Home Tools   - Search   - Colocalization   - Gene Analysis   - Gene Identification   - Small RNA Targets   - MicroRNA Targets Description Documentation Citations Downloads Publications History Contact Links Disclaimer	Search   Chromosome 1 Chromosome 2 Chromosome 3 Chromosome 4 Chromosome 5    Position Exon region Intron region UTR region AGI % Restriction to highly conserved TF binding sites (0-100)   Go to graphical and table display  1        10        20        30        40        50        60        70        80        90        100                                  <---------------AGL15                                <---------RVE1(1)                                <---------CCA1(1)                               --------->ARR11(3)                               <---------ARR11(3)                               <-----------------AG                               <-----------------AGL3                            ----------->HVH21                              --------->YAB1                              <---------ICU4                           --------->YAB1         <---------YAB1          --------->YAB1    ---------->ID1         <---------ICU4     ----------->GT1             ---------->DOF2 -------AHL20(2)    ----------->GT1      ---------->DOF2                 <---------ATHB12   atatttgtggtatttttgaaaatggataaaaatgatatttttggaaagtagtataattttaaaaaacttctcccaataaagacatgaccaaaaatgtgtg  12011400                                                                            --------->AHL20(2)              <---------AHL20(2)                                    ----------->RAV1(1)            <---------AHL20(2)                                      --------->AtMYB61          <---------AHL20(2)                                       --------->ANAC46              ----         --------->AHL20(1)                                       ----------->RAV1(1)     --------->AHL20(2)         <---------AHL20(1)                                      <---------ALFIN1      ----------->GT1        <---------AHL20(2)          <---------ARR14(2)           --------->ANAC46      --------->YAB1 <-----------GT1                    --------->ARR14(2)        --------->ANAC46        <---------ATHB12   ttatttctatatatatttttttttttttttgatcaacatatactcttgtttctaatctgcattccctccaccacaaaaaaaaattcaaatgataaaatat  12011500                                               --------->ATHB12                                   --------->ANAC58                                   --------->ANAC46                                   --------->ANAC58                                   <----------ID1                            --------->AtLEC2   <---------ICU4                            --------->ANAC58  <---------YAB1                        <-----------HVH21     <---------ATHB12                           <---------AtLEC2                   <---------YAB1<---------ALFIN1         --------->YAB1               --------->AtLEC2                   <---------AHL20(2)       <-----------GT1                         --------->WRKY18(1)                  --------->AHL20(2)       --------->AHL20(2)                      <-----------HVH21                  --------->AHL20(1)       <---------AHL20(2)                 --------->CCA1(2)                  <---------AHL20(1)      --------->AHL20(2)                  <-----------GT1                 --------->YAB1----------->RAV1(1)       >>>>>>>>>MYB98 --------->AHL20(2) ---------- ------>DOF2----------->GT1 --------->ANAC58--------->WOX13(1)  <---------AHL20(2)--------->ANAC46   aaagaagaacaatgtggaaatataattgtcatgcaacacgacaaattaatcattcgagtaacataatttatacatataatatacaggtcatgcatgacat  12011600                                    --------->YAB1                                --------->MYB46(3)                               ------>MYB83       --------->MYB52(1)      ------>MYB46(1)                                                    ---    --------->ANAC55(2)      ------->GAMYB                                                  <--------    --------->ANAC55(1)     --------->MYB46(3)                                              <--------    <---------ANAC55(2)     <---------MYB55(2)                      --------->ATHB12  --------->YAB1    --------->ANAC58       --------->ANAC58                    <---------AHL20(2)     --------->TOE2(3)    --------->ANAC58       --------->ANAC58         <---------AHL20(2)               ----------->GT1    --------->ANAC46       -------->P               --------->AHL20(2)   --------->TOE2(3)  --------- --------->ANAC46         --------->WOX13(1)      <----------DOF2 <---------WOX13(1) <---------YAB1 ->HVH21        XXXXXXXXXXXXXXXXXXXX>MIR401<-------TEIL        <---------YAB1  --------------->AGL15   tacaagacgtaactgaataaactaatatcaaccaactatcaagagtacatttctttaaatttgttttaattgatttcttaacttattatgttaattaata  12011700                                                                     <---------WOX13(1)                         <---------AHL20(2)                         <------------CBF -------->GT1          ----------->TBP                      <----------DOF2      --------->ANAC58 -ICU4                <---------AHL20(2)        <-------GAMYB      --------->ATHB12  *TSS           < -AHL20(2)           --------->AHL20(2)     <----------DOF2 <---------DAG2       --------->ANAC46   < >AHL20(2)           --------->YAB1   ---------->ID1    --------->MYB46(3)       --------->ANAC58   <   cagtttatttcatactcactctattatataaactcattttgtctctctttcgttgtcaacaacttttcttcattgacaaaaacacacaaatggaaggaag  12011800                                                                                          <------ZmHOX2a(2)                                                                                         <---------ARR11(3)               --------->YAB1                                                            --------->ARR11(3)         <-----------HVH21<---------HSFB2a(2)                                           --------->GLK1(1)    ------->GAMYB         --------->HSFB2a(2)                                           <---------GLK1(1) <---------DOF5.7(2)     ------>ZmHOX2a(2)         <------ZmHOX2a(2)                   ----------->ARR10 ---------WRKY38(1)     <------ZmHOX2a(2)         <---------ARR14(2)        --------->TOE2(3) ---------WRKY45       --------->ARR11(3) <---------ANAC58     <------ZmHOX2a(2)      <------ZmHOX2a(1) ---------WRKY12       <---------ARR11(3) <---------ANAC58     ==============================HOX2a_HOX2a   agtcaacgctctgtcaaacataaacgatctcgaacttcacaatttcttggtcgatccaaacttcgatcagttcataaacctcataagaggagatcatcaa  12011900                                                                                               ------                --------->ARR14(2)                                                             ------                <---------ARR14(2)                                                          <--------    <---------TOE2(3)         ------>ZmHOX2a(2)     ----------->RAV1(2)                   <----------   >>>>>>>>>WRKY18          --------->ARR11(3)---------->DOF2                          ----------->RAV1(2)  --------->WRKY12   --------->ATHB12        --------->MYB52(1)                      <---------ALFIN1   accattgacgaaaacccagttcttgatttcgatcttggtccattacaaaacagcccctgtttcatagacgagaaccagttcatcccaacacctgtcgatg  12012000                                                   <---------ZAT2                                                   --------->ZAT2                                                   --------->HSFC1(2)                                                   <---------HSFC1(2)                                                --------->LBD16                                               --------->ANAC55(2)                                               <---------ANAC55(2)                           <-------                                               <---------ANAC46                 <---------MYB46(3)                                               <---------ANAC58                <---------AtMYB61                                               <---------ANAC58                <---------DEAR3(1) --->WRKY12     ----------->HVH21         <---------ICU4           <---------ZAT6  <xxxxxxxxxxxxxxxxsmallRNA(s) ----->HVH21  <---------ANAC58           <---------ATHB12   --------->At5g28300--------->ALFIN1 -ETT(2)      <---------ANAC58     --------->At4g35610    <---------DEAR3(1)  <---------MYB52(1) -HVH21       ----------->RAV1(2)  <---------At4g35610 ----------->HVH21    <---------DEAR3(1)   acctcttcgacgaattgcctgacttagactccaacgttgctgaatcattccgtagcttcgacggtgatagtgttagagccggtggtgaagaagatgaaga  12012100                                                     --------->LBD16                                                    --------->ANAC58                                                    <---------ANAC55(2)                                                    --------->ANAC55(1)                                                    --------->ANAC46                                                    --------->ANAC58                                                    --------->ANAC55(2)                                                 --------->PCF2                                                --------->TCP15(1)                                                <---------PCF2                                           -------->HAHB4                              ------>ZmHOX2a(2)                                           --------->ATHB12                           <---------GLK1(1)                                           --------->YAB1                            --------->ARR11(3)                                           <---------ICU4                        <----------DOF2                                          --------->ICU4                      <------ZmHOX2a(1)               --------->ICU4             <---------YAB1                      ================HOX2a_HOX2a               <---------YAB1           <---------ICU4                     --------->HSFB2a(2)         <---------DEAR3(1)             --------->YAB1 --------->SPL7      <---------HSFB2a(2)       ------->GAMYB                   --------->ICU4<-----------HVH21   --------->WRKY18(1)      --------->MYB46(3)  --------->MYB46(3)    --------->TCP20       ===============HOX2a_HOX2a --------------WRI1      <---------At4g35610   ----------->HVH21      ------>ZmHOX2a(2)==============   agattacaacgacggtgatgattcttcagccactactacgaataatgatgggacccgtaagacgaagactgatcggtctaggactttgatctctgagaga  12012200                                                                                                   <-                                                                                             --------                                                                                        <------MYB83                                                                                        <------MYB46(1)                                                                                       --------->MYB59                                                                                     --------->ARR14(1)                                                                                     --------->CCA1(2)                  =============================HOX2a_HOX2a                          --------->ARR11(3)                  ============================HOX2a_HOX2a                           <---------ARR11(3)                  <------ZmHOX2a(1)                   --------->YAB1                <---------ARR14(2)                <---------TOE2(3)                    <---------ICU4              --------------->AGL15          <---------SPL7               <---------GLK1(1)                         <---------------AGL15         <---------ANAC58              <------ZmHOX2a(2)          --------->ANAC58  --------->ARR14(2)         <---------ANAC58             --------->ARR11(3)          --------->ANAC58  --------->ARR11(1)         <---------ANAC46             <---------ARR11(3)        <--------P      <-----------------AG  <------ZmHOX2a(1)      <----------DOF2------>ZmHOX2a(2)    <---------TOE1(3)  ----------------->AGL1 ========HOX2a_HOX2a     <---------DAG2--------->GLK1(1)     <---------TOE2(3)  <-----------------AGL1   agaaggagagggcgtatgaaggataagctttatgcattgagatctcttgttcccaatattactaaggtaagtcacaacattttcaagatttggtaatgac  12012300  Previous    Next  AGI:  At2g28160.1    Description:  ATBHLH029/BHLH029/FIT1/FRU (FE-DEFICIENCY INDUCED TRANSCRIPTION FACTOR 1); DNA binding / transcription factor. similar to AMS (ABORTED MICROSPORES), DNA binding / transcription factor [Arabidopsis thaliana] (TAIR:AT2G16910.1); similar to unnamed protein product [Vitis vinifera] (GB:CAO16746.1); contains InterPro domain Basic helix-loop-helix dimerisation region bHLH; (InterPro:IPR001092); contains InterPro domain Helix-loop-helix DNA-binding; (InterPro:IPR011598) Range:  from: 12011785    to: 12013199    Orientation: Forward Links:  TAIR  MIPS      Please cite the corresponding publications when using AthaMap.
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