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Chromosome 1
Chromosome 2
Chromosome 3
Chromosome 4
Chromosome 5
Position
Exon region
Intron region
UTR region
AGI
% Restriction to highly conserved TF binding sites (0-100)
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1 10 20 30 40 50 60 70 80 90 100
<------
ZmHOX2a(1)
--------->
ANAC58
--------->
ANAC46
--------->
ANAC58
--------->
AtLEC2
----------->
HVH21
--------->
TGA2(2)
<-----------
HVH21
--------->
ANAC58
<---------
ANAC55(2)
--------->
ANAC46
--
--------->
ANAC58
--------->
ZAT14
<-------
TEIL
--------->
SPL7
<---------
ZAT14
---------->
DOF2
--------------->
AtSPL3
--------->
ANAC46
--
-------
PIF5
<---------------
AtSPL8
--------->
ANAC55(2)
--------->
ANAC46
--------->
At4g35610
------>
PIF5
<------
ZmHOX2a(1)
<---------------
AtSPL3
<-------
TEIL
<---------
ALFIN1
--
cacggggagagaaagaggaggtacatgaagagaaacagtacgtcacgcagaggagaaagtttgggttcatacacattacacttccactgcagaagcagag
16919500
<---------
TOE2(3)
<---------
YAB1
<---------------
AGL15
<-----------------
AGL3
----------------->
AGL3
<-----------------
AGL2
------>
MYB83
------>
ZmHOX2a(1)
------>
MYB46(1)
--------->
ICU4
------->
ANAC58
--------->
AtMYB61
<---------
YAB1
<<<<<<<<<
MYB2
------->
ANAC58
<---------
ALFIN1
--------------->
AGL15
<---------
WOX13(1)
<--
--------->
GT1
<----------
DOF2
--------->
DEAR3(1)
---------->
ID1
<---------
YAB1
<<<<<<<<<<
MYB80
caagaaaaaatccagcctttaa
aaacaaacacctcccactatttctatttttagtccttattaatgtgtttgtaattggttttcattttggtttgatatg
16919600
<---------
LBD16
<----------
DOF2
<---------
DAG2
<---------
ANAC58
--------->
YAB1
<---------
ANAC58
--------->
TOE2(3)
<---------
WOX13(1)
<<<<<<<<<
ARR1
<---------
ANAC58
<---------
MYB46(3)
<<<<<<<<<
ARR2
--------->
YAB1
<---------
ANAC58
<---------
YAB1
<-----------
GT1
--------->
AHL20(2)
<------
--------->
ATHB12
<----------
DOF2
<---------
AHL20(2)
--------->
AHL20(2)
-------
<---------
YAB1
<---------
MYB52(1)
--------->
AHL20(2)
<---------
AHL20(2)
------->
TEIL
-------
ANAC46
--------->
LBD16
--------->
AHL20(2)
<----------
DOF2
<----------
DOF2
gtgttgattgcttttccggtcttttatatttgttgattttccaaaaaataaatatacaatcttagtcttt
aaataaaacataatgctttgaatctaatga
16919700
<---------
YAB1
------
<---------
YAB1
------
<---------
ARR14(2)
------->
TEIL
<-------
----------->
GT1
--------->
ZAT14
<-----------
ARR10
------>
MYB83
<----------
ID1
--------->
ATHB12
<---------
ZAT14
<---------
ARR11(3)
------>
MYB46(1)
---
ATHB12
<---------
YAB1
--------->
At4g35610
<---------
CCA1(2)
<---------
MYB59
-->
ICU4
<---------
YAB1
--------->
YAB1
----------->
GT1
---------->
DOF2
<---------
ATHB12
gtaaacaacaaatttgatagtgattgtaaaacaacaatgaaaactgcagaaatgtgattactggataaaagctgtatcttagcaatgaaaccgaaccaaa
16919800
<------
ZmHOX2a(2)
<---------
GLK1(1)
--------->
GLK1(1)
<---------
ARR14(2)
<---------
ARR11(3)
--------->
ARR11(3)
<---------
AGP1
--------->
ARR14(2)
<---------
ARR14(3)
--------->
ALFIN1
<---------
ZAT2
<---------
ANAC58
<---------
At4g35610
<---------
ANAC46
--------->
At4g35610
<---------
O2
<-----------
RAV1(2)
--------->
ANAC55(2)
--------->
TGA2(2)
<---------
bZIP60(1)
<-----------
HVH21
<---------
bZIP60(2)
<-----------
TGA1
<---------
ANAC55(2)
--------->
ANAC58
<---------
ANAC58
=============================
--------->
bZIP60(1)
--------->
TGA1a
<---------
TGA1a
<---------
O2
--------->
O2
--------->
O2
--------->
TGA1a
--------->
ANAC58
----------->
STF1
--------->
bZIP60(2)
<-----------------------
TaNAC69(2)
--------->
ANAC46
----------->
TGA1
<<<<<<<<<
GATA-3
----------->
HVH21
----------->
HVH21
<<<<<<<<<
GATA-4
-------
<---------
ATHB12
--------->
ZAT2
<<<<<<<<<
GATA-2
<--------
--------->
ATHB12
------------>
CBF
--------->
At4g35610
<<<<<<<<<
GATA-1
------>
ZmHOX2a(2)
>
MYB46(1)
<-----------
GT1
----------->
HVH21
--------->
TOE2(3)
<---------
CCA1(2)
>
MYB83
<---------
YAB1
------>
MYB46(1)
<---------
At4g35610
--------->
ARR14(2)
--------->
YAB1
--
MYB59
--------->
ICU4
------>
MYB83
<------
NtERF2
--------->
ANAC46
<---------
TGA1a
<---------
YAB1
ttgaaccaagatgattagaataaaccaaacaatgacgtggcagagatagtagctgactaggcaacgttgaatccacgtcagcagatctcttatcatcaaa
16919900
<---------
CCA1(2)
---------->
DOF2
------>
ZmHOX2a(2)
<---------
WRKY18(1)
<-----------
GT1
<---------
ALFIN1
<------
ZmHOX2a(2)
----------->
HVH21
====
bZIP_DOF
------->
GAMYB
<---------
AGP1
<-----------
GT1
--->
DOF2
--------->
DOF5.7(2)
<---------
ARR11(3)
--------->
WRKY12
-
YAB1
*
TSS
<---------
DOF5.7(2)
--------->
ARR11(3)
<---------
ALFIN1
gttttttctatcttcttcgttc
gaagacgttaaccccatctcgttgaaagagagaagatgctaagatctcaaaacagagtataacaacaccttgacctcg
16920000
========================
HOX2a_HOX2a
------>
ZmHOX2a(2)
<---------
At4g35610
--------->
At4g35610
<------
ZmHOX2a(2)
=========================
HOX2a_HOX2a
--------->
ARR11(3)
<---------
ARR11(3)
<---------
ARR14(2)
<---------
AGP1
--------->
ARR14(2)
---
--------->
GLK1(2)
<---
<---------
GLK1(1)
----
<---------
LBD16
<---------
ARR14(2)
<---------
ANAC46
--------->
ARR14(2)
<---------
LBD16
<<<<<<<<<
TBF1
<---------
ARR11(3)
<---------
LBD16
--------->
WOX13(1)
<----------
DOF2
--------->
ARR11(3)
<---------
TOE2(3)
----------->
GT1
---------->
ID1
<---------
ARR11(1)
<----------
DOF2
--------->
GLK1(1)
------>
ZmHOX2a(1)
<---------
CCA1(2)
<---------
CCA1(2)
ttgaagaagcctttgagattgtctcggggatctgaaaa
atgtcaatccttcaagtctctacttcgtctctttcttcttctactcttctctccatatctcc
16920100
<---------
ARR14(2)
--------->
ARR14(2)
--------->
ANAC46
--------->
bZIP60(2)
<---------
ICU4
<---------
At4g35610
--------->
ICU4
--------->
RVE1(1)
--------->
LBD16
<---------
ZAT18
--------->
ARR11(3)
<---------
ANAC46
<---------
ANAC46
--------->
GLK1(2)
--------->
ANAC58
<-----------
HVH21
<---------
ARR11(3)
<-----------
HVH21
<---------
ANAC58
<---------
YAB1
------>
LBD16
--------->
At4g35610
<---------
HSFB2a(1)
--------->
ZAT18
<---------
YAB1
------
HSFB2a(2)
--------->
ANAC58
<---------
ANAC46
--------->
YAB1
----->
HSFB2a(2)
-------->
P
<---------
LBD16
<---------
ANAC58
--------->
ZAT6
<-------
TEIL
cagaaaatctctctcatctaccaagtcatgccggatagttcgatgttccgtcgagg
gtacttatttctaactctcaattttgattcattttgatgaagtt
16920200
--------->
DAG2
---------->
DOF2
--------->
MYB52(2)
----------->
GT1
--------->
MYB111(1)
<--------
P
<---------
LBD16
<---------
DAG2
<---------
ANAC58
--------->
ARR14(2)
<----------
DOF2
<---------
ANAC46
<---------
ARR11(3)
<---------------
AGL15
<---------
ANAC55(1)
--------->
ARR11(3)
--------------->
AGL15
<---------
ANAC46
<---------
ARR14(2)
---------->
DOF2
<------
ZmHOX2a(1)
<---------
ANAC58
--------->
RVE1(1)
----------->
GT1
<-----------------
AGL1
<---------
ANAC58
----------->
GT1
<---------
MYB46(3)
<-----------
GT1
<-----------------
AG
<---------
ANAC58
tttggtgagttaatatctgggtagttataaagttgtgaattttccacaaagtttctctctttttggcaaataggaaacgaattgggtgtttcgtgtagta
16920300
----------->
GT1
<-------
TEIL
<---------
AHL20(2)
<---------
ICU4
----------->
GT1
--------->
AHL20(2)
--------->
YAB1
--------->
YAB1
<---------
WOX13(1)
<---------
TOE2(3)
<<<<<<<<<<<<<<<<<
LFY
<---------
GLK1(2)
<-
--------->
ATHB12
<---------
MYB52(1)
----------->
GT1
<----------
DOF2
<---------
ATHB12
cttgaattgattgttttggttaatctgttatggatttaatagatgggtacaatggtaatatgaagaaactttcagtttctcttgtaccaataatctctct
16920400
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AGI:
At2g40480.1
Description:
similar to unknown protein [Arabidopsis thaliana] (TAIR:AT3G56270.1); similar to unknown [Populus trichocarpa] (GB:ABK92463.1); contains InterPro domain Protein of unknown function DUF827, plant (InterPro:IPR008545)
Range:
from: 16917442
to: 16919670
Orientation: Forward
Links:
TAIR
MIPS
AGI:
At2g40490.1
Description:
HEME2; uroporphyrinogen decarboxylase. Identical to Uroporphyrinogen decarboxylase, chloroplast precursor [Arabidopsis Thaliana] (GB:O22886); similar to HEME1, uroporphyrinogen decarboxylase [Arabidopsis thaliana] (TAIR:AT3G14930.2); similar to HEME1, uroporphyrinogen decarboxylase [Arabidopsis thaliana] (TAIR:AT3G14930.1); similar to Uroporphyrinogen decarboxylase, chloroplast precursor (URO-D) (UPD) (GB:Q42967); contains InterPro domain Uroporphyrinogen decarboxylase HemE; (InterPro:IPR006361); contains InterPro domain Uroporphyrinogen decarboxylase (URO-D); (InterPro:IPR000257)
Range:
from: 16919923
to: 16922255
Orientation: Forward
Links:
TAIR
MIPS
Please cite the corresponding
publications
when using AthaMap.