmHOX2a(1)
<---------
LBD16
<<<<<<<
------
ZmHOX2a(1)
<------
ZmHOX2a(1)
<---------
At4g35610
<----------
DOF2
<---------
MYB52(2)
>>>>>>>
aaggagataagtattccctttaggaactaggagattaacagctccatttgaagaacatgctttcttccacgcattcacgaacgc
ctaaacaatgcatgca
17470800
<---------
ICU4
--------->
ICU4
<---------
YAB1
<---------
AHL20(2)
<--------
HAHB4
--------->
AHL20(1)
<-----------
HVH21
--------->
ATHB12
--------->
YAB1
<---------
ANAC58
<------
ZmHOX2a(2)
<---------
AHL20(1)
<---------
ANAC46
----
AtLEC2
<---------
AHL20(2)
--------->
AHL20(2)
--------->
TOE2(2)
<----
>>>
FUS3
--------->
AHL20(2)
<---------
AHL20(2)
<---------
At4g35610
<<<
FUS3
--------->
AHL20(1)
--------->
AHL20(2)
----------->
RAV1(2)
>>>
ABI3
<---------
YAB1
--------->
AHL20(2)
<---------
ANAC46
<---------
ANAC58
tggatcattagtactaaaaacagttttctaattaattatacgatgaaataaaataaaaacatttttatgtgtatatatacac
ctgcgtgtcatcggtttt
17470900
--------->
LBD16
<------
NtERF2
--------->
ANAC58
--------->
ZAT18
<---------
LBD16
<---------
ZAT18
<------
MYB83
<--------
P
<-------
GAMYB
------>
ZmHOX2a(1)
<---------
MYB46(3)
--------->
bZIP60(1)
--------->
MYB111(2)
<---------
bZIP60(1)
--------->
YAB1
--------->
MYB55(2)
<---------
MYB52(1)
----------------->
AGL2
--------->
MYB52(2)
<-----------
HVH21
<---------
At4g35610
<---------
AtMYB61
--------->
LBD16
--------->
At4g35610
--------->
MYB52(1)
---------->
DOF2
--------->
ANAC55(2)
<---------
MYB52(1)
<---------
MYB52(2)
--------->
ANAC58
<---------
ANAC46
<----------
DOF2
--------->
ZAT6
<------
MYB46(1)
<---------
ANAC55(2)
-------
GT1
----------------->
AGL3
--------->
ALFIN1
<---------
LBD16
--
tccatctcctttagctccaaaatcagaaacactaacggtggttggagtccgcaaagaggctcttacaaaacttctcaatcccgtgatgtcctctcttcgc
17471000
-----
--------
<-------
---------
--------->
YAB1
---------
<----------
DOF2
<--------
<---------
DAG2
=========
------->
TEIL
---------
<---------
ARR14(2)
<--------
--------->
ARR14(2)
<----------
DOF2
---------
--------->
MYB52(1)
--------->
YAB1
<-------
TEIL
<---------
YAB1
--------->
ANAC46
---------->
DOF2
------->
ATHB12
<-----------
GT1
----------->
GT1
<---------
GLK1(2)
---------->
DOF2
ttgattaagctatcggatttgaaccttttataagaatggtcatatacattagggctgattcttgaagctttacaccatgagaacatcaaaagagcccata
17471100
--------->
DOF5.7(2)
--------->
At5g28300
----------->
GT1
--------->
MYB52(1)
--------->
DAG2
<------
ZmHOX2a(1)
<---------
HSFB2a(2)
---->
YAB1
<------
MYB46(1)
--------->
HSFB2a(2)
------->
AGL15
<------
MYB83
<---------------
AGL15
---
--------
AGL15
--------->
MYB111(1)
<---------
ANAC46
<----
------>
AGL15
<---------
MYB46(3)
<---------
ANAC58
<----
-------->
AGL2
--------->
MYB111(2)
<-----------------
AGL2
------
-------
AGL15
--------->
MYB46(2)
<-----------
GT1
---------->
DOF2
<-----
===============================================================================
MADS_MADS
------
-------->
AGL3
--------->
MYB59
--------->
ANAC58
<-----------
RAV1(1)
------
---------
AGL1
<--------
P
------->
GAMYB
<---------
GLK1(1)
<---------
ANAC58
------
-------->
AGL1
<---------
TOE2(3)
--------->
ANAC58
<----------
DOF2
<------
ataggaaaacggtaacaaggttggtacaacgggccat
tggcaaggaaatgtgttttttctttgttgctggaaaaggaatgctgtcgtttttgggcagtag
17471200
------->
MYC3
<-------
PIF4
<-------
MYC3
------->
PIF4
------->
MYC2
<-------
PIF5
------->
MYC4
<-------
MYC4
------->
PIF5
<-------
MYC2
--------->
O2
==========================
--------->
ATHB12
<---------
O2
------>
ALFIN1
<------------
CBF
--------->
TGA1a
--
MYB83
<----------
DOF2
<---------
TGA1a
--
MYB46(1)
<---------
TOE2(3)
<---------
ANAC58
<---------
ANAC55(2)
--->
MYB111(1)
<---------
ANAC58
<---------
ANAC46
---
----
MYB46(3)
*
TSS
<---------
YAB1
--------->
ALFIN1
<---------
AHL20(2)
--->
MYB46(2)
<-----------
RAV1(1)
--------->
ATHB12
<-------
TEIL
-------
--->
MYB111(2)
------>
ZmHOX2a(1)
<---------
AHL20(2)
<------
NtERF2
--------->
ANAC46
--->
MYB55(2)
<---------
AHL20(2)
============================================
bZIP_DOF
<-------
---
MYB55(1)
<---------
YAB1
---------->
ID1
---------->
ID1
--------->
ALFIN1
<-----------
TBP
-----
gtggagaatgtttgatgtttgtgaattttttgtccttgt
gttgctttgtttttttttaattggagaagtgtggaggcacgtgtatttataggcaaatcaa
17471300
--------->
O2
<----------
DOF2
--------->
ANAC55(2)
----------->
GT1
<---------
ANAC46
----------->
GT1
<----------
DOF2
--------->
ANAC55(1)
----
<---------
ANAC46
<---------
ANAC58
<---------
YAB1
--------->
ZAT6
<---
======
bZIP_DOF
<---------
ANAC46
<---------
ANAC58
--------->
ANAC58
----
------>
DAG2
<---------
ANAC58
<---------
ANAC46
--------->
ANAC58
<---
-->
YAB1
--------->
MYB59
<---------
ANAC58
<---------
ANAC55(2)
-----
--
ATHB12
<---------
TOE2(3)
----------->
GT1
<-----------
HVH21
--------
----->
DOF2
<---------
TOE1(3)
<---------
TOE1(1)
<---------
TOE2(3)
<---------
DAG2
<----
aagggacgtttaaaatttaggtttcttgagcttgaatgagttcgaggtatggagtgaaattgagattgtcacgtaaacactactttaggcatctataatt
17471400
<---------
AHL20(2)
--------->
ARR11(3)
--------->
TOE2(3)
<---------
AHL20(1)
<-----------
GT1
--------->
AHL20(1)
<---------
AHL20(2)
--------->
AHL20(2)
----->
AHL20(1)
<---------
AHL20(2)
------
AHL20(1)
<---------
AHL20(1)
----->
AHL20(2)
--------->
AHL20(2)
------>
ZmHOX2a(1)
------
AHL20(2)
--------->
AHL20(1)
<-----------
GT1
---->
AHL20(2)
--------->
YAB1
--------->
YAB1
<--
->
YAB1
<-----------
GT1
<-------
TEIL
<----------
DOF2
<---------
ARR11(3)
<------
-----
AHL20(2)
<----------
DOF2
------>
ZmHOX2a(1)
<---------
CCA1(2)
-------
ttattttatcttattttcttcctttagagtttcatattgtaatcctctcctttaataaaatatatatctatattaatcctctctctatctcattgtttaa
17471500
--------->
HSFC1(2)
--------->
ANAC58
--------->
HSFB2a(2)
<---------
HSFB2a(2)
--------->
ARR11(3)
<---------
ARR14(2)
<---------
TOE2(3)
<---------
TOE1(2)
<---------
TOE1(3)
----------->
GT1
--------->
ARR14(2)
<----------
DOF2
<-----
-------
AHL20(2)
--------->
YAB1
<---------
HSFC1(2)
<---------
TOE1(3)
---
AHL20(2)
<---------
ANAC58
--------->
ANAC46
<---------
TOE2(3)
-->
AHL20(2)
<---------
ANAC58
--------->
ANAC58
<------
ZmHOX2a(1)
<--------
ttcatttagttaaaaatttagttgtctcttagcgagaccatgcttatcgtattttctgcaagaaacatcgcttaaggatttaaggtattgaagtttactt
17471600
<
<---------
AHL20(2)
<----
--------->
At4g35610
--------
<---------
At4g35610
--------->
AHL20(2)
<---------
AHL20(2)
--------->
ZAT2
<---------
ARR11(3)
<---------
DAG2
<---------
ZAT2
<---------
WOX13(1)
--------->
ANAC58
<----------
DOF2
<-----------
HVH21
<---------
MYB46(3)
<-----------
GT1
--------->
ANAC58
<---------
DAG2
<---------
ZAT6
--------->
ATHB12
--------->
ZAT18
--------->
ANAC46
-----
DOF2
<---------
AHL20(2)
<---------
AHL20(2)
<---------
ZAT18
<-----------
GT1
<----
---
GT1
<---------
AHL20(2)
--------->
AHL20(2)
---------->
DOF2
------->
TEIL
------>
ZmHOX2a(1)
tccccttttttattttatctagtgtcagctcgattatttattggttagattgactaaatgcactatatactgtatgtggatttttcctccaagaaattat
17471700
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AGI:
At2g41850.1
Description:
PGAZAT (POLYGALACTURONASE ABSCISSION ZONE A. THALIANA); polygalacturonase. similar to ADPG1 (endo-polygalacturonase 1), polygalacturonase [Arabidopsis thaliana] (TAIR:AT3G57510.1); similar to endopolygalacturonase [Brassica napus] (GB:CAC05657.1); contains InterPro domain Pectin lyase fold (InterPro:IPR012334); contains InterPro domain Parallel beta-helix repeat (InterPro:IPR006626); contains InterPro domain Glycoside hydrolase, family 28; (InterPro:IPR000743); contains InterPro domain Pectin lyase fold/virulence factor (InterPro:IPR011050)
Range:
from: 17468733
to: 17471239
Orientation: Reverse
Links:
TAIR
MIPS
Please cite the corresponding
publications
when using AthaMap.