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Chromosome 1
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Chromosome 3
Chromosome 4
Chromosome 5
Position
Exon region
Intron region
UTR region
AGI
% Restriction to highly conserved TF binding sites (0-100)
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1 10 20 30 40 50 60 70 80 90 100
--------->
ANAC55(2)
<---------
ANAC55(2)
----------->
GT1
--------->
ANAC58
----------
HVH21
<---------
GLK1(1)
------->
At5g28300
--------->
GLK1(1)
---->
GAMYB
<---------
ARR11(3)
--->
MYB52(1)
--------->
ARR11(3)
-->
MYB46(3)
----------->
GT1
<----------
DOF2
--------->
ANAC58
-----
cggtca
ctgtttaaaatcaagagaagaaaaacttagattacaacagctttacttcagatatcacagccaagaacgtaatatcgcatacgagaacaaaatc
11252700
--------->
ARR11(3)
--------->
AHL20(2)
------->
TEIL
<---------
AHL20(2)
--------->
YAB1
--------->
AHL20(2)
<---------
ICU4
----------->
GT1
--------->
ICU4
--------->
MYB52(1)
<---------
ATHB51
<---------
MYB52(2)
<---------
ARR11(3)
------>
GT1
<---------
ATHB12
---------->
DOF2
<---------
YAB1
<---------
GLK1(2)
gaaataatgaacattatacacatgaaatcaatttgtgactaacaaagttaataaaacatctcataaatgaaaaaacacaattacaggttctatattagcc
11252800
--------->
REM1(1)
--------->
GLK1(2)
<---------
WOX13(1)
---------------
<---------
GLK1(2)
<---------
ANAC58
<--------------
--------->
ARR14(2)
<---------
ANAC58
<---------------
<---------
ARR14(2)
--------->
ATHB12
<---------
O2
<---------------
<------
ZmHOX2a(1)
--------->
GLK1(2)
--------->
O2
----------------
<---------
YAB1
<---------
GLK1(2)
--------->
CCA1(2)
<-----------
GT1
aaacttcagaattaggattctgccaaaattcagaatctcacaaattgattgctataacagagagacgagactatattgtcgatttttgctacatttagta
11252900
------>
MYB46(1)
--------->
MYB52(1)
<-----------
GT1
--------->
AHL20(2)
--------->
ANAC58
--------->
WOX13(1)
--------->
ANAC58
--------->
ANAC58
--------->
ARR14(2)
--------->
ANAC46
<---------
ARR14(2)
--------->
ANAC58
>
AGL15
--------->
WOX13(1)
<---------
TOE2(3)
---------->
DOF2
-
AGL15
<------
ZmHOX2a(2)
>>>>>>>>>
MYB1
<------
MYB83
--
AGL2
--------->
ARR11(3)
>>>>>>>>>
MYB2
<------
MYB46(1)
--
AGL3
--------->
At4g35610
------>
MYB83
<--------
P
--------->
DAG2
->
AGL2
<---------
At4g35610
<---------
MYB59
<---------
TOE2(2)
<--------
atgagattacgccctaatttcaactgagatcaagcaattaaacctaactgagattaatcgcgattagaaatcaacacaggttggattaaaaggggaaatg
11253000
<------
NtERF2
--------->
RAP2.3(1)
<---------
RAP2.3(1)
<---------
DEAR3(1)
<---------
RAP2.3(2)
<---------
ANAC46
<---------
RRTF1(3)
--------->
DEAR3(1)
<---------
RAP2.3(3)
--------->
ATERF1(1)
<---------
ABI4(1)
--------->
ARR14(2)
<---------
ORA47(2)
<---------
ARR14(2)
<---------
ERF1
--------->
LBD16
<---------
DEAR4(2)
<-----------------
AGL1
------>
NtERF2
<-----------------
AG
<------
NtERF2
--------->
LBD16
----------------->
AGL1
<---------
ATERF1(1)
--------->
At4g35610
--------->
ANAC58
<---------
LBD16
<---------
RAP2.3(1)
<---------
At4g35610
----------------->
AGL1
------->
TEIL
<---------
ORA47(2)
<------
ZmHOX2a(1)
--------->
ANAC58
--
--------->
MYB52(1)
<---------
ATERF1(1)
<---------
ANAC46
<------
NtERF2
<-
<---------
SPL7
<---------
RAP2.3(3)
<------
NtERF2
------>
NtERF2
--
<---------------
AtSPL8
--------->
ANAC46
------>
NtERF2
--------->
DEAR3(1)
<-
<---------------
AtSPL3
<---------
DEAR3(1)
<---------
LBD16
<---------
DEAR3(1)
--
<------
ZmHOX2a(1)
<---------
RAP2.3(2)
<---------
DEAR3(1)
----------->
HVH21
-----
<---------
TOE2(3)
--------->
CCA1(2)
<---------
GLK1(2)
--------->
CCA1(2)
<---------
LBD16
<
-
ARR14(2)
--------------->
AGL15
<---------
DEAR4(2)
--------->
DEAR3(1)
<----------
ID1
--------->
GLK1(1)
gtttaggatgtac
cggaattgggagatagacggcggcgaaacagactcgcggcgaggagagcggagagacgagaagaggcgacgaaatcgggaaatcgag
11253100
<------------
CBF
<------------
ATHB5
<--------
ATHB1
--------->
ATHB12
--------->
ATHB51
<---------
ICU4
----------->
GT1
-------->
HAHB4
*
TSS
--------->
AHL20(2)
--------->
ALFIN1
<---------
YAB1
<---------
HSFB2a(2)
<---------
AHL20(2)
------->
MYB52(2)
--------->
ICU4
--------
MYB46(3)
--------->
AHL20(1)
------->
MYB55(2)
<---------
AHL20(2)
----------
RAV1(1)
--------->
AHL20(2)
<----
------->
MYB111(2)
--------->
DAG2
<---------
ATHB51
<------------
CBF
------->
MYB.PH3(2)
---------->
DOF2
---------->
DOF2
<---------
AHL20(1)
--------->
ATHB12
-------
GAMYB
----------->
GT1
----------->
GT1
----------->
GT1
--------->
ICU4
tttgttggagaag
tgagggaaaaaaaagaagagaaattagcaaaaaggaagaaaataaaataattgggcctactctaactaggcccttattgggcttagg
11253200
<-------
TEIL
--------->
ARR14(2)
<---------
At4g35610
<---------
ARR14(2)
<-----------
GT1
--------->
At4g35610
<---------
TOE2(3)
<---------
AHL20(2)
--------->
bZIP60(1)
----
----------->
GT1
<------
ZmHOX2a(1)
--------->
AHL20(2)
--------->
ALFIN1
------>
ZmHOX2a(1)
--
ZmHOX2a(1)
<-----------
GT1
--------->
AHL20(2)
<------
ZmHOX2a(2)
<---------
bZIP60(1)
-----
aaggaagaaaaatgtttttaggattcgatgatacatgtaattaactaattaagagatcgattgtttgaactgtggtgatgtctctgctccttccatagat
11253300
<
<---------
ICU4
<------
ZmHOX2a(2)
-
--------->
TOE2(3)
--------->
ARR11(3)
---------
--------->
GLK1(2)
--------->
DAG2
------->
TEIL
----------->
RAV1(1)
---------
<---------
AHL20(2)
---------->
DOF2
--------->
AtLEC2
<-----------
RAV1(1)
---------
------->
GT1
<---------
AHL20(2)
<---------
WOX13(1)
--------->
ALFIN1
<--------
------>
GT1
--------->
AHL20(2)
<---------
YAB1
<---------
AHL20(2)
<---------
LBD16
--
gttaaataatctaaaattaaaaatttcgataaaaagttctgatggatcatgcatctaaattttaaaatgtgttgccaacattcagggagacaacacgaca
11253400
--------->
AHL20(2)
<---------
ARR11(3)
--------->
AHL20(1)
--------->
LBD16
<---------
ANAC58
<---------
ANAC58
<---------
AHL20(2)
<---------
WOX13(1)
<---------
AHL20(1)
<---------
YAB1
--------->
ATHB12
<---------
AHL20(2)
--------->
YAB1
<---------
AHL20(1)
--------->
ANAC58
---------
AHL20(2)
--------->
AHL20(1)
--------->
ANAC58
-------->
AHL20(2)
<---------
AHL20(2)
--------->
ANAC46
----------->
GT1
>
ANAC58
<---------
AHL20(2)
<---------
LBD16
---------->
DOF2
<---------
YAB1
>
ANAC58
--------->
AHL20(2)
<---------
ARR14(2)
--------->
YAB1
--------->
ATHB51
>
ANAC46
----------->
GT1
<---------
AHL20(2)
--------->
ARR11(3)
<---------
ICU4
--
ID1
<-----------
GT1
--------->
AHL20(1)
--------->
ARR14(2)
<---------
ATHB12
<---------
At4g35610
------->
AHL20(2)
XXXXXXXXXXXXXXXXXXXX>
MIR1886.2
--------->
AHL20(2)
------>
NtERF2
aatttataattttcaatttggaaaataaaatatttgattgctagacccgcaaaatatattcaaatcaaaagttacaaatgcagcccataatttttgtatg
11253500
<---------
HSFB2a(2)
<---------
ARR14(2)
------>
MYB46(1)
------>
MYB83
--------------->
AGL15
<---------------
AGL15
<---------
MYB59
<---------
MYB111(1)
----------------->
AGL1
----------------->
AGL2
----------------->
AG
--------->
ANAC58
-------->
P
--------->
ANAC58
--------->
MYB46(3)
<---------------
AtSPL8
<-------
TEIL
--------
<-------
TEIL
--------->
ARR14(2)
--------------->
AtSPL8
--------->
ARR14(2)
--------->
ARR14(1)
--------->
AHL20(2)
<---------
TOE2(3)
<---------
ARR14(2)
<---------
GLK1(2)
--------->
HSFB2a(2)
---------->
DOF2
<---------
GLK1(2)
--------->
ARR11(1)
--------->
LBD16
<---------
At5g28300
<-------
TEIL
--------->
HSFB2a(2)
ctcttagattcgaactaccaaatccagaaataaaacacaaaattacagtaaaggtactcaaaattcatatcaaatttcgagattcgtcgaagttcgaaag
11253600
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AGI:
At2g26430.1
Description:
RCY1 (ARGININE-RICH CYCLIN 1); cyclin-dependent protein kinase regulator. Identical to Cyclin-L1-1 (CYCL1-1) [Arabidopsis Thaliana] (GB:Q8RWV3;GB:O48710;GB:Q94L33); similar to cyclin family protein [Arabidopsis thaliana] (TAIR:AT5G45190.1); similar to unnamed protein product [Vitis vinifera] (GB:CAO15428.1); contains InterPro domain Cyclin L (InterPro:IPR017060); contains InterPro domain Cyclin (InterPro:IPR006670); contains InterPro domain Transcription regulator cyclin (InterPro:IPR015429); contains InterPro domain Cyclin, N-terminal (InterPro:IPR006671); contains InterPro domain Cyclin-like (InterPro:IPR011028)
Range:
from: 11250297
to: 11253113
Orientation: Reverse
Links:
TAIR
MIPS
Please cite the corresponding
publications
when using AthaMap.