Search   Chromosome 1 Chromosome 2 Chromosome 3 Chromosome 4 Chromosome 5    Position Exon region Intron region UTR region AGI % Restriction to highly conserved TF binding sites (0-100)   Go to graphical and table display  1        10        20        30        40        50        60        70        80        90        100             <------MYB83           <------MYB46(1)          <---------TOE2(3)          --------->MYB59      <---------MYB46(3)                           <---------ICU4                                 <-- -------->MYB52(1)                              --------->YAB1                        --------->AHL20(2) --------ARR14(2)                          ------>ZmHOX2a(1)   <-----------GT1   --------->AHL20(2) ------->ARR14(2)                          --------->HSFB2a(2) <---------At5g28300   --------->AHL20(2) ----ZmHOX2a(1)                   --------->At4g35610 <-----------GT1      <----------DOF2        <-- -ZmHOX2a(1)                 >>>>>>>>>TBF1 <---------HSFB2a(2)<-----------GT1  ----------->GT1<xxxxxx   ggaaacggcgattaggtttttttagggggaagaagaagatgactcctcgatgaaaattacaaatttacccctattcgttttaagtaaataaaaaactaat  6942600                            --------->ZAT14                            <---------ZAT14                           ----------->HVH21                       <---------ZAT2                              <---------AHL20(2)                       ----------->RAV1(2)                        --------->AHL20(2)                       --------->O2                     --------->ANAC46                       <---------TGA1a                 --------->ZAT14                     <---------          <-----------------AGL1                       <---------ZAT14             <---------YAB1   --------->LBD16     <---------O2                  --------->ANAC46        --------->AHL20(2) --------->SPL7        --------->TGA1a             --------->ZAT6 <---------AHL20(1)    <---------ICU4 <---------LBD16       --------->ZAT2  --------->ARR14(2)         --------->AHL20(1)   <---------AHL20(2) -------ANAC58        ------>NtERF2    <---------ARR14(2)  ----------->RAV1(1)<---------AHL20(2)  --- -------ANAC58       <---------ALFIN1  --------->ARR11(3) --------->ANAC46   <---------AHL20(2) ----- xxxxxxxxxxxxsmallRNA(le3)<-----------HVH21------>ZmHOX2a(1)      <---------AHL20(2)   --------->AHL20(2)   tcgtgcggagttattcgaactggccacctgtgaagtcttaaaatcctctagtaccactacacaacaaataaaatttgtattaatttcgattaattacatt  6942700                                                                                                  ---                                                                                            ---------                                                                                            <xxxxxxxx                                                                                         <---------ARR14(2)                                                                                      --------->ANAC46                                                                                      --------->ANAC55(2)                                                                                      <---------ANAC55(2)                                                                                      --------->ANAC58                                                                                      --------->ANAC55(1)        <---------TOE2(3)                                                  <---------YAB1--------->MYB52(1)    --------->TOE1(3)                                                    <-----------GT1 -------->P--    --------->TOE2(3)                               <---------YAB1    <---------ICU4  --------->ANAC58 <-----------GT1--------->ARR11(3)               --------->AHL20(2)  --------->AHL20(2)  ------->TEIL --GT1 --------->MYB52(1)                        <---------AHL20(2)  <---------AHL20(2)  --------->ARR14(2) -------->TBP   <---------GLK1(2)           <---------YAB1           <---------YAB1  --------------->AtSPL3 ---->AHL20(2)----------->ARR10          <---------AHL20(2)     ------->TEIL         --------------->AtSPL8   atataaccctaacgtttagattttgaaattagttttcaactaatttatgattttatttttgatatgtatatataattacgattcaaacacgtacccgctt  6942800                                                             <------MYB83                                                             <---------MYB46(3)                                                            <---------AtMYB61                                                           <--------P                                                           <xxxxxxxxxxxxxxxxxxxxxxxsmallRNA(si3)                                                         --------->ALFIN1                         --------->ANAC46              xxxxxxxxxxxxxxxxxxxxxxx>smallRNA(se3)      <-- ------>TOE2(3)        <-----------GT1            --------->YAB1                        <---------ANAC55(2) >ANAC46            <----------DOF2       <---------At4g35610<------MYB46(1)            --------->ANAC55(2) xxxxxxxxxxxxxxsmallRNA(le3)xxxxxxxxxxxxxxxx>smallRNA(s) xxxxxxxxxxxxxxxxxxxxxxx>smallRNA(si3)   <--- ---->ZmHOX2a(1)    <---------DAG2 xxxxxxxxxxxxxxxxxxxxxx>smallRNA(si3)<-----------RAV1(1) ------->TEIL   cctaaattttttcaaaaactcgcttttacgcttccaaacgcttccgcttctatcagagagtgttggtttatttatgtggtttagttgattatgtatttcg  6942900                                                                               --------->WOX13(1)                                                                             ------------>CBF                                                                      <---------AHL20(1)                                                                      --------->ARR11(3)                                                                      <---------ARR11(3)                                                                      --------->AHL20(1)                                                                    <---------AHL20(1)                                                                    --------->ARR11(3)              < <---------YAB1            ----------->TBP  <-------TEIL            --------->AHL20(1)  <------------MYB.PH3(2) -------MYB52(1)    --------->YAB1<---------------AtSPL8      --------->YAB1<xxxxxxxxxxxxxxxxxxxxxxxsmallRNA(i2) ----GAMYB     --------->ZAT14 <---------AHL20(2) <-----------GT1   <---------ARR11(3)  --------->MYB46(3)   gttatgttaacaggttgtatagtcatagtatatatacttgtacaaatacattttacagagttaatgagaaaatattttcatcaatctctaacaaactctc  6943000                <XXXXXXXXXXXXXXXXXXXXXMIR845B                    --------->GLK1(1)           --------->YAB1                                    ------>ZmHOX2a(2)           ----------->GT1                                 --------->ARR14(2)          <---------ATHB12                                 <---------ARR14(2)            ------>ZmHOX2a(2)      ------------>CBF                                     <---------AGP1               <------ZmHOX2a(2)  xxxxxxxxxxxxxxxxxxxxxxx>smallRNA(s2)                  --------->HSFB2a(2)            --------->ARR14(2) ---------CCA1(2)    *TSS            ------->GAMYB      <---------HSFB2a(2)     <---------At4g35610<x   tcatctctctcaatcgtaatatggtatcagagccatcaacgctcaaactccattgtttctcgatctgatttcttcattttcaagctcacgatcgtcttct  6943100                                          <---------ANAC46                                          --------->ANAC55(2)                                          <---------ANAC55(2)                                          <---------ANAC55(1)                                          <---------bZIP60(2)                                          <---------TGA1a                        ----------->HVH21 ----------->GT1                      --------->YAB1      <---------bZIP60(1)                     xxxxxxxxxxxxxxxxxxxxxx>smallRNA(fl3)                     <---------ATHB12     <---------ANAC58                <<<<<<<<<<<<<<<<<LFY      --------->O2                                            xxx                --------->CCA1(2)         <---------O2                                            ===                <------ZmHOX2a(2)         --------->bZIP60(1)                      --------->ANAC58               <---------ARR14(2)         <---------ANAC58                         --------->ANAC58               <---------ARR11(3)         --------->TGA1a                       --------->ZAT2    <--               --------->ARR14(2)        ----------->STF1                       --------->At4g35610 <               --------->AGP1            <-----------------------TaNAC69(2)     <---------At4g35610--               xxxxxxxxxxxxxxxxxxxxx>smallRNA(i2)                               <---------ZAT2   <---               --------->ARR11(3)      ----------->HVH21             <------ZmHOX2a(1)           ---- xxxxxxxxxxxxxxxxxxxxxxsmallRNA(fl3)   ----------->TGA1              ================================   ccattgctcaagctcaagatccaatggtgacagtagctcgagtgacgtgaaaatcaactcgatcgaagtcaggaacaagttcagctcgcaaacagtcgcg  6943200              <---------GLK1(2)            <---------YAB1           <---------TOE2(3)          --------->YAB1         --------->ICU4    --------->LBD16   xxxxxxxxxxxxxxxxxxxx>smallRNA(se3)   --------->DREB2C(2)   --------->DEAR3(1)   --------->ATERF1(2)                                   <---------HSFB2a(2)  <---------LBD16                                        --------->HSFB2a(2) --------->MYB52(1)                           --------->CCA1(2) xxxxxxxxxxxxxxxxxxxx>smallRNA(si3)           <------ZmHOX2a(2) ===========================HOX2a_HOX2a      --------->AGP1 <---------ARR11(3) ----ZmHOX2a(2)                              --------->ARR14(2) ---------ALFIN1                 ====================HOX2a_HOX2a ------->MYB46(3)                ------>ZmHOX2a(1)       --------->HSFC1(1) ------ARR14(2)      ------>ZmHOX2a(1)       <---------ARR11(3)                                  ---- ----->ARR14(2)      ================================HOX2a_HOX2a                           <---------ANAC55(2) ====HOX2a_HOX2a     --------->At4g35610     <---------ARR14(2)   --------->HSFB2a(2)      --------->ANAC55(2)   atccaccggcattgatgattctcctctgaattctcctcaagttgctagatccaagacttctagagcttcgcgagtcatcgtttcaccgaaatcaagtgat  6943300            <---------MYB52(1)          <xxxxxxxxxxxxxxxxxxxxxxxsmallRNA(se3)        <---------At5g28300       --------->YAB1                           <---------ARR11(3)      --------->MYB46(3)              --------->LBD16      <---------ATHB12          <------ZmHOX2a(2)   --------->At4g35610                     ---------    --------->WOX13(1)          <---------ATHB12--------->ARR11(3)       <---------MYB52(2) <-------- -->ZmHOX2a(2)          <xxxxxxxxxxxxxxxxxxxxxxxsmallRNA(le3)    --------->ICU4             <--------   ccaactcaatcaccgttcttcttgcacagtgccgatcatccaggtttgaatatcatctctcatcgtcttgatgaaacgaactatggagattggaatgttg  6943400                                                             ------>ZmHOX2a(1)          --------->TOE2(3)                                  <----------DOF2         <---------ANAC58   --------->ARR14(2)            ---------->ID1        <----------DOF2         <---------ANAC58   <---------ARR14(2)          --------->bZIP60(2)  <---------ARR11(3) >HSFB2a(1)                 --------->GLK1(2)           xxxxxxxxxxxxxxxxxxxxxx>smallRNA(i2)   ------- -HSFB2a(1)  --------->MYB52(2)                     ------>NtERF2            --------->ARR11(3) ---RAV1(1)<---------MYB52(1)                  <---------GLK1(1)   --------->MYB52(1)         <------   caatgctcatttcgttagatgttaagaacaaatctggatttatagatggaactctgcctcgtcctttagaaacggataagaacttttgtctatggtctag  6943500  Previous    Next  AGI:  At2g15920.1    Description:  transposable element gene. copia-like retrotransposon family, has a 0. P-value blast match to GB:CAA72989 open reading frame 1 (Ty1_Copia-element) (Brassica oleracea) Range:  from: 6943021    to: 6947487    Orientation: Forward Links:  TAIR  MIPS      Please cite the corresponding publications when using AthaMap.