Home Tools   - Search   - Colocalization   - Gene Analysis   - Gene Identification   - Small RNA Targets   - MicroRNA Targets Description Documentation Citations Downloads Publications History Contact Links Disclaimer	Search   Chromosome 1 Chromosome 2 Chromosome 3 Chromosome 4 Chromosome 5    Position Exon region Intron region UTR region AGI % Restriction to highly conserved TF binding sites (0-100)   Go to graphical and table display  1        10        20        30        40        50        60        70        80        90        100                     <---------DAG2                   <----------DOF2     --------->ANAC58                        <----------DOF2               <---------ZAT18         --------->ANAC58              ---------->DOF2               --------->ZAT18         --------->ANAC46            ------>ZmHOX2a(1)           --------->DAG2     <-----------GT1              --------->TOE2(3)<-----------GT1   -------          ---------->DOF2<---------AHL20(2)     --------->YAB1    --------->TOE2(3)   --------->MYB46(3)   acaaaaaaaaaaaaaagtcccctttatattatttgcctcacaagtcacaatcgaaactctagcttaatcctaaaagtttgacttttcatccaccattaaa  15760600                                                                    --------->HSFB2a(2)                                                              --------------->AGL15                                                              <---------------AGL15                                                           --------->GLK1(2)                      <---------AHL20(2)                  <---------GLK1(2)                      ----               --------------------->WRI1  <---------AHL20(2) <----------DOF2                   -----              --------->ATHB12            <---------AHL20(2) <-----------------AGL2             -----     <---------At4g35610                  --------->AHL20(2) <-----------------AGL3  --------->ANAC46 -->AHL20(2) <---------ATHB12<---------ZAT18     <---------ZAT6     <---------HSFB2a(2)       <------   acatttcatcttccattcattgaatttatagtagacttgactaattttatagtgttttccgattctttttttggaagaaagtcttacacgacgagtaaac  15760700                                                                                    <---------ICU4     <---------AHL20(2)                                                            <---------YAB1    <---------AHL20(1)                                                             --------->ICU4    --------->AHL20(2)                     --------->AHL20(2)                    --------->YAB1    <---------AHL20(2)                   --------->ANAC58    <----------ID1  --------->TOE1(2)    --------->AHL20(1)                   --------->ANAC58    ----------->GT1 --------->TOE2(2) ----->TOE2(3)                   <---------ANAC58           ----------->GT1--------->GLK1(2) ------>GT1                      <---------ANAC58          --------->DAG2  ------->TEIL          ---- ---->ANAC46                --------->ATHB12   --------->RVE1(1)      ---------->DOF2          ------ ---DOF5.7(2)        --------->YAB1    <---------AtLEC2   ---------->DOF2 --------->ARR11(3)   <-----   gtaaaataaaatttgtttggcaatagtaatagattgggtttgcaagaaaatatcagaaggaaaaggaaaaatgaaagaacctgtgatgatggcagtgaga  15760800                                                       <---------DAG2                --------->ARR14(2)                                                     ------>MYB46(1)                 <---------ARR14(2)                                            <------ZmHOX2a(2)                  --------->ANAC58                                           --------->ARR14(2)                  --------->ANAC46                                           <---------ARR14(2)             --------->YAB1          ---             <---------ANAC46              <---------ARR11(3)             --------->bZIP60(1)     ===             <---------ANAC58              --------->AGP1<----------DOF2  <---------bZIP60(1)   -----             <---------ANAC58 <---------At4g35610    ------>MYB83  <-----------GT1   <---------ARR11(3) ------->HVH21                --------->At4g35610   <---------ALFIN1    <-----------HVH21    <------- --->At4g35610         <---------ARR11(3) --------->At4g35610     <-----------GT1   <---------CCA1(2) ----At4g35610         --------->ARR11(3) --------->GLK1(1)   <----------DOF2  --------->ANAC58 <----   tgactggcatcaatggcttgagtaacatcttcagcagtagaagcagatccaaacccactctttccttttttccctgtcatcactccatatattcccatga  15760900                                                                      --------->TOE1(3)                                                               --------->YAB1                              <---------AHL20(1)              <---------ATHB51 <---------REM1(1) --->ZmHOX2a(2)               --------->AHL20(1)            --------->YAB1     <-----------RAV1(1) ===========================HOX2a_HOX2a                   ------>MYB46(1)     --------->ARR11(3) ---->ARR11(3)                --------->AHL20(2)          ------>MYB83--------->TOE2(3)      -------- --TOE1(2)           ------>ZmHOX2a(1) ---------->DOF2   ----------->RAV1(1)  <---------ARR11(3) -----ARR11(3)      XXXXXXXXXXXXXXXXXXXXX>MIR830*      --------->MYB46(3) ---------->DOF2  --------->MYB52(1)   tctctctctctctctctctcttcctctgcaaatattttagagaaagaaaatgaagaaaccaacaataataaaccctaaaagatgttgcagagcaaacaga  15761000                                                                                     <---------ANAC58                                                                                     --------->TGA1a                                                                                     ================                                                                                     <---------TGA1a                                                                                   ==================                                                                                   <---------TGA1a                                                                                   --------->ANAC58                                                                                   --------->TGA1a                                                                                   --------->ANAC58                                                                                   <---------O2                                             *TSS                      --------->AHL20(2)                                             <------ZmHOX2a(1)         ----------->TBP                                            <---------MYB52(2)       ========================bZIP_DOF                                           --------->ANAC58          <----------DOF2 --------->O2                                           --------->ANAC58          ========================bZIP_DOF                                       <------MYB46(1)              <---------ANAC58 <---------O2                                <---------AtLEC2                    <---------ANAC46 ================                       <-----------GT1 <------MYB83            --------->ALFIN1    ==================                    ----------->GT1<---------MYB46(3)          <-----------RAV1(1) --------->O2 ----- ->YAB1       ---------->DOF2  <---------MYB46(3)    >>>>>>>>>TBF1  <---------ANAC58 <---------ANAC58   atggagaagaaatagagaaagagagttacaagttggatggatggtaaggaacgaagaagaaaactgtgtggctttaaataggctcacgcgtgagtagaga  15761100        <---------ETT(2)                              <---------YAB1        --------->ETT(2)                            --------->YAB1        ----------->HVH21                          <---------YAB1      <-------GAMYB         <---------TOE2(3)     --------->AHL20(2)      <---------At4g35610 <---------AHL20(2)     --------->YAB1   <---------At4g35610<---------AHL20(1)         <---------ICU4             <---------WOX13(1) ======bZIP_DOF       <---------AHL20(2)        --------->ICU4         <-------GAMYB ======bZIP_DOF   --------->ICU4      ----------->HVH21          <---------ARR11(3)           <------ =============MYC_MYB --------->AHL20(1)   --------->At4g35610   --------->ARR11(3)        ---------- =============MYC_MYB --------->AHL20(2)   <---------At4g35610   <---------GLK1(2)       ---------->DOF2 ----->DOF2     ----------->GT1 <-----------TBP <---------YAB1 ----------->ARR10     ---------->DOF2   aagtttgctgttgacaggtagtaattaattaagtttttatatgacagctaattataatcaatgtttagattttcgttgaatgactagaaaagaaagttac  15761200                             --------->TOE1(3)                             --------->TOE2(3)                           --------->ARR11(3)                           <---------ARR11(3)                          <---------GLK1(1)                          --------->GLK1(1)                               <---------GLK1(1)                  <<<<<<<<<GATA-3                                       --------->ATHB12                  <<<<<<<<<GATA-4                       ----------->GT1 --------->YAB1                  <<<<<<<<<GATA-1                  ---------->DOF2      <--------ATHB1                  <<<<<<<<<GATA-2               --------------->AGL15   <---------ICU4                --------->WOX13(1)              <---------ZAT6         <---------YAB1          <----- -----GT1    --------->TOE2(3)                <---------At5g28300      --------->ICU4          <----- ->GT1----------->GT1 --------->ANAC46       <-----------GT1           <---------ATHB12        >>>>>>   tactgatatagtaaacatcaatccacagaaatcttaaaatttggattttactgtaaaggggtttatttggacaatgatttctcaaatattcaaattgact  15761300     <---------AHL20(2)    <---------ARR11(3)        --------->YAB1    --------->AHL20(1)       <---------YAB1                                       <---------AHL20(2)    <---------AHL20(1)     <----------DOF2                                        --------->AHL20(1) ----ANAC58         <---------HSFB2a(2)            <-------TEIL  --------->AHL20(2) ----ANAC58         --------->HSFC1(1)         --------->DAG2    <---------AHL20(2)        ---------- >>>>WRKY18         --------->HSFB2a(2)       ---------->DOF2   --------->AHL20(2)<---------AHL20(1)   tgactatatatttgttaaacttctagagacttttatagtttatattcgtaaagtgcatactaaaaattaaaatgtacaagggattatattttgtaaagtt  15761400                                                                     --------->TOE2(3)                                                              <---------ANAC55(2)                                                              --------->ANAC55(2)                                                             <-------TEIL                                                          <------MYB46(1)                  <---------YAB1                                    <----------ID1        <------MYB83                     <---------AHL20(2)                                  ---------->DOF2        --------->MYB111(1)             --------->YAB1                           --------->YAB1   --------->AHL20(2)<---------ANAC46<---------YAB1--------- --------->ICU4            --------->AHL20(2)            <---------------AtSPL3         <---------YAB1 >DOF2        <----------DOF2 ---------->DOF2            <---------------AtSPL8        --------->AHL20(2)   gtaatcttgaaatagacttttacaactaataaaaaagaaagacaaataaaacatttgagttggtacgtatacattagatgattcttgatttttataatta  15761500  Previous    Next  AGI:  At2g37540.1    Description:  short-chain dehydrogenase/reductase (SDR) family protein. similar to short-chain dehydrogenase/reductase (SDR) family protein [Arabidopsis thaliana] (TAIR:AT5G02540.1); similar to putative pod-specific dehydrogenase SAC25 [Brassica napus] (GB:CAB58175.1); contains InterPro domain Glucose/ribitol dehydrogenase; (InterPro:IPR002347); contains InterPro domain Short-chain dehydrogenase/reductase SDR; (InterPro:IPR002198); contains InterPro domain NAD(P)-binding; (InterPro:IPR016040) Range:  from: 15758646    to: 15761045    Orientation: Reverse Links:  TAIR  MIPS      Please cite the corresponding publications when using AthaMap.
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