Search   Chromosome 1 Chromosome 2 Chromosome 3 Chromosome 4 Chromosome 5    Position Exon region Intron region UTR region AGI % Restriction to highly conserved TF binding sites (0-100)   Go to graphical and table display  1        10        20        30        40        50        60        70        80        90        100             <------MYB46(1)           <------MYB83          <---------TOE2(3)          --------->MYB59                                                                         <--      <---------MYB46(3)                                                                          <-- --------->DOF5.7(1)                                       --------->WOX13(2)          <---------AHL12(2) -------->MYB52(1)                                  <---------WOX13(2)                <---------AHL25(3) --------ARR14(2)                               --------->YAB1             <----------DOF2    <xxxxxx --------ARR11(2)                          <---------HSFB2a(2) <---------At5g28300    --------->AHL20(2) ------->ARR11(2)                          --------->HSFB2a(2) <-----------GT1   --------->AHL20(2) ------->ARR14(2)                    --------->YAB5<---------ICU4   --------->KAN1  <---------WOX13(2) ----ZmHOX2a(1)                   --------->At4g35610 <-----------GT1  <---------YAB5--------->AHL20(2) -ZmHOX2a(1)                 >>>>>>>>>TBF1 ------>ZmHOX2a(1)  <-----------GT1  ----------->GT1-------   ggaaacggcgattaggtttttttagggggaagaagaagatgactcctcgatgaaaattacaaatttacccctattcgttttaagtaaataaaaaactaat  6942600                                                                                   <---------YAB1                                                                               <---------WOX13(2)                                                                               --------->WOX13(2)                                                                              <---------AHL25(1)                                                                              <---------AHL25(3)                                                                              --------->AHL12(3)                                                                              <---------AHL20(2)                                                                   <---------AHL25(1)                                                                   <---------AHL20(2)                                                                   --------->AHL25(2)                                                                   <---------AHL25(2)                                                                   --------->AHL25(1)                                                                   <---------AHL12(3)                                                                   <---------AHL25(3)                                                                   --------->AHL12(3)                                                                  --------->AHL20(1)                                                                  <---------AHL20(1)                                                                  --------->AHL12(3)       <---------                                                                  <---------AHL12(3)     --------->WOX13(2)                            <---------ZAT14                       --------->AHL25(1)     <---------WOX13(2)                            --------->ZAT14                       --------->AHL20(2)    <---------ICU4                           ----------->HVH21                      <---------AHL25(3)   --------->AHL12(1)                       --------->ZAT2                             --------->AHL25(2)   <---------AHL20(2)                       ----------->RAV1(2)              --------->ANAC46      <---------AHL20(3)          <-----------------AGL1                       --------->ZAT14       --------->AHL25(1)       <---------YAB5  <---------ZAT2                  <---------ZAT14       --------->AHL20(2)   --------->LBD16     --------->O2                  --------->ANAC46        --------->AHL25(3)   --- --------->SPL7(1)     <---------TGA1a             --------->ZAT6 --------->AHL25(3)   --------->AHL25(1) <---------LBD16       <---------O2                --------->YAB5 <---------AHL25(1)   --------->AHL20(2) -------ANAC58         --------->TGA1a --------->ARR11(3)         <---------AHL25(2)   <---------AHL12(1) -------ANAC58       <---------ALFIN1  --------->ARR14(2)  ----------->RAV1(1)--------->AHL20(3)  <-- xxxxxxxxxxxxsmallRNA(le3)<-----------HVH21------>ZmHOX2a(1)      <---------AHL20(2)   --------->AHL25(3) -->KAN1--------->KAN1------>NtERF2    <---------ARR14(2) --------->ANAC46   <---------AHL20(2) -----   tcgtgcggagttattcgaactggccacctgtgaagtcttaaaatcctctagtaccactacacaacaaataaaatttgtattaatttcgattaattacatt  6942700                                                                                      --------->ANAC58                                                                                      <---------ANAC55(2)                                                                                      --------->ANAC58                                                                                      --------->ANAC55(1)                                                                         <-----------GT1                                                                       --------->WOX13(2)                                                                       <---------WOX13(2)                                                                      --------->YAB5  --------->ANAC55(2)                                                                      <---------ICU4 --------------->AtSPL3                                                    <---------YAB1   <---------AHL20(3)                                                 --------->AHL20(2)  <---------AHL12(3)                                                 --------->AHL25(1)  --------->AHL20(3)           ---                --------->ARR11(3)               <---------AHL20(3)  <---------AHL20(2)     ---------                --------->GATA12                 --------->AHL20(3)  --------->AHL12(3)  <---------ARR14(2)          --------->YAB5                         <---------AHL20(2)  <---------YAB1  --------------->AtSPL8        <---------TOE2(3)                        <---------AHL25(1)  --------->AHL20(2)  --------->ARR11(2)    --------->TOE1(3)                            --------->AHL25(2)  <---------AHL25(1)  ------->TEIL    --------->TOE2(3)                            --------->AHL25(3)  <---------AHL12(1)  --------->ARR14(2) <-----------GT1<---------GLK1(2)                <---------AHL25(2)  --------->AHL12(1)  <---------ARR11(2) --GT1 --------->MYB52(1)                   <---------YAB1           --------->AHL25(1)  --------->MYB52(1) -------->TBP   <---------RVE1(2)           <---------YAB5          --------->AHL25(3)--------->ANAC46 -------AHL12(2)<---------GATA12         <---------AHL20(2)     ------->TEIL--------->YAB5  <xxxxxxxx ---->AHL20(2)----------->ARR10    --------->WOX13(2)     <---------RVE1(2)<---------YAB1-------->P--   atataaccctaacgtttagattttgaaattagttttcaactaatttatgattttatttttgatatgtatatataattacgattcaaacacgtacccgctt  6942800    <---------AHL25(3)    <---------AHL25(1)    <---------AHL25(2)    --------->AHL12(3)    --------->AHL25(1)    --------->AHL25(2)    <---------AHL12(2)    <---------AHL12(1)    --------->AHL12(1)   <---------AHL25(2)                                        <------MYB46(1)   --------->AHL25(3)                                        <------MYB83   --------->AHL12(1)                                       <---------AtMYB61   --------->AHL12(3)    --------->ANAC46                  <xxxxxxxxxxxxxxxxxxxxxxxsmallRNA(si3)   <---------AHL12(3)  <-----------GT1                 xxxxxxxxxxxxxxxxxxxxxxx>smallRNA(se3)      <--   <---------AHL12(1)<---------DOF5.7(1)          --------->YAB1  --------->AHL12(2)    --------->ANAC55(2)  --------->AHL12(2)<---------DAG2    --------->ARR11(2)   <--------P                   <---------ANAC55(2) ------>TOE2(3)     <---------DOF5.7(1)   <---------At4g35610<---------MYB46(3)    --------->YAB5 <-- >ANAC46     --------->KAN1           <---------ARR11(2) --------->ALFIN1       --------->WOX13(2)--- xxxxxxxxxxxxxxsmallRNA(le3)xxxxxxxxxxxxxxxx>smallRNA(s) xxxxxxxxxxxxxxxxxxxxxxx>smallRNA(si3)   <--- ---->ZmHOX2a(1)    <----------DOF2xxxxxxxxxxxxxxxxxxxxxx>smallRNA(si3)<-----------RAV1(1) ------->TEIL   cctaaattttttcaaaaactcgcttttacgcttccaaacgcttccgcttctatcagagagtgttggtttatttatgtggtttagttgattatgtatttcg  6942900                                                                                  --------->YAB5                                                                                  --------->RVE1(2)                                                                             ------------>CBF                                                                      <---------AHL12(1)                                                                      <---------AHL12(2)                                                                      --------->AHL20(3)                                                                      <---------AHL20(3)                                                                      <---------AHL20(1)                                                                      <---------AHL25(2)                                                                      --------->AHL25(2)                                                                      <---------AHL25(3)                                                                      --------->ARR11(3)                                                                      --------->AHL12(1)                                                                      --------->AHL20(1)                                                                      <---------ARR11(3)                                                                     --------->AHL25(1)                                                                     <---------AHL25(3)                                                                     <---------AHL12(1)                                                                     --------->AHL12(1)                                                                     --------->AHL12(3)                                                                     <---------AHL12(3)                                                                     --------->AHL25(3)                                                                     <---------AHL25(1)                                                                    --------->ARR11(3)                                                                    --------->AHL12(1)                                                                    <---------AHL20(3)                                                                    --------->AHL20(3)                                                                    --------->AHL20(1)                                                                    --------->AHL25(2)                                                                    <---------AHL25(2)                                                                    --------->AHL12(2)                                                                    <---------AHL12(1) <---------YAB1                                                     --------->AHL25(3) -------ARR11(2)           ----------->TBP                          <---------AHL20(1)  <------------MYB.PH3(2) -------MYB52(1)    --------->YAB1          <-------TEIL      --------->YAB1<xxxxxxxxxxxxxxxxxxxxxxxsmallRNA(i2) ------>ARR11(2)   <---------YAB5 <---------------AtSPL8    <---------WOX13(2) --------->WOX13(1)   < ----GAMYB     --------->ZAT14 <---------AHL20(2) <-----------GT1   <---------ARR11(3)  --------->MYB46(3)   gttatgttaacaggttgtatagtcatagtatatatacttgtacaaatacattttacagagttaatgagaaaatattttcatcaatctctaacaaactctc  6943000                                                                 --------->GLK1(1)                                                             ------>ZmHOX2a(2)                                                           --------->GATA12                                                           --------->ARR11(2)                <XXXXXXXXXXXXXXXXXXXXXMIR845B              <---------ARR11(2)           ----------->GT1                                 --------->ARR14(2)           --------->YAB1                                  <---------AGP1                   <--------          <---------ATHB12                                 <---------ARR14(2)            ------>ZmHOX2a(2)      ------------>CBF                                     <---------GATA12             <------ZmHOX2a(2)  xxxxxxxxxxxxxxxxxxxxxxx>smallRNA(s2)                  <---------HSFB2a(2)            --------->ARR14(2) ---------CCA1(2)    *TSS            ------->GAMYB      --------->HSFB2a(2)     <---------At4g35610<x   tcatctctctcaatcgtaatatggtatcagagccatcaacgctcaaactccattgtttctcgatctgatttcttcattttcaagctcacgatcgtcttct  6943100                                          ----------->GT1                        ----------->HVH21 <---------bZIP60(2)                      --------->YAB1      <---------ANAC58                     xxxxxxxxxxxxxxxxxxxxxx>smallRNA(fl3)                     <---------ATHB12     <---------O2                <<<<<<<<<<<<<<<<<LFY      <---------bZIP60(1)                --------->CCA1(2)         <---------ANAC58                                        xxx                <------ZmHOX2a(2)         <---------ANAC46                                        <--               --------->AGP1             <---------ANAC55(2)                                     ===               xxxxxxxxxxxxxxxxxxxxx>smallRNA(i2)--------->RVE1(2)                               ----               --------->GATA12           --------->ANAC55(2)                                    <---               --------->RVE1(2)          <---------ANAC55(1)                                    ----               <---------ARR11(2)         <---------TGA1a                          --------->ANAC58               <---------ARR11(3)         --------->O2                             --------->ANAC58               --------->ARR11(3)         --------->TGA1a                       --------->ZAT2   <---               <---------GATA12           --------->bZIP60(1)        ================================               --------->ARR11(2)        ----------->STF1            <------ZmHOX2a(1)           ----               --------->ARR14(2)        <-----------------------TaNAC69(2)     --------->At4g35610 < -DOF5.7(1)    <---------ARR14(2)      ----------->TGA1   --------->GATA12      <---------At4g35610-- xxxxxxxxxxxxxxxxxxxxxxsmallRNA(fl3)   ----------->HVH21  <---------GATA12      <---------ZAT2   <---   ccattgctcaagctcaagatccaatggtgacagtagctcgagtgacgtgaaaatcaactcgatcgaagtcaggaacaagttcagctcgcaaacagtcgcg  6943200            <---------YAB5            <---------YAB1           <---------TOE2(3)          --------->YAB1         --------->ICU4    --------->LBD16   --------->DEAR3(1)   --------->ATERF1(2)   xxxxxxxxxxxxxxxxxxxx>smallRNA(se3)                    <---------HSFB2a(2)   --------->DREB2C(2)                                   --------->HSFB2a(2)  <---------LBD16                             <------ZmHOX2a(2) --------->MYB52(1)                           --------->CCA1(2) xxxxxxxxxxxxxxxxxxxx>smallRNA(si3)          --------->AGP1 <---------ARR11(3) ----ZmHOX2a(2)                              <---------ARR11(3) ===========================HOX2a_HOX2a      --------->GATA12 ----->GATA12 <---------GLK1(2)              --------->RVE1(2) ------GATA12--------->YAB5                  <---------ARR11(2) ----->ARR14(2)                              --------->ARR11(2) ------ARR11(2)                              <---------ARR14(2) ====HOX2a_HOX2a                 ------>ZmHOX2a(1)       --------->HSFC1(1) ----->ARR11(2)                  ====================HOX2a_HOX2a ---------ALFIN1     --------->At4g35610     <---------GATA12             <---------YAB5         ---- ------->MYB46(3)    ================================HOX2a_HOX2a       <---------YAB5      --------->ANAC55(2) ------ARR14(2)      ------>ZmHOX2a(1)       --------->ARR14(2)   --------->HSFB2a(2)      <---------ANAC55(2)   atccaccggcattgatgattctcctctgaattctcctcaagttgctagatccaagacttctagagcttcgcgagtcatcgtttcaccgaaatcaagtgat  6943300            <---------MYB52(1)          <xxxxxxxxxxxxxxxxxxxxxxxsmallRNA(se3)        <---------At5g28300                     --------->ARR11(3)                          <--------       --------->YAB1                           <---------ARR11(3)                          <--------      --------->MYB46(3)              --------->LBD16      <---------YAB5                   <--------      <---------ATHB12          <---------ATHB12--------->RVE1(2)                    <---------GATA12    --------->WOX13(1)          <------ZmHOX2a(2)   --------->At4g35610  <---------MYB52(2) --------- -->ZmHOX2a(2)          <xxxxxxxxxxxxxxxxxxxxxxxsmallRNA(le3)    --------->ICU4    <---------RVE1(2)   ccaactcaatcaccgttcttcttgcacagtgccgatcatccaggtttgaatatcatctctcatcgtcttgatgaaacgaactatggagattggaatgttg  6943400                            <---------GATA12                             <---------KAN1                            <---------ARR14(2)               ------>ZmHOX2a(1)                            --------->GATA12                 <----------DOF2 <---------ARR11(3)          --------->TOE2(3) --------->GLK1(2)               <---------DOF5.7(1) <----------DOF2         <---------ANAC58   --------->ARR14(2)            ---------->ID1<---------ARR11(2) ---RAV1(1)    <---------RVE1(2)                        xxxxxxxxxxxxxxxxxxxxxx>smallRNA(i2)      ---- -HSFB2a(1)  --------->MYB52(2)                         --------->bZIP60(2)  --------->ARR11(3)  <--- -KAN1   <---------ANAC58<---------KAN1        <---------GLK1(1)        --------->ARR11(2)    ------- >HSFB2a(1)<---------MYB52(1)     --------->GATA12  ------>NtERF2  --------->MYB52(1)         <------   caatgctcatttcgttagatgttaagaacaaatctggatttatagatggaactctgcctcgtcctttagaaacggataagaacttttgtctatggtctag  6943500  Previous    Next  AGI:  At2g15920.1    Description:  transposable element gene. copia-like retrotransposon family, has a 0. P-value blast match to GB:CAA72989 open reading frame 1 (Ty1_Copia-element) (Brassica oleracea) Range:  from: 6943021    to: 6947487    Orientation: Forward Links:  TAIR  MIPS  AIP      Please cite the corresponding publications when using AthaMap.