Home Tools   - Search   - Colocalization   - Gene Analysis   - Gene Identification   - Small RNA Targets   - MicroRNA Targets Description Documentation Citations Downloads Publications History Contact Links Disclaimer	Search   Chromosome 1 Chromosome 2 Chromosome 3 Chromosome 4 Chromosome 5    Position Exon region Intron region UTR region AGI % Restriction to highly conserved TF binding sites (0-100)   Go to graphical and table display  1        10        20        30        40        50        60        70        80        90        100                                                                <---------AHL20(2)               <-----                                                              --------->AHL20(2)               ------                                                          <---------YAB1                     <-------                                                         --------->AHL20(1)                  --------                                                        <---------AHL20(2)                 --------->AHL20(2)                                                        --------->ATHB51                   <---------AHL20(2)                                                <---------AHL20(2)                       --------->AHL20(2)              <---------AHL20(2)               <---------AHL20(2) --------->AHL20(2)     <---------AHL20(2)       --------->HSFB2a(2)                     --------->AHL20(2) <---------AHL20(2)   <---------AHL20(2)       <---------HSFB2a(2)              --------->At4g35610  --------->AHL20(2)        --------->AHL20(2)    <----------DOF2                 <-----------GT1     --------->AHL20(2)           --------->AHL20(2) <---------ARR11(3)            <---------AHL20(2)   --------->AHL20(2)              <---------AHL20(1) --------->ARR11(3)  --------->ANAC46   <---------At4g35610 <---------AHL20(2)      --------->AHL20(1)   aactatcttttggaaattaatccaaacaactatttttttttcagcataaataaatgaattattttaaattaaaaatgtttgtataatatatatatatata  6209700                                                                                     <---------PCF2                                                                                <---------ANAC58                                                           <---------AHL20(2)   --------->ALFIN1                                                          --------->AHL20(1)    <-----------RAV1(1)                                                     --------->AHL20(2)         <---------ANAC58                                                   <---------AHL20(2)           <---------ANAC46          --------->ALFIN1                   <---------ANAC55(2)          <-------MYC3          <-----------RAV1(1)                --------->ANAC55(2)          ------->MYC3 ----AHL20(2)                              --------->AHL20(2)  <---------AHL20(2) --------->ALFIN1 --->AHL20(2)                       <---------ANAC55(2)  <---------AHL20(2)<<<<<<<<CAMTA3           - --AHL20(2)             --------->MYB59    <-----------GT1<---------AHL20(1)  <---------ANAC46      - ->AHL20(2)    <---------ANAC46     ----------->GT1--------->AHL20(2)    --------->ANAC46    --------   tatagttatagagtgttgcatatagttagataaaaaatatgtaaattacatatttttatatatattttaaaatccacgcgttgtgtgggacattacctag  6209800                                                                                                    <                                                                                                    <                                                                                                    -                                                                                                    <                                                                                                    <                                                                                                    <                                                                                                    <                                                                                                    <                                                                                                    <                                                                                                    <                                                                                                    <                                                                                                    <                                                                                                   <-                <----------DOF2                             <------MYB83                           --          --------->CCA1(2)                                 <---------ANAC46                   ------         <---------ARR11(3)                                 <------MYB46(1)          --------->RAP2.6(3)         --------->ARR11(3)                                 ----------->GT1         <---------ARR14(2) -------->AHL20(1)                                         --------->MYB46(2)       --------->MYB52(1) -------->ARR11(3)                             ------->TEIL<---------MYB46(3)       --------->ARR14(2) ------------->WRI1     --------->YAB1  --------->AHL20(2) <---------AtMYB61        <-----------ARR10   tatatattgaagatataactttggtttcataaaaaaaaaaaaaaaaatgaaactatagggtttggtgaaaatatgtctaatgggcatatcggcccattag  6209900          <---------ALFIN1         --------->MYB46(3)       --------->ANAC46      --------->ZAT18      <---------ZAT18     --------->ATERF1(1)     --------->ANAC58     --------->ANAC58     <------NtERF2    ------>NtERF2    <---------ZAT18    --------->PCF2   <---------ANAC46   --------->DEAR3(1)  <------NtERF2  --------->ATERF1(1) ------>NtERF2 <---------RAP2.6(1) <---------RAP2.3(1) <---------ATERF1(1)                                                         <---------ANAC55(2) <---------ERF1                                                              --------->ANAC58 <---------DEAR4(2)                                                          --------->ANAC58 <---------ORA47(2)                                                          --------->ANAC55(1) <---------RRTF1(1)                                                    <---------ANAC46 ---------ANAC58                                                     --------->MYB52(1) ---------ANAC46                                                    ----------->HVH21 -------->ATERF1(2)                                                <-----------HVH21 ---------ANAC58                                                  <---------ANAC58 ---------RRTF1(2)                                                <---------O2 ---------DREB2C(2)                                               --------->O2 ---------RAP2.3(3)                                               --------->ANAC55(2) ---------RAP2.3(2)                                               <---------ANAC55(2) ---------ATERF1(2)                    ----------->RAV1(2)        <---------ANAC58 ---------RRTF1(3)                   <---------ALFIN1             <---------TGA1a ---------RAP2.6(2)                 --------->MYB46(3)            --------->TGA1a ---------DEAR3(1)                <-----------GT1                ---------------------->TaNAC69(1) --------ABI4(1)          <---------MYB52(1)                 --------->At4g35610           <---------MYB52(1) ------->ATERF1(1)       <-----------HVH21            <---------ARR11(3)     --------->ANAC55(2)    - --->MYB52(2)            <-----------TGA1             --------->ARR11(3)     --------->ANAC46   <----   tggcggcgcgcaccactctaaataaaccgtcattcttcaccacctgttagaagtaagataatcggcagacgtgacggacacgaaactgaaacccttagat  6210000                                               <---------TOE2(3)                                     ----------->HVH21                                    <------NtERF2<------ZmHOX2a(1)                                  <                    --------------------->WRI1 ------------------------>ANAC81                  -----                  ---------->ID1  <---------ANAC46                 ----------->TGA1             <----     <---------LBD16<----------DOF2--------->LBD16           XXXXXXXXXXXXXXXXXXXX>MIR3933<---------ANAC46 ----------->CBF <-----------GT1  --------->ETT(1)    ---------->DOF2 *TSS            ------>ZmHOX2a(1) -----GLK1(1)<----------DOF2     <---------LBD16----------->GT1  --------->At4g35610----------->RAV1(2)   ttctcaatcgggaggcttttttcttttttttttttgccggagacagagtaaggaaacaaagagaagaagatgacgactcgaataactcctggtgtatgag  6210100                --------->ANAC58           --------->AtMYB61                --------->bZIP60(2)        <---------ALFIN1                --------->ANAC58         ------>NtERF2              <---------ALFIN1          --------->DEAR3(1)             <---------REM1(2)        ------>NtERF2             -------->P               <---------ATERF1(1)                                        <---         ------>NtERF2               --------->ANAC58                                       <--------      --------->HSFB2a(2)    <---------ARR14(2)                                 --------->AHL20(1)   ----------------------->TaNAC69(2)--------->ANAC58                           <---------AHL20(2) -----------ARR10           <------ZmHOX2a(1)                                   <---------AHL20(1) ---->At4g35610 --------->ANAC46     --------->RAP2.6(2)                        --------->AHL20(2) -----At4g35610 --------->ANAC55(1)  --------->ANAC46                     <----------DOF2------->TEIL   ctaatcttctcggccaacacgccactgagaggaaccaagacgccaccatctctcttccaacttccatgtctctcttctttattttattgtgcatctttct  6210200                                                                                            <--------                                                                                           <---------ANAC58                                                                                       --------->CCA1(2)            ----------->GT1                                                            --------->ARR14(1)           --------->DAG2        --------->ATHB12                                     --------->ARR11(3)     ---------->DOF2            --------->ICU4                                        --------->ARR14(2)  --------->ANAC55(2) <---------TOE2(3)                                               <---------ARR14(2)  <---------ANAC55(2) <---------TOE1(3)                                               --------->ARR11(1)  --------->ANAC58<---------AHL20(2)                                                  <---------ARR11(3)  --------->ANAC58--------->AHL20(2)                           --------------------->WRI1  <---------ANAC58 ------------AtSPL3<---------AHL20(2)   ----------->GT1        <----------DOF2      ----------->ARR10 --DOF2   ---------->DOF2<---------ANAC46           ------>ZmHOX2a(2)        <---------GLK1(1)   gagtacgtaaagaaaagtaattttatggtttggaatgatttatggtgaaactgatccattctcttctttgtatttttagatttctgaagatttgctttgg  6210300                                                                                  <-------TEIL                                                                               <------MYB46(1)                                                                               <------MYB83                          <--------P                                          <---------AtMYB61                        <------MYB83                                          --------->MYB59               --------->LBD16                                            <------MYB46(1)             <---------LBD16                                              <------MYB83           --------->ANAC46         <---------YAB1                       --------->MYB59           --------->ANAC58   --------->AHL20(2)                         <---------AtMYB61   <---------ANAC46     <------MYB46(1)   <---------CCA1(2)         <---------TOE1(3) --DOF2    --------->ANAC58 ----------->GT1------->TEIL             <---------TOE2(3)   gaattgtttgtacaagccggatgagttggtaagttaatatcaatgtatctcgtttagtttcgaatggtttagggtttggtttggttcatatttctgacat  6210400                                                                                            ---------                                                                                          --------->ARR11(3)                                                                                         <---------At4g35610                                                                                       <-------------                                                                                <---------ICU4                                                                                --------->YAB1                                                                             --------------->AGL15                                                                             --------->TOE2(3)                                                                             <---------------AGL15                                                                            ----------------->AG                                                                            ----------------->AGL1                                                                            <-----------------AGL2                                                                            ----------------->AGL2                                            <----------DOF2                 ----------------->AGL3                 <---------MYB52(1)     <---------ANAC58          <-------TEIL --------->ICU4             ------>ZmHOX2a(1)          <---------ANAC58        <---------GLK1(2)     <------ZmHOX2a(1)       <-----------GT1                <---------DOF5.7(2)       --------->ARR14(2)  <---------TOE2(3)      <-----------GT1               <---------MYB52(1)          <---------ARR14(2)--------->ICU4   tagcttatttatctcctctgttttttgaatttgtatcagttagcgtctttattcaacaaaaatttggattcgttcaattccataatgaggaagatgctga  6210500                                                                      <-----------GT1                                                                  --------->ATHB12                                                                  <---------ICU4                                                                  <--------ATHB1                                                                  --------->YAB1                                                                 --------->ICU4                       <---------DAG2                            <---------YAB1                      --------->TOE2(3)                          <---------ATHB12                   <-----------GT1                           <-------TEIL                         ---         <---------ZAT6<----------DOF2                    <---------ANAC58                       ----         ----------->GT1<---------MYB52(1)                <---------ANAC58                   <------- >At4g35610 <-----------GT1               <---------YAB1 <---------------AtSPL8              <------- --------WRI1 <---------YAB1     <------ZmHOX2a(1)   <----------DOF2<---------WOX13(1)       <-------   ctatgtaagtagtgttactattttcctttatgtgaggagttttttttatagacttcttttgggtacaatgattaacaaatttcagttttttttttgtgtg  6210600  Previous    Next  AGI:  At2g14550.1    Description:  pseudogene, putative pre-mRNA splicing factor, non-consensus splice donor TA at exon 5; blastp match of 67% identity and 1.1e-68 P-value to GP|28374170|gb|AAH45264.1||BC045264 Similar to splicing factor 3b, subunit 4, 49kD {Xenopus laevis} Range:  from: 6210070    to: 6211828    Orientation: Forward Links:  TAIR  MIPS      Please cite the corresponding publications when using AthaMap.
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