Home Tools   - Search   - Colocalization   - Gene Analysis   - Gene Identification   - Small RNA Targets   - MicroRNA Targets Description Documentation Citations Downloads Publications History Contact Links Disclaimer	Search   Chromosome 1 Chromosome 2 Chromosome 3 Chromosome 4 Chromosome 5    Position Exon region Intron region UTR region AGI % Restriction to highly conserved TF binding sites (0-100)   Go to graphical and table display  1        10        20        30        40        50        60        70        80        90        100                                                                        --------->ANAC55(2)                                                                      <---------ANAC55(2)                                                                      ----------->GT1                                                                      --------->ANAC58 ----------HVH21                                       <---------GLK1(1) ------->At5g28300                                     --------->GLK1(1) ---->GAMYB                                           <---------ARR11(3) --->MYB52(1)                                         --------->ARR11(3) -->MYB46(3)         ----------->GT1        <----------DOF2           --------->ANAC58          -----   cggtcactgtttaaaatcaagagaagaaaaacttagattacaacagctttacttcagatatcacagccaagaacgtaatatcgcatacgagaacaaaatc  11252700                                                      --------->ARR11(3)                                                 --------->AHL20(2)       ------->TEIL                              <---------AHL20(2)  --------->YAB1                            --------->AHL20(2)  <---------ICU4                          ----------->GT1 --------->ICU4                      --------->MYB52(1) <---------ATHB51                  <---------MYB52(2) <---------ARR11(3) ------>GT1             <---------ATHB12---------->DOF2     <---------YAB1         <---------GLK1(2)   gaaataatgaacattatacacatgaaatcaatttgtgactaacaaagttaataaaacatctcataaatgaaaaaacacaattacaggttctatattagcc  11252800                                                                                        --------->REM1(1)              --------->GLK1(2)              <---------WOX13(1)                       ---------------             <---------GLK1(2)              <---------ANAC58                          <--------------             --------->ARR14(2)             <---------ANAC58                         <---------------             <---------ARR14(2)            --------->ATHB12   <---------O2           <---------------            <------ZmHOX2a(1)  --------->GLK1(2)              --------->O2           ----------------           <---------YAB1     <---------GLK1(2)             --------->CCA1(2)      <-----------GT1   aaacttcagaattaggattctgccaaaattcagaatctcacaaattgattgctataacagagagacgagactatattgtcgatttttgctacatttagta  11252900                                          ------>MYB46(1)                                          --------->MYB52(1)                                     <-----------GT1                                   --------->AHL20(2)      --------->ANAC58          --------->WOX13(1)      --------->ANAC58       --------->ANAC58   --------->ARR14(2)        --------->ANAC46   <---------ARR14(2)        --------->ANAC58 >AGL15                     --------->WOX13(1) <---------TOE2(3)                     ---------->DOF2 -AGL15                   <------ZmHOX2a(2)>>>>>>>>>MYB1                       <------MYB83 --AGL2                  --------->ARR11(3)>>>>>>>>>MYB2                       <------MYB46(1) --AGL3            --------->At4g35610    ------>MYB83                       <--------P--------->DAG2 ->AGL2            <---------At4g35610  <---------MYB59                   <---------TOE2(2) <--------   atgagattacgccctaatttcaactgagatcaagcaattaaacctaactgagattaatcgcgattagaaatcaacacaggttggattaaaaggggaaatg  11253000                                <------NtERF2                                --------->RAP2.3(1)                               <---------RAP2.3(1)                              <---------DEAR3(1)                              <---------RAP2.3(2)                              <---------ANAC46                              <---------RRTF1(3)                              --------->DEAR3(1)                              <---------RAP2.3(3)                             --------->ATERF1(1)                             <---------ABI4(1)             --------->ARR14(2)<---------ORA47(2)             <---------ARR14(2)<---------ERF1           --------->LBD16  <---------DEAR4(2)         <-----------------AGL1------>NtERF2         <-----------------AG<------NtERF2                                             --------->LBD16         ----------------->AGL1<---------ATERF1(1)       --------->At4g35610   --------->ANAC58         <---------LBD16    <---------RAP2.3(1)          <---------At4g35610   ----------------->AGL1        ------->TEIL        <---------ORA47(2)       <------ZmHOX2a(1)         --------->ANAC58    --        --------->MYB52(1)  <---------ATERF1(1)  <---------ANAC46             <------NtERF2        <-      <---------SPL7       <---------RAP2.3(3)  <------NtERF2                ------>NtERF2         --    <---------------AtSPL8 --------->ANAC46     ------>NtERF2               --------->DEAR3(1)     <-    <---------------AtSPL3 <---------DEAR3(1)<---------LBD16                <---------DEAR3(1)     --   <------ZmHOX2a(1)       <---------RAP2.3(2)<---------DEAR3(1)            ----------->HVH21   ----- <---------TOE2(3)     --------->CCA1(2) <---------GLK1(2)      --------->CCA1(2)    <---------LBD16< -ARR14(2)--------------->AGL15<---------DEAR4(2)--------->DEAR3(1)         <----------ID1--------->GLK1(1)   gtttaggatgtaccggaattgggagatagacggcggcgaaacagactcgcggcgaggagagcggagagacgagaagaggcgacgaaatcgggaaatcgag  11253100                                                           <------------CBF                                                          <------------ATHB5                                                          <--------ATHB1                                                          --------->ATHB12                                                          --------->ATHB51                                                          <---------ICU4              ----------->GT1                             -------->HAHB4             *TSS                                        --------->AHL20(2)          --------->ALFIN1                               <---------YAB1    <---------HSFB2a(2)                                  <---------AHL20(2) ------->MYB52(2)                                        --------->ICU4 --------MYB46(3)                                    --------->AHL20(1) ------->MYB55(2)                                    <---------AHL20(2) ----------RAV1(1)                                   --------->AHL20(2)                         <---- ------->MYB111(2)                       --------->DAG2  <---------ATHB51            <------------CBF ------->MYB.PH3(2)  ---------->DOF2    ---------->DOF2 <---------AHL20(1)          --------->ATHB12 -------GAMYB----------->GT1----------->GT1   ----------->GT1                      --------->ICU4   tttgttggagaagtgagggaaaaaaaagaagagaaattagcaaaaaggaagaaaataaaataattgggcctactctaactaggcccttattgggcttagg  11253200                             <-------TEIL                   --------->ARR14(2)                                             <---------At4g35610                   <---------ARR14(2)  <-----------GT1                            --------->At4g35610                <---------TOE2(3)     <---------AHL20(2)                   --------->bZIP60(1)   ----  ----------->GT1 <------ZmHOX2a(1)   --------->AHL20(2)             --------->ALFIN1  ------>ZmHOX2a(1) --ZmHOX2a(1)  <-----------GT1    --------->AHL20(2) <------ZmHOX2a(2)     <---------bZIP60(1)  -----   aaggaagaaaaatgtttttaggattcgatgatacatgtaattaactaattaagagatcgattgtttgaactgtggtgatgtctctgctccttccatagat  11253300                                                                                                    <                  <---------ICU4           <------ZmHOX2a(2)                                        -       --------->TOE2(3)                  --------->ARR11(3)                                ---------     --------->GLK1(2)        --------->DAG2     ------->TEIL            ----------->RAV1(1)---------   <---------AHL20(2)        ---------->DOF2  --------->AtLEC2    <-----------RAV1(1)       --------- ------->GT1  <---------AHL20(2)       <---------WOX13(1)         --------->ALFIN1          <-------- ------>GT1   --------->AHL20(2)    <---------YAB1          <---------AHL20(2)  <---------LBD16    --   gttaaataatctaaaattaaaaatttcgataaaaagttctgatggatcatgcatctaaattttaaaatgtgttgccaacattcagggagacaacacgaca  11253400                                                    --------->AHL20(2)                                                    <---------ARR11(3)                                                    --------->AHL20(1)                                             --------->LBD16                                     <---------ANAC58                                     <---------ANAC58   <---------AHL20(2)             <---------WOX13(1)<---------AHL20(1)   <---------YAB1               --------->ATHB12    <---------AHL20(2) --------->YAB1           <---------AHL20(1)--------->ANAC58 ---------AHL20(2)        --------->AHL20(1)--------->ANAC58 -------->AHL20(2)        <---------AHL20(2)--------->ANAC46      ----------->GT1 >ANAC58               <---------AHL20(2)  <---------LBD16      ---------->DOF2        <---------YAB1 >ANAC58               --------->AHL20(2)<---------ARR14(2)   --------->YAB1         --------->ATHB51 >ANAC46        ----------->GT1<---------AHL20(2)   --------->ARR11(3)               <---------ICU4 --ID1  <-----------GT1--------->AHL20(1)--------->ARR14(2)  <---------ATHB12  <---------At4g35610 ------->AHL20(2)   XXXXXXXXXXXXXXXXXXXX>MIR1886.2 --------->AHL20(2)          ------>NtERF2   aatttataattttcaatttggaaaataaaatatttgattgctagacccgcaaaatatattcaaatcaaaagttacaaatgcagcccataatttttgtatg  11253500                     <---------HSFB2a(2)                  <---------ARR14(2)                 ------>MYB46(1)                 ------>MYB83               --------------->AGL15               <---------------AGL15               <---------MYB59               <---------MYB111(1)              ----------------->AGL1              ----------------->AGL2              ----------------->AG                   --------->ANAC58             -------->P                              --------->ANAC58           --------->MYB46(3)                   <---------------AtSPL8          <-------TEIL --------      <-------TEIL--------->ARR14(2)            --------------->AtSPL8        --------->ARR14(2)     --------->ARR14(1)     --------->AHL20(2)  <---------TOE2(3)             <---------ARR14(2)    <---------GLK1(2)--------->HSFB2a(2)      ---------->DOF2                 <---------GLK1(2)    --------->ARR11(1)--------->LBD16    <---------At5g28300 <-------TEIL  --------->HSFB2a(2)   ctcttagattcgaactaccaaatccagaaataaaacacaaaattacagtaaaggtactcaaaattcatatcaaatttcgagattcgtcgaagttcgaaag  11253600  Previous    Next  AGI:  At2g26430.1    Description:  RCY1 (ARGININE-RICH CYCLIN 1); cyclin-dependent protein kinase regulator. Identical to Cyclin-L1-1 (CYCL1-1) [Arabidopsis Thaliana] (GB:Q8RWV3;GB:O48710;GB:Q94L33); similar to cyclin family protein [Arabidopsis thaliana] (TAIR:AT5G45190.1); similar to unnamed protein product [Vitis vinifera] (GB:CAO15428.1); contains InterPro domain Cyclin L (InterPro:IPR017060); contains InterPro domain Cyclin (InterPro:IPR006670); contains InterPro domain Transcription regulator cyclin (InterPro:IPR015429); contains InterPro domain Cyclin, N-terminal (InterPro:IPR006671); contains InterPro domain Cyclin-like (InterPro:IPR011028) Range:  from: 11250297    to: 11253113    Orientation: Reverse Links:  TAIR  MIPS      Please cite the corresponding publications when using AthaMap.
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