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Chromosome 1
Chromosome 2
Chromosome 3
Chromosome 4
Chromosome 5
Position
Exon region
Intron region
UTR region
AGI
% Restriction to highly conserved TF binding sites (0-100)
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1 10 20 30 40 50 60 70 80 90 100
-------->
P
--------->
ANAC58
--------->
At4g35610
--------->
ZAT2
------>
MYB83
<---------
At4g35610
--------->
YAB1
----------->
RAV1(2)
------>
MYB46(1)
--------->
At4g35610
<---------
MYB111(1)
<---------
At4g35610
--------->
AtMYB61
-------
<---------
ZAT2
--------->
ANAC46
-------
--------->
WOX13(1)
<-----------
GT1
-------
<---------
ATHB12
--------->
ARR14(2)
<------
NtERF2
<---------
HSFB2a(2)
----->
ARR11(3)
--------->
ZAT2
--------->
ANAC58
------>
NtERF2
<---------
ATHB12
------
ARR11(3)
<-----------
RAV1(2)
<---------
MYB59
<---------
O2
--------->
ARR14(2)
<--------
-
ANAC55(2)
<-----------
GT1
<---------
ARR14(2)
--------->
O2
<---------
GLK1(1)
<---------
ALFIN1
atcttcccatcaattacaccagctgctgcaaattcacgacctactctcatattagagactcgtcgccaagtatgaaatctgcaatcgagaacccacacgc
9361300
<---------
ANAC55(2)
--------->
ANAC46
--------->
ANAC58
--------->
MYB46(3)
<---------
O2
<------
ZmHOX2a(2)
--------->
O2
--------->
ARR11(3)
<---------
TGA1a
--------->
ANAC55(2)
--------->
TGA1a
--------->
ANAC55(1)
--------->
bZIP60(2)
--------->
ANAC58
==========================
HOX2a_HOX2a
--------->
ANAC58
----------->
GT1
------>
ZmHOX2a(2)
--------->
ANAC55(2)
<------
ZmHOX2a(2)
===========================
HOX2a_HOX2a
--------->
ANAC58
--------->
DEAR3(1)
<------
ZmHOX2a(2)
<---------
ANAC55(2)
<-----------
HVH21
--------->
AtMYB61
<---------
DEAR3(1)
-->
ANAC58
<---------
ARR11(3)
-------->
P
<---------
ARR14(2)
-->
ANAC58
--------->
ARR14(2)
--------->
ARR14(2)
--------->
ARR14(2)
<------
ZmHOX2a(1)
-->
ANAC46
<---------
ARR14(2)
------->
TEIL
<---------
At4g35610
<----------
ID1
-
ALFIN1
<-------
TEIL
--------->
AGP1
<---------
CCA1(2)
--------->
At4g35610
--------->
At5g28300
tcgaagaaggcacgtctctaatagatccaccgatcacgtaaatctctgaatctaccacaacgtaagcggatccgactagagacggtgaaggacaagatgg
9361400
<-----------
RAV1(2)
<-------
TEIL
====================
RAV
------->
TEIL
----------->
RAV1(1)
--------->
ANAC58
--------->
ANAC58
--------->
ANAC55(1)
<---------
ANAC55(2)
--------->
ANAC46
--------->
ANAC46
--------->
ANAC55(2)
<---------
TOE1(3)
<---------
ALFIN1
<---------
LBD16
<---------
TOE2(3)
------>
MYB83
--------->
GLK1(2)
--------->
DAG2
------>
MYB46(1)
--------->
ARR14(2)
<---------
HSFB2a(2)
-------->
P
<---------
GLK1(2)
<---------
ANAC58
--------->
AtMYB61
<---------
ARR14(2)
<---------
ARR14(2)
--------->
MYB46(3)
<------
ZmHOX2a(1)
<-----
--------->
ARR14(2)
<-------
TEIL
--------->
ZAT18
--------->
ARR14(2)
--------
--------->
ANAC58
<---------
ANAC58
<---------
ZAT14
<---------
ARR14(2)
<---------
WOX13(1)
--------->
ANAC58
<---------
MYB52(1)
<------
ZmHOX2a(1)
--------->
ANAC46
--------->
CCA1(2)
gattggaacaagcattttcgaattcgttgagttcgataaggttcgatggaggagagtgaaccaacacgcaccagattcaggaggtatacggattgctacg
9361500
<---------
TGA1a
<---------
O2
<---------
ANAC58
--------->
TGA1a
--------->
O2
<---------
At4g35610
--------->
At4g35610
<---------
O2
====================
bZIP_bZIP
<---------
TGA1a
--------->
O2
--------->
TGA1a
------>
NtERF2
<------
NtERF2
---------->
DOF2
--------->
DEAR3(1)
<---------
ANAC58
------>
ZmHOX2a(2)
-
--------->
ATERF1(1)
<---------
ANAC46
=================================
HOX2a_HOX2a
--------->
DEAR3(2)
<---------
ANAC58
<------
ZmHOX2a(2)
<-------
<------
ZmHOX2a(1)
----------->
HVH21
<------
NtERF2
==================================
HOX2a_HOX2a
----
ANAC46
<------
NtERF2
================================================
bZIP_DOF
--------
------->
AGL15
<---------
PCF2
<---------
ANAC58
<---------
REM1(1)
<------
ZmHOX2a(1)
tagaggatgttttcagtggctccgacgagagctctcgtggcgtagagaagaggtgatgttgggagagatcggaaagtcttggagacgagtgagaggattg
9361600
-
---
<--
<--
----
<---
-----
<----
<------
<XXXXXXXXXXXXXXXXXXXX
MIR841
--------->
DEAR3(1)
--------
<---------
ZAT2
<---------
DEAR3(1)
<---------
DEAR3(2)
--------->
At4g35610
--------->
ATERF1(1)
--------->
MYB55(2)
<---------
At4g35610
<---------
LBD16
<---------
MYB46(3)
--------->
ANAC58
------->
GAMYB
<------
NtERF2
--------->
ALFIN1
--------->
ANAC58
--------->
ANAC58
<XXXXXXXXXXXXXXXXXXXX
MIR841B
<---------
ZAT2
--------->
ANAC58
<---------
MYB52(1)
<-------
TEIL
--------->
ANAC58
--------->
MYB52(1)
--------->
LBD16
<---------
AtMYB61
---------->
GT1
--------->
ANAC58
--------->
YAB1
<---------
RRTF1(1)
--------->
LBD16
--
ARR14(2)
--------->
ANAC58
<---------
YAB1
<---------
RAP2.3(1)
<---------
MYB52(1)
->
ARR14(2)
--------->
ANAC58
<---------
At4g35610
------>
NtERF2
<---------
LBD16
--
gatagtgacatctagggacgcgagcaaggcaactgagagcaacgtcttctgataacaacggaatcaattgcgccggtgattttgtttccggtggttcgtc
9361700
------>
NtERF2
--------->
ANAC46
--------->
RAP2.6(2)
--------->
RAP2.3(2)
>>>>>>>>>
AtERF-5
--------->
RAP2.3(3)
>>>>>>>>>
AtERF-1
>>>>>>>>>
AtERF-4
<---------
REM1(1)
<-------
GAMYB
<---------
ZAT2
--------->
ZAT2
<---------
At4g35610
--------->
GLK1(1)
------>
ZmHOX2a(2)
-------->
ATHB1
<------
NtERF2
>>>>>>>>>
AtERF-3
<---------
ICU4
-------->
LBD16
--------->
DEAR3(1)
--------->
ATHB51
------>
ATERF1(1)
*
TSS
<---------
AHL20(2)
-------
LBD16
>>>>>>>>>
AtERF-2
<---------
AHL20(1)
<------
MYB83
----
NtERF2
--------->
RAP2.3(1)
<---------
AHL20(2)
<-------
-->
NtERF2
--------->
ATERF1(1)
--------->
AHL20(1)
<------
MYB46(1)
------
ATERF1(1)
<---------
RAP2.6(3)
--------->
AHL20(2)
---------
---->
DEAR3(1)
--------->
ERF1
<---------
MYB52(1)
----------->
GT1
<---------
ATHB51
-----
DEAR3(1)
--------->
MYB46(3)
<---------
AHL20(2)
--------->
ICU4
-----
HVH21
<---------
At4g35610
------------>
CBF
--------->
AHL20(2)
<---------
MYB52(1)
->
MYB52(2)
<---------
ATERF1(1)
<-----------
GT1
---------->
DOF2
<---------
ATHB12
------->
DEAR3(1)
<------
NtERF2
<----------
DOF2
--------->
AHL20(2)
------------>
CBF
gccggagctcgttgtagccgccat
t
gatccgttttgatcagtctttatttccttctcaatttaaaagagaaaattaattttgcaattattcggttcggtt
9361800
<
<----
<----
-----
-----
<----
-----
<----
<---------
MYB52(1)
<
--------->
DOF5.7(2)
---
<---------
RAP2.6(3)
---
<-------
GAMYB
=====
=======================
----------->
GT1
<------------
CBF
<----
---------->
DOF2
>>>>>>>>>
ARR1
>>>>>
--------->
LBD16
>>>>>>>>>
ARR2
<----
<---------
HSFB2a(2)
--------->
ATHB12
<----
--------->
HSFB2a(2)
<---------
YAB1
<------
<---------
ARR14(2)
--------->
ARR14(2)
--------
--
DEAR3(2)
--------->
ARR14(2)
<---------
ARR14(2)
--------->
At4g35610
>
MYB59
<---------
GLK1(1)
<---------
YAB1
<---------
AHL20(2)
<---------
ANAC46
--------
cgattcgattaagtcagacaaatccgagaagagaaagttattttagaaactaaaccgtatttaaaccgatatgattgtgccgttatctacaagtgctgac
9361900
--------->
ANAC58
--------->
ANAC58
<------
NtERF2
--------->
LBD16
<---------
ANAC58
<---------
ANAC46
<---------
ANAC58
---------
LBD16
-----
bZIP60(1)
-----
TGA1a
---->
bZIP60(1)
---->
TGA1a
------->
MYC3
-----
ANAC58
------->
MYC2
---->
O2
<-------
MYC3
-----
O2
--------->
YAB1
<-------
MYC2
------
NtERF2
------->
PIF5
-------->
HVH21
<-------
PIF5
----------------->
AGL1
------>
ALFIN1
<---------
ALFIN1
----------------->
AG
===================================
bZIP_DOF
<---------
HSFC1(2)
=====
MYC_MYB
---------->
DOF2
------>
ZmHOX2a(1)
--------->
HSFC1(2)
-----
ANAC46
*
TSS
--------->
ANAC58
<---------
O2
>>>>>
AtbZIP1
<---------
ANAC46
<----------
DOF2
--------->
O2
-----
bZIP60(2)
<---------
ANAC46
--------->
ANAC58
<---------
TOE1(2)
-----
ANAC58
------>
ZmHOX2a(2)
--------->
ANAC58
------>
NtERF2
---
TGA2(2)
=====================================
HOX2a_HOX2a
--------->
DEAR3(1)
--->
HVH21
<---------
ARR11(3)
--------->
ANAC58
----------->
HVH21
--->
TGA1
--------->
ARR11(3)
--------->
ANAC46
------>
ZmHOX2a(1)
>>>>>>>>>
TBF1
gtggcgggaagcatgatctcg
tggtttgaaagaagccacgcgcttcctcgtcttcccttcgtcctccgacgtttccaattgggagaagaagaagacgacg
9362000
<---------
At4g35610
<---------
DAG2
--------->
At4g35610
<-------
GAMYB
<----------
DOF2
<---------
WOX13(1)
----
--------->
At4g35610
--------->
ARR11(3)
<---------
ICU4
----
<---------
MYB46(3)
<---------
ANAC58
--------->
ATHB12
<---
<---------
GLK1(2)
<---------
ANAC58
<---------
YAB1
<---------
MYB52(1)
<---------
At4g35610
--------->
YAB1
<---------
ARR11(3)
--------->
ICU4
<----------
DOF2
atgaagcatttatctgattctgggtctgttgaaaatcaaaattttcttgagaactttttttgaagagtt
atgattgcattagctgcttcttcgttgggga
9362100
<---------
MYB52(1)
<-----------
HVH21
--------->
ANAC58
--------->
ANAC46
--------->
ANAC46
<-----------
GT1
------->
GAMYB
--------->
LBD16
<---------
ARR14(2)
--------->
MYB46(3)
--------->
ANAC58
--------->
ARR14(2)
<---------
ANAC46
<---------
ANAC46
<---------
MYB46(3)
<---------
ANAC58
<---------
LBD16
--------->
At4g35610
<---------
ANAC58
<---------
GLK1(2)
<---------
At4g35610
------>
TaMYB80
<------------
AtMYB77
--------->
LBD16
--------->
ANAC46
<<<<<<<<<
TBF1
----->
ARR14(2)
<---------
At5g28300
<-----------
HVH21
--------->
ANAC58
<<<<<<<<<
TBF1
------
ARR14(2)
<-----------
GT1
--------->
GLK1(2)
--------->
ANAC58
---------->
ID1
-
atacaccgattgcttcgtttaaccgtcattttagattccggttacatccacgaaaccctctgatacaagcagcggtttcaccttcgtcttcttcttcttc
9362200
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AGI:
At2g21950.1
Description:
SKIP6 (SKP1 INTERACTING PARTNER 6); ubiquitin-protein ligase. Identical to F-box/kelch-repeat protein SKIP6 (SKIP6) [Arabidopsis Thaliana] (GB:Q9SJ04;GB:Q9FUZ9); similar to kelch repeat-containing F-box family protein [Arabidopsis thaliana] (TAIR:AT4G39550.1); similar to unnamed protein product [Vitis vinifera] (GB:CAO71765.1); contains InterPro domain Kelch repeat type 1 (InterPro:IPR006652); contains InterPro domain Kelch-type beta propeller (InterPro:IPR015915); contains InterPro domain Cyclin-like F-box (InterPro:IPR001810); contains InterPro domain Kelch related (InterPro:IPR013089); contains InterPro domain Galactose oxidase/kelch, bet
Range:
from: 9360254
to: 9361725
Orientation: Reverse
Links:
TAIR
MIPS
AGI:
At2g21960.1
Description:
similar to unknown protein [Arabidopsis thaliana] (TAIR:AT1G56180.1); similar to unnamed protein product [Vitis vinifera] (GB:CAO71767.1)
Range:
from: 9361922
to: 9364171
Orientation: Forward
Links:
TAIR
MIPS
Please cite the corresponding
publications
when using AthaMap.