Home Tools   - Search   - Colocalization   - Gene Analysis   - Gene Identification   - Small RNA Targets   - MicroRNA Targets Description Documentation Citations Downloads Publications History Contact Links Disclaimer	Search   Chromosome 1 Chromosome 2 Chromosome 3 Chromosome 4 Chromosome 5    Position Exon region Intron region UTR region AGI % Restriction to highly conserved TF binding sites (0-100)   Go to graphical and table display  1        10        20        30        40        50        60        70        80        90        100                                         -------->P                                 --------->ANAC58                     --------->At4g35610                     --------->ZAT2    ------>MYB83                     <---------At4g35610    --------->YAB1                  ----------->RAV1(2)  ------>MYB46(1)                  --------->At4g35610<---------MYB111(1)                  <---------At4g35610--------->AtMYB61                                        -------                  <---------ZAT2 --------->ANAC46                                             -------        --------->WOX13(1)     <-----------GT1                                                -------      <---------ATHB12      --------->ARR14(2)                <------NtERF2        <---------HSFB2a(2) ----->ARR11(3)   --------->ZAT2 --------->ANAC58            ------>NtERF2       <---------ATHB12 ------ARR11(3) <-----------RAV1(2)  <---------MYB59     <---------O2    --------->ARR14(2) <-------- -ANAC55(2)  <-----------GT1<---------ARR14(2)           --------->O2   <---------GLK1(1) <---------ALFIN1   atcttcccatcaattacaccagctgctgcaaattcacgacctactctcatattagagactcgtcgccaagtatgaaatctgcaatcgagaacccacacgc  9361300                                 <---------ANAC55(2)                                 --------->ANAC46                                 --------->ANAC58                       --------->MYB46(3)         <---------O2 <------ZmHOX2a(2)         --------->O2--------->ARR11(3)         <---------TGA1a         --------->ANAC55(2)         --------->TGA1a         --------->ANAC55(1)         --------->bZIP60(2)     --------->ANAC58                   ==========================HOX2a_HOX2a         --------->ANAC58        ----------->GT1                    ------>ZmHOX2a(2)         --------->ANAC55(2)  <------ZmHOX2a(2)                    ===========================HOX2a_HOX2a         --------->ANAC58  --------->DEAR3(1)                      <------ZmHOX2a(2)         <---------ANAC55(2) <-----------HVH21      --------->AtMYB61          <---------DEAR3(1) -->ANAC58           <---------ARR11(3)           -------->P      <---------ARR14(2) -->ANAC58           --------->ARR14(2)       --------->ARR14(2)  --------->ARR14(2)   <------ZmHOX2a(1) -->ANAC46           <---------ARR14(2)       ------->TEIL    <---------At4g35610     <----------ID1 -ALFIN1<-------TEIL --------->AGP1  <---------CCA1(2)        --------->At4g35610--------->At5g28300   tcgaagaaggcacgtctctaatagatccaccgatcacgtaaatctctgaatctaccacaacgtaagcggatccgactagagacggtgaaggacaagatgg  9361400                                                                          <-----------RAV1(2)                                                                         <-------TEIL                                                                  ====================RAV                                                                  ------->TEIL                                                                  ----------->RAV1(1)                                                               --------->ANAC58                                                               --------->ANAC58                                                               --------->ANAC55(1)                                                               <---------ANAC55(2)   --------->ANAC46                                                               --------->ANAC46      --------->ANAC55(2)                                   <---------TOE1(3)         <---------ALFIN1       <---------LBD16                                   <---------TOE2(3)        ------>MYB83--------->GLK1(2)                                   --------->DAG2           ------>MYB46(1)       --------->ARR14(2)                               <---------HSFB2a(2)          -------->P <---------GLK1(2)                          <---------ANAC58                --------->AtMYB61       <---------ARR14(2)                  <---------ARR14(2)                     --------->MYB46(3)  <------ZmHOX2a(1) <-----                  --------->ARR14(2)   <-------TEIL   --------->ZAT18  --------->ARR14(2)    --------       --------->ANAC58   <---------ANAC58            <---------ZAT14  <---------ARR14(2)<---------WOX13(1)       --------->ANAC58<---------MYB52(1)       <------ZmHOX2a(1)--------->ANAC46--------->CCA1(2)   gattggaacaagcattttcgaattcgttgagttcgataaggttcgatggaggagagtgaaccaacacgcaccagattcaggaggtatacggattgctacg  9361500                                <---------TGA1a                                <---------O2                                <---------ANAC58                                --------->TGA1a                                --------->O2                           <---------At4g35610                           --------->At4g35610                      <---------O2                      ====================bZIP_bZIP                      <---------TGA1a                      --------->O2                      --------->TGA1a                    ------>NtERF2      <------NtERF2                 ---------->DOF2                   --------->DEAR3(1)<---------ANAC58             ------>ZmHOX2a(2)                 -                  --------->ATERF1(1)<---------ANAC46             =================================HOX2a_HOX2a                  --------->DEAR3(2) <---------ANAC58            <------ZmHOX2a(2)           <-------  <------ZmHOX2a(1)----------->HVH21<------NtERF2                ==================================HOX2a_HOX2a ----ANAC46       <------NtERF2 ================================================bZIP_DOF     -------- ------->AGL15  <---------PCF2  <---------ANAC58     <---------REM1(1)                      <------ZmHOX2a(1)   tagaggatgttttcagtggctccgacgagagctctcgtggcgtagagaagaggtgatgttgggagagatcggaaagtcttggagacgagtgagaggattg  9361600                                                                                                    -                                                                                                  ---                                                                                                  <--                                                                                                  <--                                                                                                 ----                                                                                                 <---                                                                                                -----                                                                                                <----                                                                                              <------                                                                                <XXXXXXXXXXXXXXXXXXXXMIR841                                                                      --------->DEAR3(1)     --------                            <---------ZAT2                            <---------DEAR3(1) <---------DEAR3(2)                            --------->At4g35610                      --------->ATERF1(1) --------->MYB55(2)                            <---------At4g35610                      <---------LBD16     <---------MYB46(3)                       --------->ANAC58                 ------->GAMYB<------NtERF2      --------->ALFIN1                       --------->ANAC58                --------->ANAC58         <XXXXXXXXXXXXXXXXXXXXMIR841B                    <---------ZAT2                     --------->ANAC58 <---------MYB52(1)  <-------TEIL                   --------->ANAC58                  --------->MYB52(1)--------->LBD16  <---------AtMYB61 ---------->GT1    --------->ANAC58            --------->YAB1       <---------RRTF1(1)--------->LBD16 --ARR14(2)    --------->ANAC58               <---------YAB1        <---------RAP2.3(1)<---------MYB52(1) ->ARR14(2)    --------->ANAC58             <---------At4g35610     ------>NtERF2   <---------LBD16--   gatagtgacatctagggacgcgagcaaggcaactgagagcaacgtcttctgataacaacggaatcaattgcgccggtgattttgtttccggtggttcgtc  9361700                ------>NtERF2               --------->ANAC46               --------->RAP2.6(2)               --------->RAP2.3(2)               >>>>>>>>>AtERF-5               --------->RAP2.3(3)               >>>>>>>>>AtERF-1               >>>>>>>>>AtERF-4         <---------REM1(1)       <-------GAMYB   <---------ZAT2   --------->ZAT2   <---------At4g35610   --------->GLK1(1)     ------>ZmHOX2a(2)                                         -------->ATHB1 <------NtERF2 >>>>>>>>>AtERF-3                                                    <---------ICU4 -------->LBD16--------->DEAR3(1)                                                  --------->ATHB51 ------>ATERF1(1)        *TSS                                           <---------AHL20(2) -------LBD16  >>>>>>>>>AtERF-2                                        <---------AHL20(1)    <------MYB83 ----NtERF2   --------->RAP2.3(1)                                      <---------AHL20(2)    <------- -->NtERF2    --------->ATERF1(1)                                      --------->AHL20(1)    <------MYB46(1) ------ATERF1(1)<---------RAP2.6(3)                                    --------->AHL20(2)   --------- ---->DEAR3(1)--------->ERF1<---------MYB52(1)                  ----------->GT1   <---------ATHB51 -----DEAR3(1)--------->MYB46(3)                          <---------AHL20(2)      --------->ICU4 -----HVH21  <---------At4g35610                    ------------>CBF  --------->AHL20(2)  <---------MYB52(1) ->MYB52(2)  <---------ATERF1(1)             <-----------GT1---------->DOF2       <---------ATHB12 ------->DEAR3(1)<------NtERF2          <----------DOF2  --------->AHL20(2)   ------------>CBF   gccggagctcgttgtagccgccattgatccgttttgatcagtctttatttccttctcaatttaaaagagaaaattaattttgcaattattcggttcggtt  9361800                                                                                                    <                                                                                                <----                                                                                                <----                                                                                                -----                                                                                                -----                                                                                                <----                                                                                                -----                                                                                                <----                                                                               <---------MYB52(1)   <                                                                               --------->DOF5.7(2)---                                                                              <---------RAP2.6(3) ---                                                                              <-------GAMYB     =====                                                                              =======================                                ----------->GT1                       <------------CBF          <----                              ---------->DOF2                         >>>>>>>>>ARR1             >>>>>                      --------->LBD16                                 >>>>>>>>>ARR2             <----                      <---------HSFB2a(2)                            --------->ATHB12           <----                      --------->HSFB2a(2)                           <---------YAB1            <------                  <---------ARR14(2)                             --------->ARR14(2)          -------- --DEAR3(2)       --------->ARR14(2)                             <---------ARR14(2)        --------->At4g35610 >MYB59          <---------GLK1(1)   <---------YAB1       <---------AHL20(2) <---------ANAC46--------   cgattcgattaagtcagacaaatccgagaagagaaagttattttagaaactaaaccgtatttaaaccgatatgattgtgccgttatctacaagtgctgac  9361900      --------->ANAC58      --------->ANAC58   <------NtERF2  --------->LBD16 <---------ANAC58 <---------ANAC46 <---------ANAC58 ---------LBD16 -----bZIP60(1) -----TGA1a ---->bZIP60(1) ---->TGA1a                         ------->MYC3 -----ANAC58                        ------->MYC2 ---->O2                            <-------MYC3 -----O2--------->YAB1              <-------MYC2 ------NtERF2                       ------->PIF5 -------->HVH21                     <-------PIF5                       ----------------->AGL1 ------>ALFIN1                     <---------ALFIN1                    ----------------->AG ===================================bZIP_DOF                       <---------HSFC1(2) =====MYC_MYB            ---------->DOF2    ------>ZmHOX2a(1)      --------->HSFC1(2) -----ANAC46          *TSS    --------->ANAC58                    <---------O2 >>>>>AtbZIP1        <---------ANAC46   <----------DOF2           --------->O2 -----bZIP60(2) <---------ANAC46   --------->ANAC58              <---------TOE1(2) -----ANAC58  ------>ZmHOX2a(2)    --------->ANAC58             ------>NtERF2 ---TGA2(2)   =====================================HOX2a_HOX2a --------->DEAR3(1) --->HVH21  <---------ARR11(3)--------->ANAC58                 ----------->HVH21 --->TGA1   --------->ARR11(3)--------->ANAC46               ------>ZmHOX2a(1)       >>>>>>>>>TBF1   gtggcgggaagcatgatctcgtggtttgaaagaagccacgcgcttcctcgtcttcccttcgtcctccgacgtttccaattgggagaagaagaagacgacg  9362000                                                                              <---------At4g35610                                                   <---------DAG2             --------->At4g35610                        <-------GAMYB              <----------DOF2    <---------WOX13(1)         ----                        --------->At4g35610     --------->ARR11(3)  <---------ICU4               ----                       <---------MYB46(3) <---------ANAC58          --------->ATHB12             <---             <---------GLK1(2)            <---------ANAC58         <---------YAB1         <---------MYB52(1)         <---------At4g35610     --------->YAB1 <---------ARR11(3) --------->ICU4  <----------DOF2   atgaagcatttatctgattctgggtctgttgaaaatcaaaattttcttgagaactttttttgaagagttatgattgcattagctgcttcttcgttgggga  9362100                      <---------MYB52(1)                     <-----------HVH21         --------->ANAC58                    --------->ANAC46           --------->ANAC46            <-----------GT1                    ------->GAMYB   --------->LBD16                     <---------ARR14(2)                   --------->MYB46(3)          --------->ANAC58         --------->ARR14(2)            <---------ANAC46       <---------ANAC46                   <---------MYB46(3)         <---------ANAC58         <---------LBD16                   --------->At4g35610         <---------ANAC58      <---------GLK1(2)                    <---------At4g35610 ------>TaMYB80    <------------AtMYB77       --------->LBD16   --------->ANAC46            <<<<<<<<<TBF1 ----->ARR14(2)   <---------At5g28300<-----------HVH21          --------->ANAC58         <<<<<<<<<TBF1 ------ARR14(2)  <-----------GT1--------->GLK1(2)               --------->ANAC58   ---------->ID1   -   atacaccgattgcttcgtttaaccgtcattttagattccggttacatccacgaaaccctctgatacaagcagcggtttcaccttcgtcttcttcttcttc  9362200  Previous    Next  AGI:  At2g21950.1    Description:  SKIP6 (SKP1 INTERACTING PARTNER 6); ubiquitin-protein ligase. Identical to F-box/kelch-repeat protein SKIP6 (SKIP6) [Arabidopsis Thaliana] (GB:Q9SJ04;GB:Q9FUZ9); similar to kelch repeat-containing F-box family protein [Arabidopsis thaliana] (TAIR:AT4G39550.1); similar to unnamed protein product [Vitis vinifera] (GB:CAO71765.1); contains InterPro domain Kelch repeat type 1 (InterPro:IPR006652); contains InterPro domain Kelch-type beta propeller (InterPro:IPR015915); contains InterPro domain Cyclin-like F-box (InterPro:IPR001810); contains InterPro domain Kelch related (InterPro:IPR013089); contains InterPro domain Galactose oxidase/kelch, bet Range:  from: 9360254    to: 9361725    Orientation: Reverse Links:  TAIR  MIPS    AGI:  At2g21960.1    Description:  similar to unknown protein [Arabidopsis thaliana] (TAIR:AT1G56180.1); similar to unnamed protein product [Vitis vinifera] (GB:CAO71767.1) Range:  from: 9361922    to: 9364171    Orientation: Forward Links:  TAIR  MIPS      Please cite the corresponding publications when using AthaMap.
	printer-friendly version