Home Tools   - Search   - Colocalization   - Gene Analysis   - Gene Identification   - Small RNA Targets   - MicroRNA Targets Description Documentation Citations Downloads Publications History Contact Links Disclaimer	Search   Chromosome 1 Chromosome 2 Chromosome 3 Chromosome 4 Chromosome 5    Position Exon region Intron region UTR region AGI % Restriction to highly conserved TF binding sites (0-100)   Go to graphical and table display  1        10        20        30        40        50        60        70        80        90        100          --------->ANAC58      ---------->DOF2  --------->ANAC58  --------->ANAC58 --------->DOF2                                                                   <------NtERF2 -----ZmHOX2a(1)                                                                 ------>NtERF2 ---->At4g35610                                                                 <---------RAP2.6(2) --ZAT2 --------->ANAC46                                                       ---------->ID1 ->At4g35610       <----------CDC5                 ------>ZmHOX2a(2)     --------->ARR11(3)     ----- ->ZAT2 --------->ANAC58                          <------ZmHOX2a(2)    --------->MYB59         <----- --At4g35610      <---------At4g35610    <------NtERF2  <------NtERF2 <-----------RAV1(2)  --------->MYB46(3) --RAV1(2)   <---------MYB52(2)    xxxxxxxxxxxxxxxx>smallRNA(s)     <-----------HVH21    <-----------GT1   aggaaagcaaaagccacttacgctgagcctccagttccaaggctgcattgagatcggaggcattggcaagagtcaggtcttggcgccttaaaaaccactc  6855000                 --------->ZAT2 <--------ATHB1                 <---------ZAT2 --------->ATHB51                 <---------At4g35610    --------->ZAT18                 --------->At4g35610xxxxxxxxxxxxxxxxxxxxxx>smallRNA(si3)           <---------HSFB2a(2)                ------->TEIL    <---------ICU4                                     --------->HSFB2a(2)      <----------DOF2           --------->ATHB12                               <---------DAG2 ------->TEIL--------->ANAC58  <---------YAB1                                  <----------DOF2 ---->YAB1   --------->ANAC58  --------->ICU4      <----------DOF2           <---------At4g35610   <- ----ATHB12  --------->ANAC46--------->YAB1  --------->ZAT14            <----------DOF2          ----   atgagcctcttttgtacgcagctctataccagaataattgagcctactgaagtctttaataggcttcttgagggctttcagctttttagaaaccctgaac  6855100                  <-------GAMYB                  --------->At4g35610                 --------->MYB46(2)                 --------->MYB52(2)                 --------->MYB55(2)               <---------MYB52(1)             --------->O2             --------->bZIP60(2)             --------->ANAC58             --------->ANAC46             --------->ANAC58           ------->GAMYB           <---------ALFIN1          --------->MYB46(3)         ------>MYB46(1)         ------>MYB83         -------->P        ------>MYB46(1)        ------>MYB83                                                 ------->GAMYB      --------->MYB46(3)                                          ----------->RAV1(1)      <---------MYB59                                        <---------ICU4     --------->ANAC58                                       --------->ICU4     --------->ANAC58                 --------->YAB1        <---------YAB1       --------->ARR11(3) - ----------HVH21 <---------MYB46(3)--------->HSFB2a(2)    <---------ICU4   <---------YAB1 ----------- ----->TOE1(2)--------->TOE2(3)    <---------HSFB2a(2)   ------>ZmHOX2a(1)<xxxxxxxxxxxxxxxxxsmallRNA(si3)   atgtgagacccaaccacgttagttgaataccaattttctataacaacattcaaaaactcctcattattcaacagaaaattatagaacttgaagggacgct  6855200                                                                                             --------                                                                                           --------->LBD16                                                                                      <------NtERF2                                                                                      --------->ATERF1(1)                                                                                     <---------ATERF1(1)                                                                                     ------>NtERF2                                                                                    ----------->HVH21                                                                                   <------NtERF2                                             ------>ZmHOX2a(2)                     --------->ATERF1(1)                                  --------->ANAC58                                 --------->RAP2.3(1)                                  --------->ANAC46                       ---------->DOF2 <---------LBD16                            ------->GAMYB   --------->At4g35610        --------->ANAC58 ------>NtERF2                           --------->ANAC46--------->ARR11(3)          --------->ANAC58<---------ALFIN1                      --------->ANAC46     <---------ARR11(3)   ---------->DOF2   <---------ATERF1(1) -------->ZAT6      ----------->RAV1(1)--------->ANAC55(2)  <-----------GT1      <---------DEAR3(1) >HVH21       --------->At4g35610 --------->ANAC58   <---------------------WRI1 --------->ATERF1(1)<-   taacactaataccatcagcctccaacacaaccccacaagacacatgatctgagaagtccaaattaccaaagacaccaaagacggaggcgacaccggaaga  6855300                                                                               --------->ANAC46                                                                           <---------MYB55(2)                                                                          --------->ANAC58                                                                          --------->ANAC58                                                                          --------->ANAC46                                              <---------ZAT2              ------>MYB83                                              --------->At4g35610         ------>MYB46(1)                                              --------->ZAT2            <---------ALFIN1                                              <---------ZAT14           --------->AtMYB61                                   <-------PIF5                 <---------ANAC58                 <---                                   ------->MYC2                 <---------ANAC58               ------                                   ------->PIF5               <---------ARR11(3)      --------->HSFC1(2)    --------->LBD16                <-------MYC3               --------->ARR11(3)      <---------HSFC1(2)   <---------HSFB2a(2)             ------->MYC3              xxxxxxxxxxxxxxxxxxxxx>smallRNA(se3) ====   --------->HSFB2a(2)             <-------MYC2    <---------ZAT18   <-----------GT1  <---------HSFB2a(1) ->SPL7  ----------->RAV1(1)      xxxxxxxxxxxxxxxxxxxxxx>smallRNA(se3) --------->MYB46(3)  <--------- --------ALFIN1          <------ZmHOX2a(1)    <---------At4g35610   ----------->HVH21 --------->HSFB2a(1)   cccatcccgaacaccagaagagacagaggatgcagcacgagcacagactgctgcgaacttagaagagcttgtgaccaccccacgaagaagcttctttttc  6855400                                               <---------TGA1a                                               --------->TGA1a                                      --------->ALFIN1                                      xxxxxxxxxxxxxxxxxxxxxxx>smallRNA(si3)                                     <-----------HVH21                                    =====================bZIP_bZIP                                    --------->TGA1a                                    ================================bZIP_DOF                                    <---------TGA1a                                    <---------O2 --------->ALFIN1                                    --------->O2 <---------MYB52(1)                                    ================================bZIP_DOF                                    <---------ANAC46                                 ========================MYC_MYB                                 =============MYC_MYB                                 --------->At1g77200                                 --------->DREB2C(2)                                 ------->GAMYB --------->O2                                 --------->DEAR4(1)                                 ----------->HVH21                                 --------->DEAR3(1)  <xxxxxxxxxxxxxxxxsmallRNA(s)                                --------->DEAR3(2)  ----------->GT1                                --------->MYB46(3)  <---------ANAC46                              <---------ALFIN1<------NtERF2                              --------->AtMYB61<---------O2                             <---------MYB55(2)=====================bZIP_DOF                             --------->MYB46(3)=====================bZIP_DOF                          <---------ETT(1)   ------>NtERF2   <----------DOF2   --------->HSFC1(2)     --------->DEAR3(1)                                -------   ===========================================bZIP_DOF                                        <------ -------DOF2         <---------HSFC1(2)    --------->ATERF1(1)                                <------ ---->ID1            <---------HSFB2a(1)   --------->DEAR3(2)                         <-----------TBP =============================================bZIP_DOF                            ----------->GT1 <-- -DOF2        *TSS   --------->HSFB2a(1)  ------>NtERF2  ---------->DOF2   ---------->DOF2---------->DOF2   tttttctttggcattagaacagaaatttccgaccaccgacgtgaggccgacgttggggaaaaagaagcgaaacgaagaaaagaaaggtttttaaaagata  6855500                                                                               <---------ARR11(3)                                                                               --------->ARR11(3)                                                                              --------->GLK1(1)                                                                              --------->RVE1(1)                                                                              <---------RVE1(1)                                                                              <---------CCA1(1)                                       --------->MYB52(1)                     --------->CCA1(1)                                       ------>MYB83 <xxxxxxxxxxxxxxxxxxxxxxxsmallRNA(le3)                                       ------>MYB46(1)                        <---------GLK1(1)                                       xxxxxxxxxxxxxxxxxxxxxxx>smallRNA(se3) <---------ARR11(3)                                     <---------MYB46(2)                      --------->ARR11(3)                      <-----------RAV1(1)          <xxxxxxxxxxxxxxxxxxxxxxxsmallRNA(le3)                     <---------TOE2(3)--------->MYB55(1)                   <---------TOE2(3) -->ARR11(3)       <---------AHL20(2)<---------MYB55(2)                <----------DOF2 ---GLK1(2)       <---------AHL20(2) --------->MYB46(3)             ------>MYB83              ------- ---ARR11(3)<------ZmHOX2a(2)   <-----------HVH21--------->TOE2(3)  ------>MYB46(1)       -------->P --------DOF2     --------->AHL20(2) --------->AtMYB61            <---------MYB59        <-----------GT1   ctttgaatatagagatcgaatttaatgttgtttctgtcaccaaacgctcagcctaaatcgaagctctacctatctttaagatatctattatctaccatgc  6855600                                      --------->ARR11(3)                                     --------->YAB1                                  <---------ICU4                                  --------->YAB1                                 --------->AHL20(2)                         <---------ANAC58            --------->AHL20(2)                         <----                         <---------ANAC58    <-----------GT1                                 --------                        ---------->ID1<-----------GT1<---------AHL20(2)                   <---------STY1(2)         <------ZmHOX2a(1)   --------->AHL20(2)--------->ANAC55(2)                        --------->STY1(2)      --------->HSFB2a(2)<---------ANAC46<----------DOF2                                 ------>MYB46(1)  --------->MYB46(3)   <-----------GT1<---------ARR11(3)                                 ------>MYB83 -->AtLEC2       <----------DOF2 <---------AHL20(2) --------->AHL20(2)           --------->TOE2(3)   atcaactactaggactactctttttttgcgttttattaattatctttttacttatttaattttctataatgtaatcttgtttttcttaacctagctagta  6855700                                                            <---------AHL20(2)                                                         --------->AHL20(1)                                                         <---------AHL20(1)                                                         --------->AHL20(2)             <---------ANAC46                            <---------AHL20(2)             ----------->GT1              --------->ATHB12  --------->AHL20(2)            <---------AtMYB61    --------->CCA1(2)       <---------ARR11(3)            --------->ALFIN1    <---------AHL20(1)       --------->ARR11(3) --------->AHL20(2)             --------->AHL20(1)    --------->AHL20(2) <---------AHL20(1)          --------->AHL20(2)     --------->AHL20(1)                          ----- <---------AHL20(2)         <---------AHL20(2)      --------->AHL20(2)                         ------ -----AHL20(1)              --------->AHL20(2)     --------->YAB1                             ------- --->GT1  <---------ANAC46 --------->AHL20(2)    --------->AHL20(2)    ------->GAMYB<---------YAB1---   tattttattttggtgtggtgaacatccaaattaatatataagaatgtttgaaaaaataatatattaatatcaacgctcattgtgttcttataacaaaaaa  6855800                             <---------TOE2(3)                    <---------ANAC58                                                        <--------                    <---------ANAC46                                                       <---------ATHB51       --------->DAG2        <---------YAB1                                                <---------ATHB12      ---------->DOF2       <-----------GT1     ----------->GT1                            --------->ICU4   --------->AHL20(2) <---------MYB52(1) --------------->AGL15                    <---------MYB52(1)  --------->AHL20(2)<---------ANAC58     <---------------AGL15               --------->ARR11(3)    -- ------>GT1      <----------DOF2    <---------DAG2                       ---------->DOF2   <---------AHL20(2) --->DAG2       <---------ANAC58    <----------DOF2                    <---------YAB1      --------->AHL20(2) --->DOF2  --------->MYB111(1)     <---------ANAC58        <-----------RAV1(1)   <-------GAMYB <----- ------>AHL20(2)<---------ANAC58   <---------ANAC58     <---------AHL20(2)   <---------ARR11(3)------   gtaaataaaaaagtagttgctttcgtttattaacattgcttttctatatagagtttatattatgttgcataatatgaaaggtctgttatccaaataatta  6855900  Previous    Next  AGI:  At2g15720.1    Description:  transposable element gene. non-LTR retrotransposon family (LINE), has a 5.4e-35 P-value blast match to GB:AAB41224 ORF2 (LINE-element) (Rattus norvegicus) Range:  from: 6852467    to: 6855414    Orientation: Reverse Links:  TAIR  MIPS      Please cite the corresponding publications when using AthaMap.
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