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Chromosome 1
Chromosome 2
Chromosome 3
Chromosome 4
Chromosome 5
Position
Exon region
Intron region
UTR region
AGI
% Restriction to highly conserved TF binding sites (0-100)
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1 10 20 30 40 50 60 70 80 90 100
<---------
AHL20(2)
<-----
--------->
AHL20(2)
------
<---------
YAB1
<-------
--------->
AHL20(1)
--------
<---------
AHL20(2)
--------->
AHL20(2)
--------->
ATHB51
<---------
AHL20(2)
<---------
AHL20(2)
--------->
AHL20(2)
<---------
AHL20(2)
<---------
AHL20(2)
--------->
AHL20(2)
<---------
AHL20(2)
--------->
HSFB2a(2)
--------->
AHL20(2)
<---------
AHL20(2)
<---------
AHL20(2)
<---------
HSFB2a(2)
--------->
At4g35610
--------->
AHL20(2)
--------->
AHL20(2)
<----------
DOF2
<-----------
GT1
--------->
AHL20(2)
--------->
AHL20(2)
<---------
ARR11(3)
<---------
AHL20(2)
--------->
AHL20(2)
<---------
AHL20(1)
--------->
ARR11(3)
--------->
ANAC46
<---------
At4g35610
<---------
AHL20(2)
--------->
AHL20(1)
aactatcttttggaaattaatccaaacaactatttttttttcagcataaataaatgaattattttaaattaaaaatgtttgtataatatatatatatata
6209700
<---------
PCF2
<---------
ANAC58
<---------
AHL20(2)
--------->
ALFIN1
--------->
AHL20(1)
<-----------
RAV1(1)
--------->
AHL20(2)
<---------
ANAC58
<---------
AHL20(2)
<---------
ANAC46
--------->
ALFIN1
<---------
ANAC55(2)
<-------
MYC3
<-----------
RAV1(1)
--------->
ANAC55(2)
------->
MYC3
----
AHL20(2)
--------->
AHL20(2)
<---------
AHL20(2)
--------->
ALFIN1
--->
AHL20(2)
<---------
ANAC55(2)
<---------
AHL20(2)
<<<<<<<<
CAMTA3
-
--
AHL20(2)
--------->
MYB59
<-----------
GT1
<---------
AHL20(1)
<---------
ANAC46
-
->
AHL20(2)
<---------
ANAC46
----------->
GT1
--------->
AHL20(2)
--------->
ANAC46
--------
tatagttatagagtgttgcatatagttagataaaaaatatgtaaattacatatttttatatatattttaaaatccacgcgttgtgtgggacattacctag
6209800
<
<
-
<
<
<
<
<
<
<
<
<
<-
<----------
DOF2
<------
MYB83
--
--------->
CCA1(2)
<---------
ANAC46
------
<---------
ARR11(3)
<------
MYB46(1)
--------->
RAP2.6(3)
--------->
ARR11(3)
----------->
GT1
<---------
ARR14(2)
-------->
AHL20(1)
--------->
MYB46(2)
--------->
MYB52(1)
-------->
ARR11(3)
------->
TEIL
<---------
MYB46(3)
--------->
ARR14(2)
------------->
WRI1
--------->
YAB1
--------->
AHL20(2)
<---------
AtMYB61
<-----------
ARR10
tatatattgaagatataactttggtttcataaaaaaaaaaaaaaaaatgaaactatagggtttggtgaaaatatgtctaatgggcatatcggcccattag
6209900
<---------
ALFIN1
--------->
MYB46(3)
--------->
ANAC46
--------->
ZAT18
<---------
ZAT18
--------->
ATERF1(1)
--------->
ANAC58
--------->
ANAC58
<------
NtERF2
------>
NtERF2
<---------
ZAT18
--------->
PCF2
<---------
ANAC46
--------->
DEAR3(1)
<------
NtERF2
--------->
ATERF1(1)
------>
NtERF2
<---------
RAP2.6(1)
<---------
RAP2.3(1)
<---------
ATERF1(1)
<---------
ANAC55(2)
<---------
ERF1
--------->
ANAC58
<---------
DEAR4(2)
--------->
ANAC58
<---------
ORA47(2)
--------->
ANAC55(1)
<---------
RRTF1(1)
<---------
ANAC46
---------
ANAC58
--------->
MYB52(1)
---------
ANAC46
----------->
HVH21
-------->
ATERF1(2)
<-----------
HVH21
---------
ANAC58
<---------
ANAC58
---------
RRTF1(2)
<---------
O2
---------
DREB2C(2)
--------->
O2
---------
RAP2.3(3)
--------->
ANAC55(2)
---------
RAP2.3(2)
<---------
ANAC55(2)
---------
ATERF1(2)
----------->
RAV1(2)
<---------
ANAC58
---------
RRTF1(3)
<---------
ALFIN1
<---------
TGA1a
---------
RAP2.6(2)
--------->
MYB46(3)
--------->
TGA1a
---------
DEAR3(1)
<-----------
GT1
---------------------->
TaNAC69(1)
--------
ABI4(1)
<---------
MYB52(1)
--------->
At4g35610
<---------
MYB52(1)
------->
ATERF1(1)
<-----------
HVH21
<---------
ARR11(3)
--------->
ANAC55(2)
-
--->
MYB52(2)
<-----------
TGA1
--------->
ARR11(3)
--------->
ANAC46
<----
tggcggcgcgcaccactctaaataaaccgtcattcttcaccacctgttagaagtaagataatcggcagacgtgacggacacgaaactgaaacccttagat
6210000
<---------
TOE2(3)
----------->
HVH21
<------
NtERF2
<------
ZmHOX2a(1)
<
--------------------->
WRI1
------------------------>
ANAC81
-----
---------->
ID1
<---------
ANAC46
----------->
TGA1
<----
<---------
LBD16
<----------
DOF2
--------->
LBD16
XXXXXXXXXXXXXXXXXXXX>
MIR3933
<---------
ANAC46
----------->
CBF
<-----------
GT1
--------->
ETT(1)
---------->
DOF2
*
TSS
------>
ZmHOX2a(1)
-----
GLK1(1)
<----------
DOF2
<---------
LBD16
----------->
GT1
--------->
At4g35610
----------->
RAV1(2)
ttctcaatcgggaggcttttttcttttttttttttgccggagacagagtaaggaaacaaagagaagaag
atgacgactcgaataactcctggtgtatgag
6210100
--------->
ANAC58
--------->
AtMYB61
--------->
bZIP60(2)
<---------
ALFIN1
--------->
ANAC58
------>
NtERF2
<---------
ALFIN1
--------->
DEAR3(1)
<---------
REM1(2)
------>
NtERF2
-------->
P
<---------
ATERF1(1)
<---
------>
NtERF2
--------->
ANAC58
<--------
--------->
HSFB2a(2)
<---------
ARR14(2)
--------->
AHL20(1)
----------------------->
TaNAC69(2)
--------->
ANAC58
<---------
AHL20(2)
-----------
ARR10
<------
ZmHOX2a(1)
<---------
AHL20(1)
---->
At4g35610
--------->
ANAC46
--------->
RAP2.6(2)
--------->
AHL20(2)
-----
At4g35610
--------->
ANAC55(1)
--------->
ANAC46
<----------
DOF2
------->
TEIL
ctaatcttctcggccaacacgccactgagaggaaccaagacgccaccatctctcttccaacttccatgtctctcttctttattttattgtgcatctttct
6210200
<--------
<---------
ANAC58
--------->
CCA1(2)
----------->
GT1
--------->
ARR14(1)
--------->
DAG2
--------->
ATHB12
--------->
ARR11(3)
---------->
DOF2
--------->
ICU4
--------->
ARR14(2)
--------->
ANAC55(2)
<---------
TOE2(3)
<---------
ARR14(2)
<---------
ANAC55(2)
<---------
TOE1(3)
--------->
ARR11(1)
--------->
ANAC58
<---------
AHL20(2)
<---------
ARR11(3)
--------->
ANAC58
--------->
AHL20(2)
--------------------->
WRI1
<---------
ANAC58
------------
AtSPL3
<---------
AHL20(2)
----------->
GT1
<----------
DOF2
----------->
ARR10
--
DOF2
---------->
DOF2
<---------
ANAC46
------>
ZmHOX2a(2)
<---------
GLK1(1)
gagtacgtaaagaaaagtaattttatggtttggaatgatttatggtgaaactgatccattctcttctttgtatttttagatttctgaagatttgctttgg
6210300
<-------
TEIL
<------
MYB46(1)
<------
MYB83
<--------
P
<---------
AtMYB61
<------
MYB83
--------->
MYB59
--------->
LBD16
<------
MYB46(1)
<---------
LBD16
<------
MYB83
--------->
ANAC46
<---------
YAB1
--------->
MYB59
--------->
ANAC58
--------->
AHL20(2)
<---------
AtMYB61
<---------
ANAC46
<------
MYB46(1)
<---------
CCA1(2)
<---------
TOE1(3)
--
DOF2
--------->
ANAC58
----------->
GT1
------->
TEIL
<---------
TOE2(3)
gaattgtttgtacaagccggatgagttggtaagttaatatcaatgtatctcgtttagtttcgaatggtttagggtttggtttggttcatatttctgacat
6210400
---------
--------->
ARR11(3)
<---------
At4g35610
<-------------
<---------
ICU4
--------->
YAB1
--------------->
AGL15
--------->
TOE2(3)
<---------------
AGL15
----------------->
AG
----------------->
AGL1
<-----------------
AGL2
----------------->
AGL2
<----------
DOF2
----------------->
AGL3
<---------
MYB52(1)
<---------
ANAC58
<-------
TEIL
--------->
ICU4
------>
ZmHOX2a(1)
<---------
ANAC58
<---------
GLK1(2)
<------
ZmHOX2a(1)
<-----------
GT1
<---------
DOF5.7(2)
--------->
ARR14(2)
<---------
TOE2(3)
<-----------
GT1
<---------
MYB52(1)
<---------
ARR14(2)
--------->
ICU4
tagcttatttatctcctctgttttttgaatttgtatcagttagcgtctttattcaacaaaaatttggattcgttcaattccataatgaggaagatgctga
6210500
<-----------
GT1
--------->
ATHB12
<---------
ICU4
<--------
ATHB1
--------->
YAB1
--------->
ICU4
<---------
DAG2
<---------
YAB1
--------->
TOE2(3)
<---------
ATHB12
<-----------
GT1
<-------
TEIL
---
<---------
ZAT6
<----------
DOF2
<---------
ANAC58
----
----------->
GT1
<---------
MYB52(1)
<---------
ANAC58
<-------
>
At4g35610
<-----------
GT1
<---------
YAB1
<---------------
AtSPL8
<-------
--------
WRI1
<---------
YAB1
<------
ZmHOX2a(1)
<----------
DOF2
<---------
WOX13(1)
<-------
ctatgtaagtagtgttactattttcctttatgtgaggagttttttttatagacttcttttgggtacaatgattaacaaatttcagttttttttttgtgtg
6210600
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AGI:
At2g14550.1
Description:
pseudogene, putative pre-mRNA splicing factor, non-consensus splice donor TA at exon 5; blastp match of 67% identity and 1.1e-68 P-value to GP|28374170|gb|AAH45264.1||BC045264 Similar to splicing factor 3b, subunit 4, 49kD {Xenopus laevis}
Range:
from: 6210070
to: 6211828
Orientation: Forward
Links:
TAIR
MIPS
Please cite the corresponding
publications
when using AthaMap.