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Chromosome 1
Chromosome 2
Chromosome 3
Chromosome 4
Chromosome 5
Position
Exon region
Intron region
UTR region
AGI
% Restriction to highly conserved TF binding sites (0-100)
Go to graphical and table display
1 10 20 30 40 50 60 70 80 90 100
<------
MYB83
<------
MYB46(1)
<---------
TOE2(3)
--------->
MYB59
<---------
MYB46(3)
<---------
ICU4
<--
-------->
MYB52(1)
--------->
YAB1
--------->
AHL20(2)
--------
ARR14(2)
------>
ZmHOX2a(1)
<-----------
GT1
--------->
AHL20(2)
------->
ARR14(2)
--------->
HSFB2a(2)
<---------
At5g28300
--------->
AHL20(2)
----
ZmHOX2a(1)
--------->
At4g35610
<-----------
GT1
<----------
DOF2
<--
-
ZmHOX2a(1)
>>>>>>>>>
TBF1
<---------
HSFB2a(2)
<-----------
GT1
----------->
GT1
<xxxxxx
ggaaacggcgattaggtttttttagggggaagaagaagatgactcctcgatgaaaattacaaatttacccctattcgttttaagtaaataaaaaactaat
6942600
--------->
ZAT14
<---------
ZAT14
----------->
HVH21
<---------
ZAT2
<---------
AHL20(2)
----------->
RAV1(2)
--------->
AHL20(2)
--------->
O2
--------->
ANAC46
<---------
TGA1a
--------->
ZAT14
<---------
<-----------------
AGL1
<---------
ZAT14
<---------
YAB1
--------->
LBD16
<---------
O2
--------->
ANAC46
--------->
AHL20(2)
--------->
SPL7
--------->
TGA1a
--------->
ZAT6
<---------
AHL20(1)
<---------
ICU4
<---------
LBD16
--------->
ZAT2
--------->
ARR14(2)
--------->
AHL20(1)
<---------
AHL20(2)
-------
ANAC58
------>
NtERF2
<---------
ARR14(2)
----------->
RAV1(1)
<---------
AHL20(2)
---
-------
ANAC58
<---------
ALFIN1
--------->
ARR11(3)
--------->
ANAC46
<---------
AHL20(2)
-----
xxxxxxxxxxxx
smallRNA(le3)
<-----------
HVH21
------>
ZmHOX2a(1)
<---------
AHL20(2)
--------->
AHL20(2)
tcgtgcggagttattcgaactggccacctgtgaagtcttaaaatcctctagtaccactacacaacaaataaaatttgtattaatttcgattaattacatt
6942700
---
---------
<xxxxxxxx
<---------
ARR14(2)
--------->
ANAC46
--------->
ANAC55(2)
<---------
ANAC55(2)
--------->
ANAC58
--------->
ANAC55(1)
<---------
TOE2(3)
<---------
YAB1
--------->
MYB52(1)
--------->
TOE1(3)
<-----------
GT1
-------->
P
--
--------->
TOE2(3)
<---------
YAB1
<---------
ICU4
--------->
ANAC58
<-----------
GT1
--------->
ARR11(3)
--------->
AHL20(2)
--------->
AHL20(2)
------->
TEIL
--
GT1
--------->
MYB52(1)
<---------
AHL20(2)
<---------
AHL20(2)
--------->
ARR14(2)
-------->
TBP
<---------
GLK1(2)
<---------
YAB1
<---------
YAB1
--------------->
AtSPL3
---->
AHL20(2)
----------->
ARR10
<---------
AHL20(2)
------->
TEIL
--------------->
AtSPL8
atataaccctaacgtttagattttgaaattagttttcaactaatttatgattttatttttgatatgtatatataattacgattcaaacacgtacccgctt
6942800
<------
MYB83
<---------
MYB46(3)
<---------
AtMYB61
<--------
P
<xxxxxxxxxxxxxxxxxxxxxxx
smallRNA(si3)
--------->
ALFIN1
--------->
ANAC46
xxxxxxxxxxxxxxxxxxxxxxx>
smallRNA(se3)
<--
------>
TOE2(3)
<-----------
GT1
--------->
YAB1
<---------
ANAC55(2)
>
ANAC46
<----------
DOF2
<---------
At4g35610
<------
MYB46(1)
--------->
ANAC55(2)
xxxxxxxxxxxxxx
smallRNA(le3)
xxxxxxxxxxxxxxxx>
smallRNA(s)
xxxxxxxxxxxxxxxxxxxxxxx>
smallRNA(si3)
<---
---->
ZmHOX2a(1)
<---------
DAG2
xxxxxxxxxxxxxxxxxxxxxx>
smallRNA(si3)
<-----------
RAV1(1)
------->
TEIL
cctaaattttttcaaaaactcgcttttacgcttccaaacgcttccgcttctatcagagagtgttggtttatttatgtggtttagttgattatgtatttcg
6942900
--------->
WOX13(1)
------------>
CBF
<---------
AHL20(1)
--------->
ARR11(3)
<---------
ARR11(3)
--------->
AHL20(1)
<---------
AHL20(1)
--------->
ARR11(3)
<
<---------
YAB1
----------->
TBP
<-------
TEIL
--------->
AHL20(1)
<------------
MYB.PH3(2)
-------
MYB52(1)
--------->
YAB1
<---------------
AtSPL8
--------->
YAB1
<xxxxxxxxxxxxxxxxxxxxxxx
smallRNA(i2)
----
GAMYB
--------->
ZAT14
<---------
AHL20(2)
<-----------
GT1
<---------
ARR11(3)
--------->
MYB46(3)
gttatgttaacaggttgtatagtcatagtatatatacttgtacaaatacattttacagagttaatgagaaaatattttcatcaatctctaacaaactctc
6943000
<XXXXXXXXXXXXXXXXXXXXX
MIR845B
--------->
GLK1(1)
--------->
YAB1
------>
ZmHOX2a(2)
----------->
GT1
--------->
ARR14(2)
<---------
ATHB12
<---------
ARR14(2)
------>
ZmHOX2a(2)
------------>
CBF
<---------
AGP1
<------
ZmHOX2a(2)
xxxxxxxxxxxxxxxxxxxxxxx>
smallRNA(s2)
--------->
HSFB2a(2)
--------->
ARR14(2)
---------
CCA1(2)
*
TSS
------->
GAMYB
<---------
HSFB2a(2)
<---------
At4g35610
<x
tcatctctctcaatcgtaat
atggtatcagagccatcaacgctcaaactccattgtttctcgatctgatttcttcattttcaagctcacgatcgtcttct
6943100
<---------
ANAC46
--------->
ANAC55(2)
<---------
ANAC55(2)
<---------
ANAC55(1)
<---------
bZIP60(2)
<---------
TGA1a
----------->
HVH21
----------->
GT1
--------->
YAB1
<---------
bZIP60(1)
xxxxxxxxxxxxxxxxxxxxxx>
smallRNA(fl3)
<---------
ATHB12
<---------
ANAC58
<<<<<<<<<<<<<<<<<
LFY
--------->
O2
xxx
--------->
CCA1(2)
<---------
O2
===
<------
ZmHOX2a(2)
--------->
bZIP60(1)
--------->
ANAC58
<---------
ARR14(2)
<---------
ANAC58
--------->
ANAC58
<---------
ARR11(3)
--------->
TGA1a
--------->
ZAT2
<--
--------->
ARR14(2)
----------->
STF1
--------->
At4g35610
<
--------->
AGP1
<-----------------------
TaNAC69(2)
<---------
At4g35610
--
xxxxxxxxxxxxxxxxxxxxx>
smallRNA(i2)
<---------
ZAT2
<---
--------->
ARR11(3)
----------->
HVH21
<------
ZmHOX2a(1)
----
xxxxxxxxxxxxxxxxxxxxxx
smallRNA(fl3)
----------->
TGA1
================================
ccattgctcaagctcaagatccaatggtgacagtagctcgagtgacgtgaaaatcaactcgatcgaagtcaggaacaagttcagctcgcaaacagtcgcg
6943200
<---------
GLK1(2)
<---------
YAB1
<---------
TOE2(3)
--------->
YAB1
--------->
ICU4
--------->
LBD16
xxxxxxxxxxxxxxxxxxxx>
smallRNA(se3)
--------->
DREB2C(2)
--------->
DEAR3(1)
--------->
ATERF1(2)
<---------
HSFB2a(2)
<---------
LBD16
--------->
HSFB2a(2)
--------->
MYB52(1)
--------->
CCA1(2)
xxxxxxxxxxxxxxxxxxxx>
smallRNA(si3)
<------
ZmHOX2a(2)
===========================
HOX2a_HOX2a
--------->
AGP1
<---------
ARR11(3)
----
ZmHOX2a(2)
--------->
ARR14(2)
---------
ALFIN1
====================
HOX2a_HOX2a
------->
MYB46(3)
------>
ZmHOX2a(1)
--------->
HSFC1(1)
------
ARR14(2)
------>
ZmHOX2a(1)
<---------
ARR11(3)
----
----->
ARR14(2)
================================
HOX2a_HOX2a
<---------
ANAC55(2)
====
HOX2a_HOX2a
--------->
At4g35610
<---------
ARR14(2)
--------->
HSFB2a(2)
--------->
ANAC55(2)
atccaccggcattgatgattctcctctgaattctcctcaagttgctagatccaagacttctagagcttcgcgagtcatcgtttcaccgaaatcaagtgat
6943300
<---------
MYB52(1)
<xxxxxxxxxxxxxxxxxxxxxxx
smallRNA(se3)
<---------
At5g28300
--------->
YAB1
<---------
ARR11(3)
--------->
MYB46(3)
--------->
LBD16
<---------
ATHB12
<------
ZmHOX2a(2)
--------->
At4g35610
---------
--------->
WOX13(1)
<---------
ATHB12
--------->
ARR11(3)
<---------
MYB52(2)
<--------
-->
ZmHOX2a(2)
<xxxxxxxxxxxxxxxxxxxxxxx
smallRNA(le3)
--------->
ICU4
<--------
ccaactcaatcaccgttcttcttgcacagtgccgatcatccaggtttgaatatcatctctcatcgtcttgatgaaacgaactatggagattggaatgttg
6943400
------>
ZmHOX2a(1)
--------->
TOE2(3)
<----------
DOF2
<---------
ANAC58
--------->
ARR14(2)
---------->
ID1
<----------
DOF2
<---------
ANAC58
<---------
ARR14(2)
--------->
bZIP60(2)
<---------
ARR11(3)
>
HSFB2a(1)
--------->
GLK1(2)
xxxxxxxxxxxxxxxxxxxxxx>
smallRNA(i2)
-------
-
HSFB2a(1)
--------->
MYB52(2)
------>
NtERF2
--------->
ARR11(3)
---
RAV1(1)
<---------
MYB52(1)
<---------
GLK1(1)
--------->
MYB52(1)
<------
caatgctcatttcgttagatgttaagaacaaatctggatttatagatggaactctgcctcgtcctttagaaacggataagaacttttgtctatggtctag
6943500
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AGI:
At2g15920.1
Description:
transposable element gene. copia-like retrotransposon family, has a 0. P-value blast match to GB:CAA72989 open reading frame 1 (Ty1_Copia-element) (Brassica oleracea)
Range:
from: 6943021
to: 6947487
Orientation: Forward
Links:
TAIR
MIPS
Please cite the corresponding
publications
when using AthaMap.
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