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Chromosome 1
Chromosome 2
Chromosome 3
Chromosome 4
Chromosome 5
Position
Exon region
Intron region
UTR region
AGI
% Restriction to highly conserved TF binding sites (0-100)
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1 10 20 30 40 50 60 70 80 90 100
--------->
ANAC58
---------->
DOF2
--------->
ANAC58
--------->
ANAC58
--------->
DOF2
<------
NtERF2
-----
ZmHOX2a(1)
------>
NtERF2
---->
At4g35610
<---------
RAP2.6(2)
--
ZAT2
--------->
ANAC46
---------->
ID1
->
At4g35610
<----------
CDC5
------>
ZmHOX2a(2)
--------->
ARR11(3)
-----
->
ZAT2
--------->
ANAC58
<------
ZmHOX2a(2)
--------->
MYB59
<-----
--
At4g35610
<---------
At4g35610
<------
NtERF2
<------
NtERF2
<-----------
RAV1(2)
--------->
MYB46(3)
--
RAV1(2)
<---------
MYB52(2)
xxxxxxxxxxxxxxxx>
smallRNA(s)
<-----------
HVH21
<-----------
GT1
aggaaagcaaaagccacttacgctgagcctccagttccaaggctgcattgagatcggaggcattggcaagagtcaggtcttggcgccttaaaaaccactc
6855000
--------->
ZAT2
<--------
ATHB1
<---------
ZAT2
--------->
ATHB51
<---------
At4g35610
--------->
ZAT18
--------->
At4g35610
xxxxxxxxxxxxxxxxxxxxxx>
smallRNA(si3)
<---------
HSFB2a(2)
------->
TEIL
<---------
ICU4
--------->
HSFB2a(2)
<----------
DOF2
--------->
ATHB12
<---------
DAG2
------->
TEIL
--------->
ANAC58
<---------
YAB1
<----------
DOF2
---->
YAB1
--------->
ANAC58
--------->
ICU4
<----------
DOF2
<---------
At4g35610
<-
----
ATHB12
--------->
ANAC46
--------->
YAB1
--------->
ZAT14
<----------
DOF2
----
atgagcctcttttgtacgcagctctataccagaataattgagcctactgaagtctttaataggcttcttgagggctttcagctttttagaaaccctgaac
6855100
<-------
GAMYB
--------->
At4g35610
--------->
MYB46(2)
--------->
MYB52(2)
--------->
MYB55(2)
<---------
MYB52(1)
--------->
O2
--------->
bZIP60(2)
--------->
ANAC58
--------->
ANAC46
--------->
ANAC58
------->
GAMYB
<---------
ALFIN1
--------->
MYB46(3)
------>
MYB46(1)
------>
MYB83
-------->
P
------>
MYB46(1)
------>
MYB83
------->
GAMYB
--------->
MYB46(3)
----------->
RAV1(1)
<---------
MYB59
<---------
ICU4
--------->
ANAC58
--------->
ICU4
--------->
ANAC58
--------->
YAB1
<---------
YAB1
--------->
ARR11(3)
-
----------
HVH21
<---------
MYB46(3)
--------->
HSFB2a(2)
<---------
ICU4
<---------
YAB1
-----------
----->
TOE1(2)
--------->
TOE2(3)
<---------
HSFB2a(2)
------>
ZmHOX2a(1)
<xxxxxxxxxxxxxxxxx
smallRNA(si3)
atgtgagacccaaccacgttagttgaataccaattttctataacaacattcaaaaactcctcattattcaacagaaaattatagaacttgaagggacgct
6855200
--------
--------->
LBD16
<------
NtERF2
--------->
ATERF1(1)
<---------
ATERF1(1)
------>
NtERF2
----------->
HVH21
<------
NtERF2
------>
ZmHOX2a(2)
--------->
ATERF1(1)
--------->
ANAC58
--------->
RAP2.3(1)
--------->
ANAC46
---------->
DOF2
<---------
LBD16
------->
GAMYB
--------->
At4g35610
--------->
ANAC58
------>
NtERF2
--------->
ANAC46
--------->
ARR11(3)
--------->
ANAC58
<---------
ALFIN1
--------->
ANAC46
<---------
ARR11(3)
---------->
DOF2
<---------
ATERF1(1)
-------->
ZAT6
----------->
RAV1(1)
--------->
ANAC55(2)
<-----------
GT1
<---------
DEAR3(1)
>
HVH21
--------->
At4g35610
--------->
ANAC58
<---------------------
WRI1
--------->
ATERF1(1)
<-
taacactaataccatcagcctccaacacaaccccacaagacacatgatctgagaagtccaaattaccaaagacaccaaagacggaggcgacaccggaaga
6855300
--------->
ANAC46
<---------
MYB55(2)
--------->
ANAC58
--------->
ANAC58
--------->
ANAC46
<---------
ZAT2
------>
MYB83
--------->
At4g35610
------>
MYB46(1)
--------->
ZAT2
<---------
ALFIN1
<---------
ZAT14
--------->
AtMYB61
<-------
PIF5
<---------
ANAC58
<---
------->
MYC2
<---------
ANAC58
------
------->
PIF5
<---------
ARR11(3)
--------->
HSFC1(2)
--------->
LBD16
<-------
MYC3
--------->
ARR11(3)
<---------
HSFC1(2)
<---------
HSFB2a(2)
------->
MYC3
xxxxxxxxxxxxxxxxxxxxx>
smallRNA(se3)
====
--------->
HSFB2a(2)
<-------
MYC2
<---------
ZAT18
<-----------
GT1
<---------
HSFB2a(1)
->
SPL7
----------->
RAV1(1)
xxxxxxxxxxxxxxxxxxxxxx>
smallRNA(se3)
--------->
MYB46(3)
<---------
--------
ALFIN1
<------
ZmHOX2a(1)
<---------
At4g35610
----------->
HVH21
--------->
HSFB2a(1)
cccatcccgaacaccagaagagacagaggatgcagcacgagcacagactgctgcgaacttagaagagcttgtgaccaccccacgaagaagcttctttttc
6855400
<---------
TGA1a
--------->
TGA1a
--------->
ALFIN1
xxxxxxxxxxxxxxxxxxxxxxx>
smallRNA(si3)
<-----------
HVH21
=====================
bZIP_bZIP
--------->
TGA1a
================================
bZIP_DOF
<---------
TGA1a
<---------
O2
--------->
ALFIN1
--------->
O2
<---------
MYB52(1)
================================
bZIP_DOF
<---------
ANAC46
========================
MYC_MYB
=============
MYC_MYB
--------->
At1g77200
--------->
DREB2C(2)
------->
GAMYB
--------->
O2
--------->
DEAR4(1)
----------->
HVH21
--------->
DEAR3(1)
<xxxxxxxxxxxxxxxx
smallRNA(s)
--------->
DEAR3(2)
----------->
GT1
--------->
MYB46(3)
<---------
ANAC46
<---------
ALFIN1
<------
NtERF2
--------->
AtMYB61
<---------
O2
<---------
MYB55(2)
=====================
bZIP_DOF
--------->
MYB46(3)
=====================
bZIP_DOF
<---------
ETT(1)
------>
NtERF2
<----------
DOF2
--------->
HSFC1(2)
--------->
DEAR3(1)
-------
===========================================
bZIP_DOF
<------
-------
DOF2
<---------
HSFC1(2)
--------->
ATERF1(1)
<------
---->
ID1
<---------
HSFB2a(1)
--------->
DEAR3(2)
<-----------
TBP
=============================================
bZIP_DOF
----------->
GT1
<--
-
DOF2
*
TSS
--------->
HSFB2a(1)
------>
NtERF2
---------->
DOF2
---------->
DOF2
---------->
DOF2
tttttctttggcat
tagaacagaaatttccgaccaccgacgtgaggccgacgttggggaaaaagaagcgaaacgaagaaaagaaaggtttttaaaagata
6855500
<---------
ARR11(3)
--------->
ARR11(3)
--------->
GLK1(1)
--------->
RVE1(1)
<---------
RVE1(1)
<---------
CCA1(1)
--------->
MYB52(1)
--------->
CCA1(1)
------>
MYB83
<xxxxxxxxxxxxxxxxxxxxxxx
smallRNA(le3)
------>
MYB46(1)
<---------
GLK1(1)
xxxxxxxxxxxxxxxxxxxxxxx>
smallRNA(se3)
<---------
ARR11(3)
<---------
MYB46(2)
--------->
ARR11(3)
<-----------
RAV1(1)
<xxxxxxxxxxxxxxxxxxxxxxx
smallRNA(le3)
<---------
TOE2(3)
--------->
MYB55(1)
<---------
TOE2(3)
-->
ARR11(3)
<---------
AHL20(2)
<---------
MYB55(2)
<----------
DOF2
---
GLK1(2)
<---------
AHL20(2)
--------->
MYB46(3)
------>
MYB83
-------
---
ARR11(3)
<------
ZmHOX2a(2)
<-----------
HVH21
--------->
TOE2(3)
------>
MYB46(1)
-------->
P
--------
DOF2
--------->
AHL20(2)
--------->
AtMYB61
<---------
MYB59
<-----------
GT1
ctttgaatatagagatcgaatttaatgttgtttctgtcaccaaacgctcagcctaaatcgaagctctacctatctttaagatatctattatctaccatgc
6855600
--------->
ARR11(3)
--------->
YAB1
<---------
ICU4
--------->
YAB1
--------->
AHL20(2)
<---------
ANAC58
--------->
AHL20(2)
<----
<---------
ANAC58
<-----------
GT1
--------
---------->
ID1
<-----------
GT1
<---------
AHL20(2)
<---------
STY1(2)
<------
ZmHOX2a(1)
--------->
AHL20(2)
--------->
ANAC55(2)
--------->
STY1(2)
--------->
HSFB2a(2)
<---------
ANAC46
<----------
DOF2
------>
MYB46(1)
--------->
MYB46(3)
<-----------
GT1
<---------
ARR11(3)
------>
MYB83
-->
AtLEC2
<----------
DOF2
<---------
AHL20(2)
--------->
AHL20(2)
--------->
TOE2(3)
atcaactactaggactactctttttttgcgttttattaattatctttttacttatttaattttctataatgtaatcttgtttttcttaacctagctagta
6855700
<---------
AHL20(2)
--------->
AHL20(1)
<---------
AHL20(1)
--------->
AHL20(2)
<---------
ANAC46
<---------
AHL20(2)
----------->
GT1
--------->
ATHB12
--------->
AHL20(2)
<---------
AtMYB61
--------->
CCA1(2)
<---------
ARR11(3)
--------->
ALFIN1
<---------
AHL20(1)
--------->
ARR11(3)
--------->
AHL20(2)
--------->
AHL20(1)
--------->
AHL20(2)
<---------
AHL20(1)
--------->
AHL20(2)
--------->
AHL20(1)
-----
<---------
AHL20(2)
<---------
AHL20(2)
--------->
AHL20(2)
------
-----
AHL20(1)
--------->
AHL20(2)
--------->
YAB1
-------
--->
GT1
<---------
ANAC46
--------->
AHL20(2)
--------->
AHL20(2)
------->
GAMYB
<---------
YAB1
---
tattttattttggtgtggtgaacatccaaattaatatataagaatgtttgaaaaaataatatattaatatcaacgctcattgtgttcttataacaaaaaa
6855800
<---------
TOE2(3)
<---------
ANAC58
<--------
<---------
ANAC46
<---------
ATHB51
--------->
DAG2
<---------
YAB1
<---------
ATHB12
---------->
DOF2
<-----------
GT1
----------->
GT1
--------->
ICU4
--------->
AHL20(2)
<---------
MYB52(1)
--------------->
AGL15
<---------
MYB52(1)
--------->
AHL20(2)
<---------
ANAC58
<---------------
AGL15
--------->
ARR11(3)
--
------>
GT1
<----------
DOF2
<---------
DAG2
---------->
DOF2
<---------
AHL20(2)
--->
DAG2
<---------
ANAC58
<----------
DOF2
<---------
YAB1
--------->
AHL20(2)
--->
DOF2
--------->
MYB111(1)
<---------
ANAC58
<-----------
RAV1(1)
<-------
GAMYB
<-----
------>
AHL20(2)
<---------
ANAC58
<---------
ANAC58
<---------
AHL20(2)
<---------
ARR11(3)
------
gtaaataaaaaagtagttgctttcgtttattaacattgcttttctatatagagtttatattatgttgcataatatgaaaggtctgttatccaaataatta
6855900
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AGI:
At2g15720.1
Description:
transposable element gene. non-LTR retrotransposon family (LINE), has a 5.4e-35 P-value blast match to GB:AAB41224 ORF2 (LINE-element) (Rattus norvegicus)
Range:
from: 6852467
to: 6855414
Orientation: Reverse
Links:
TAIR
MIPS
Please cite the corresponding
publications
when using AthaMap.