Home Tools   - Search   - Colocalization   - Gene Analysis   - Gene Identification   - Small RNA Targets   - MicroRNA Targets Description Documentation Citations Downloads Publications History Contact Links Disclaimer	Search   Chromosome 1 Chromosome 2 Chromosome 3 Chromosome 4 Chromosome 5    Position Exon region Intron region UTR region AGI % Restriction to highly conserved TF binding sites (0-100)   Go to graphical and table display  1        10        20        30        40        50        60        70        80        90        100                                                   <------ZmHOX2a(1)                                          --------->ANAC58                                          --------->ANAC46                                          --------->ANAC58                                          --------->AtLEC2                                       ----------->HVH21                                       --------->TGA2(2)                                      <-----------HVH21                                     --------->ANAC58                                     <---------ANAC55(2)                                     --------->ANAC46                                              --                                     --------->ANAC58                                --------->ZAT14                   <-------TEIL     --------->SPL7                                   <---------ZAT14        ---------->DOF2         --------------->AtSPL3                             --------->ANAC46-- -------PIF5   <---------------AtSPL8--------->ANAC55(2)              --------->ANAC46     --------->At4g35610 ------>PIF5  <------ZmHOX2a(1) <---------------AtSPL3         <-------TEIL      <---------ALFIN1  --   cacggggagagaaagaggaggtacatgaagagaaacagtacgtcacgcagaggagaaagtttgggttcatacacattacacttccactgcagaagcagag  16919500                                                            <---------TOE2(3)                                                         <---------YAB1                                          <---------------AGL15                                         <-----------------AGL3                                         ----------------->AGL3                                         <-----------------AGL2                               ------>MYB83           ------>ZmHOX2a(1)                               ------>MYB46(1)        --------->ICU4 ------->ANAC58              --------->AtMYB61        <---------YAB1        <<<<<<<<<MYB2 ------->ANAC58           <---------ALFIN1--------------->AGL15         <---------WOX13(1)        <-- --------->GT1<----------DOF2--------->DEAR3(1)    ---------->ID1    <---------YAB1    <<<<<<<<<<MYB80   caagaaaaaatccagcctttaaaaacaaacacctcccactatttctatttttagtccttattaatgtgtttgtaattggttttcattttggtttgatatg  16919600            <---------LBD16        <----------DOF2        <---------DAG2       <---------ANAC58                                  --------->YAB1       <---------ANAC58                                  --------->TOE2(3)    <---------WOX13(1)                                  <<<<<<<<<ARR1   <---------ANAC58        <---------MYB46(3)           <<<<<<<<<ARR2      --------->YAB1   <---------ANAC58    <---------YAB1              <-----------GT1     --------->AHL20(2)     <------  --------->ATHB12<----------DOF2            <---------AHL20(2)   --------->AHL20(2)          ------- <---------YAB1<---------MYB52(1)            --------->AHL20(2)   <---------AHL20(2)    ------->TEIL -------ANAC46--------->LBD16            --------->AHL20(2)     <----------DOF2    <----------DOF2   gtgttgattgcttttccggtcttttatatttgttgattttccaaaaaataaatatacaatcttagtctttaaataaaacataatgctttgaatctaatga  16919700                                                      <---------YAB1                           ------                                                   <---------YAB1                              ------                                              <---------ARR14(2)        ------->TEIL         <-------                     ----------->GT1      --------->ZAT14               <-----------ARR10 ------>MYB83  <----------ID1  --------->ATHB12        <---------ZAT14               <---------ARR11(3)------>MYB46(1) ---ATHB12       <---------YAB1           --------->At4g35610          <---------CCA1(2)<---------MYB59 -->ICU4   <---------YAB1          --------->YAB1----------->GT1---------->DOF2   <---------ATHB12   gtaaacaacaaatttgatagtgattgtaaaacaacaatgaaaactgcagaaatgtgattactggataaaagctgtatcttagcaatgaaaccgaaccaaa  16919800                                                                                  <------ZmHOX2a(2)                                                                                  <---------GLK1(1)                                                                                  --------->GLK1(1)                                                                                 <---------ARR14(2)                                                                                 <---------ARR11(3)                                                                                 --------->ARR11(3)                                                                                 <---------AGP1                                                                                 --------->ARR14(2)                                                                                 <---------ARR14(3)                                  --------->ALFIN1                           <---------ZAT2                                <---------ANAC58                             <---------At4g35610                                <---------ANAC46                             --------->At4g35610                                <---------O2                               <-----------RAV1(2)                                --------->ANAC55(2)                       --------->TGA2(2)                                <---------bZIP60(1)                      <-----------HVH21                                <---------bZIP60(2)                      <-----------TGA1                                <---------ANAC55(2)                     --------->ANAC58                                <---------ANAC58                        =============================                                --------->bZIP60(1)                     --------->TGA1a                                <---------TGA1a                         <---------O2                                --------->O2                            --------->O2                                --------->TGA1a                         --------->ANAC58                               ----------->STF1                         --------->bZIP60(2)                               <-----------------------TaNAC69(2)       --------->ANAC46                             ----------->TGA1                       <<<<<<<<<GATA-3                             ----------->HVH21    ----------->HVH21 <<<<<<<<<GATA-4           -------                         <---------ATHB12       --------->ZAT2      <<<<<<<<<GATA-2         <--------         --------->ATHB12------------>CBF       --------->At4g35610 <<<<<<<<<GATA-1------>ZmHOX2a(2) >MYB46(1)         <-----------GT1----------->HVH21           --------->TOE2(3) <---------CCA1(2) >MYB83 <---------YAB1  ------>MYB46(1)         <---------At4g35610--------->ARR14(2)     --------->YAB1 --MYB59--------->ICU4  ------>MYB83   <------NtERF2    --------->ANAC46<---------TGA1a  <---------YAB1   ttgaaccaagatgattagaataaaccaaacaatgacgtggcagagatagtagctgactaggcaacgttgaatccacgtcagcagatctcttatcatcaaa  16919900     <---------CCA1(2)                     ---------->DOF2      ------>ZmHOX2a(2)         <---------WRKY18(1)  <-----------GT1                <---------ALFIN1              <------ZmHOX2a(2)         ----------->HVH21 ====bZIP_DOF                  ------->GAMYB                  <---------AGP1   <-----------GT1 --->DOF2                 --------->DOF5.7(2)                 <---------ARR11(3)         --------->WRKY12 -YAB1                 *TSS <---------DOF5.7(2)               --------->ARR11(3)    <---------ALFIN1   gttttttctatcttcttcgttcgaagacgttaaccccatctcgttgaaagagagaagatgctaagatctcaaaacagagtataacaacaccttgacctcg  16920000                            ========================HOX2a_HOX2a                            ------>ZmHOX2a(2)                           <---------At4g35610                           --------->At4g35610                           <------ZmHOX2a(2)                           =========================HOX2a_HOX2a                          --------->ARR11(3)                          <---------ARR11(3)                          <---------ARR14(2)                          <---------AGP1                          --------->ARR14(2)                                                      ---                          --------->GLK1(2)                                                      <---                         <---------GLK1(1)                                                       ----                      <---------LBD16                                                      <---------ARR14(2)                     <---------ANAC46                                                      --------->ARR14(2)                     <---------LBD16                                   <<<<<<<<<TBF1       <---------ARR11(3)                    <---------LBD16     --------->WOX13(1)        <----------DOF2          --------->ARR11(3)            <---------TOE2(3)----------->GT1                  ---------->ID1               <---------ARR11(1)        <----------DOF2  --------->GLK1(1)   ------>ZmHOX2a(1)<---------CCA1(2)           <---------CCA1(2)   ttgaagaagcctttgagattgtctcggggatctgaaaaatgtcaatccttcaagtctctacttcgtctctttcttcttctactcttctctccatatctcc  16920100                               <---------ARR14(2)                               --------->ARR14(2)                    --------->ANAC46                    --------->bZIP60(2)                   <---------ICU4             <---------At4g35610                         --------->ICU4    --------->RVE1(1)        --------->LBD16         <---------ZAT18   --------->ARR11(3)       <---------ANAC46      <---------ANAC46   --------->GLK1(2)--------->ANAC58          <-----------HVH21   <---------ARR11(3)<-----------HVH21       <---------ANAC58                          <---------YAB1 ------>LBD16--------->At4g35610 <---------HSFB2a(1) --------->ZAT18         <---------YAB1 ------HSFB2a(2)    --------->ANAC58         <---------ANAC46              --------->YAB1 ----->HSFB2a(2)-------->P <---------LBD16   <---------ANAC58      --------->ZAT6<-------TEIL   cagaaaatctctctcatctaccaagtcatgccggatagttcgatgttccgtcgagggtacttatttctaactctcaattttgattcattttgatgaagtt  16920200                          --------->DAG2                         ---------->DOF2                   --------->MYB52(2)                   ----------->GT1                   --------->MYB111(1)                  <--------P             <---------LBD16                            <---------DAG2                  <---------ANAC58           --------->ARR14(2)                           <----------DOF2                 <---------ANAC46           <---------ARR11(3)                         <---------------AGL15             <---------ANAC55(1)           --------->ARR11(3)                         --------------->AGL15      <---------ANAC46           <---------ARR14(2)               ---------->DOF2           <------ZmHOX2a(1) <---------ANAC58          --------->RVE1(1)   ----------->GT1        <-----------------AGL1      <---------ANAC58    ----------->GT1<---------MYB46(3) <-----------GT1<-----------------AG        <---------ANAC58   tttggtgagttaatatctgggtagttataaagttgtgaattttccacaaagtttctctctttttggcaaataggaaacgaattgggtgtttcgtgtagta  16920300                                                  ----------->GT1                                             <-------TEIL                                 <---------AHL20(2)                                     <---------ICU4              ----------->GT1   --------->AHL20(2)--------->YAB1                        --------->YAB1       <---------WOX13(1)  <---------TOE2(3)<<<<<<<<<<<<<<<<<LFY        <---------GLK1(2)          <-     --------->ATHB12   <---------MYB52(1)----------->GT1         <----------DOF2      <---------ATHB12   cttgaattgattgttttggttaatctgttatggatttaatagatgggtacaatggtaatatgaagaaactttcagtttctcttgtaccaataatctctct  16920400  Previous    Next  AGI:  At2g40480.1    Description:  similar to unknown protein [Arabidopsis thaliana] (TAIR:AT3G56270.1); similar to unknown [Populus trichocarpa] (GB:ABK92463.1); contains InterPro domain Protein of unknown function DUF827, plant (InterPro:IPR008545) Range:  from: 16917442    to: 16919670    Orientation: Forward Links:  TAIR  MIPS    AGI:  At2g40490.1    Description:  HEME2; uroporphyrinogen decarboxylase. Identical to Uroporphyrinogen decarboxylase, chloroplast precursor [Arabidopsis Thaliana] (GB:O22886); similar to HEME1, uroporphyrinogen decarboxylase [Arabidopsis thaliana] (TAIR:AT3G14930.2); similar to HEME1, uroporphyrinogen decarboxylase [Arabidopsis thaliana] (TAIR:AT3G14930.1); similar to Uroporphyrinogen decarboxylase, chloroplast precursor (URO-D) (UPD) (GB:Q42967); contains InterPro domain Uroporphyrinogen decarboxylase HemE; (InterPro:IPR006361); contains InterPro domain Uroporphyrinogen decarboxylase (URO-D); (InterPro:IPR000257) Range:  from: 16919923    to: 16922255    Orientation: Forward Links:  TAIR  MIPS      Please cite the corresponding publications when using AthaMap.
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