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Chromosome 1
Chromosome 2
Chromosome 3
Chromosome 4
Chromosome 5
Position
Exon region
Intron region
UTR region
AGI
% Restriction to highly conserved TF binding sites (0-100)
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1 10 20 30 40 50 60 70 80 90 100
--------->
ARR11(3)
<---------
ARR11(3)
--------->
RVE1(1)
--------->
GLK1(1)
<---------
GLK1(1)
<-----
--------->
CCA1(1)
<---------
ARR14(2)
<----------
DOF2
--------->
ARR11(3)
<---------
MYB52(1)
--------->
ANAC58
--------------->
AGL15
<---------
RAP2.6(3)
<---------
DAG2
<---------------
AGL15
<---------
ANAC58
------->
TEIL
<----------
DOF2
<---------
ANAC46
<---------
CCA1(2)
<-------
<---------
CCA1(2)
--------->
ANAC58
--------->
YAB1
<---------
ARR11(3)
<---------
ANAC58
tttgtatcccttgaacctttcccaagcttcacaaaaactttcattactcctttgagtgaagctagatatctcatttctcaaccttgccgttcttgttgtg
5495500
<---------
GLK1(2)
<---------
HSFB2a(1)
<-------
TEIL
--------->
HSFB2a(1)
<---------
TOE2(3)
------>
ZmHOX2a(2)
<----------
DOF2
<---------
TOE1(3)
<---------
ARR11(3)
<---------
ARR11(3)
<---------
AtMYB61
<-------
GAMYB
--------->
ARR14(2)
--------->
ARR11(3)
<----------
DOF2
<---------
REM1(1)
<---------
ARR14(2)
----
ANAC46
<---------
HSFC1(2)
----------->
HVH21
----------->
ARR10
--------->
ZAT2
--
ANAC46
<------
ZmHOX2a(1)
--------->
ALFIN1
<--------
P
--------->
ARR14(2)
--
gagaagaactttgagaggaaggctcttttgcattggtcccaagaggtgatggagcgttgaggtagattcttctcccaaatacgagctcgatctccaagag
5495600
<------
ZmHOX2a(2)
--------->
ARR14(2)
<---------
ARR14(2)
<---------
ARR11(3)
--------->
ARR11(3)
------>
ZmHOX2a(2)
--------->
GLK1(1)
--------->
ANAC46
<---------
HSFB2a(2)
<---------
GLK1(1)
<xxxxxxxxxxxxxxxxxxxxxxx
smallRNA(i2)
---------->
DOF2
--------->
LBD16
<---------
At5g28300
--------->
HSFB2a(2)
<xxxxxxxxxxxxxxxxxxxxxxx
smallRNA(s2)
----------->
RAV1(1)
==============
<---------
At4g35610
<-----------
GT1
<---------
HSFC1(1)
---
------->
MYB52(1)
------->
TEIL
------>
ZmHOX2a(2)
--------->
ANAC46
>>>>>>>
ZML2
-------
aaaacgggaagagtctaagtttgaatgcatcttccgagatcccattgattttcaccgtgctacacaacatatcaaattgttctagatgatccaaagggtc
5495700
---------->
DOF2
--------->
TOE2(3)
<---------
AHL20(2)
--------->
AHL20(2)
--------->
ATHB12
--------->
YAB1
<---------
ANAC58
--------->
LBD16
====
HOX2a_HOX2a
xxxxxxxxxxxxxxxxxxxx>
smallRNA(se3)
------->
GAMYB
--->
ZmHOX2a(1)
<-----------
GT1
<---------
ANAC58
<---------
MYB46(3)
<------
ZmHOX2a(1)
-->
ARR14(2)
<---------
TOE2(3)
<XXXXXXXXXXXXXXXXXXXX
MIR843
<---------
LBD16
<---
ctccattgataaaccatggaacttagaggtttgaaccatgttgatgaggcttgatttaatctcaaagttgttgttctcaaccggaggagcttgaataccg
5495800
<-------
TEIL
<------
MYB46(1)
<------
MYB83
<---------
WOX13(1)
------>
MYB83
--------->
ATHB12
<--------
P
------>
MYB46(1)
--------->
ANAC58
<---------
ZAT18
<-----------
GT1
--------->
ANAC46
--------->
ZAT18
--------->
At4g35610
--------->
ANAC58
<---------
MYB46(3)
<---------
At4g35610
--------->
LBD16
<--------
P
<-------
GAMYB
<---------
ANAC46
<---------
ANAC58
<---------
LBD16
---------->
DOF2
<---------
WOX13(1)
<-----------
RAV1(1)
<---------
ANAC58
------
MYB52(1)
--------->
MYB59
<---------
MYB46(3)
<---------
TOE2(3)
--------->
AtMYB61
<--
tttctatttccacggatgtttggttcatcaaaggctccaattggttgatgagcacttggttgatgttgtggcatatgaccatccctattagcttggccat
5495900
<---------
ANAC46
<---------
ZAT2
--------->
ZAT2
<---------
ALFIN1
<---------
ALFIN1
------->
GAMYB
<------
NtERF2
<---------
ARR14(2)
<------
NtERF2
----------->
TGA1
--------->
ANAC58
----------->
HVH21
<-------
--------->
ANAC58
--------->
YAB1
<---------
ZAT2
<---------
ARR14(2)
--------->
PCF5
<---------
ICU4
--------->
ZAT2
--------->
ARR14(2)
<---------
ICU4
<---------
LBD16
<---------
ANAC46
<---------
ANAC58
--------->
ATHB51
--------->
LBD16
*
TSS
--------->
ARR14(2)
<---------
ANAC58
---------------
AGL1
<-------
TEIL
--------->
MYB52(1)
<----------
DOF2
-
ttccattatggcccccaactccgggttcattcat
gacgcataaccgagcaaggtgttcaagtcgttctcgttctcttcttgctctagcgttttctctttc
5496000
<-------
TEIL
<---------
DEAR3(2)
----------->
HVH21
<---------
MYB52(1)
<xxxxxxxxxxxxxxxx
smallRNA(i)
--------->
At5g28300
<---------
ANAC58
<---------
ANAC58
------->
TEIL
<---------
DEAR3(1)
<---------
ANAC46
------>
NtERF2
<------
MYB83
<----------
DOF2
<---------
ANAC58
xxxxxxxxxxxxxxxx>
smallRNA(i)
--------
<---------
ANAC58
<---------
ANAC58
<------
MYB46(1)
--------->
YAB1
--------->
MYB52(1)
xxxxxxxxxxxxxxxx>
smallRNA(i)
<---------
ALFIN1
<-------
TEIL
<---
---
DOF2
----------->
GT1
<---------
TOE2(3)
<---------
TOE2(2)
--------->
CCA1(2)
--------->
DOF2
<---------
CCA1(2)
<---------
ANAC58
<---------
TOE1(2)
--------->
ICU4
<-----
aaacaagcggatgtcgtgaatctcttctactaagtttgctcggccgtgacttcgtaggttcatacacctttaaaacaagagcaaagattcaagtataaag
5496100
<------
NtERF2
------>
NtERF2
--------->
DEAR3(1)
--------->
RAP2.3(1)
<---------
RAP2.3(1)
------->
GAMYB
<---------
ATERF1(1)
<---------
GLK1(1)
<---------
DEAR3(1)
--------->
GLK1(1)
<---------
ICU4
<---------
ATERF1(1)
--------->
ARR14(2)
<---------
YAB1
--------->
MYB52(1)
<---------
TOE2(3)
<---------
ARR14(2)
<---------
ICU4
--------->
LBD16
<---------
MYB52(2)
--------->
ICU4
<-----------
GT1
xxxxxxxxxxxxxxxxxxxxxxx>
smallRNA(se3)
----------->
GT1
<xxxxxxxxxxxxxxxx
smallRNA(i)
--------->
ANAC46
<--
-->
DOF2
---------->
DOF2
--------->
ANAC46
--------->
MYB52(1)
--------->
RAP2.6(3)
---
---
ZmHOX2a(1)
--------->
ANAC58
<---------
ICU4
--------->
DEAR3(2)
<---------
REM1(1)
----
TOE2(3)
---------->
DOF2
--------->
ANAC58
------>
ZmHOX2a(1)
--------->
MYB52(1)
<---------
TOE2(3)
gattagtaactaaagtaaaaggcttagtctcaagcaaatatgaaatcctaatggctaataactattgcaaaccggcaacggcgccaaattgatgtagcat
5496200
xxx
<--
-------->
HAHB4
<---------
ANAC58
--------->
ICU4
------->
GAMYB
<---------
ANAC46
<---------
AHL20(1)
<---------
MYB52(2)
<---------
ANAC58
--------->
AHL20(1)
--------->
WOX13(1)
<----------
DOF2
--------->
AHL20(2)
--------->
AHL20(2)
----------->
GT1
---
<---------
AHL20(2)
<---------
AHL20(2)
<---------
TOE2(3)
---
--------->
WOX13(1)
<---------
YAB1
xxxxxxxxxxxxxxxxxxxxxxx>
smallRNA(s2)
-------
AHL20(2)
<-----------
GT1
--------->
ANAC46
<---------
At4g35610
<--------
------>
AHL20(2)
--------->
MYB46(3)
--------->
At4g35610
--------->
TOE2(3)
--------->
DAG2
<---
ttatttcaattaattatcgaaccacaatttacaattaatcaactcaccaagaatacacaaaatttcttaatctaagctaataaggtgactttgagtgttc
5496300
--------->
YAB1
--------->
AtLEC2
--------->
TOE2(3)
--------->
ANAC58
--------->
ANAC58
xxxxxxxxxxxxxxxxxxxx>
smallRNA(s2)
--------->
ANAC58
-------------
AGL15
--------->
ANAC58
--------->
ANAC58
<<<<<
------------>
AGL15
--------->
ANAC58
---------->
DOF2
------
--->
ZmHOX2a(1)
--------->
AtLEC2
---------->
DOF2
------
-
ZAT6
<-----------
GT1
--------->
ANAC58
--------->
CCA1(2)
---------->
DOF2
---------->
DOF2
------
MYB59
--------->
WOX13(1)
----------->
GT1
--------->
ANAC58
---------->
DOF2
-----
ctaatcttagtaacaatgcattatcaagcaaacaatgcaaaacaagataaaagaaagcaagaaacaaaagactaacaagtttcgaaagtaaacaaagcgg
5496400
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AGI:
At2g13260.1
Description:
transposable element gene. gypsy-like retrotransposon family (Athila), has a 1.1e-121 P-value blast match to GB:CAA57397 Athila ORF 1 (Arabidopsis thaliana)
Range:
from: 5493497
to: 5495934
Orientation: Reverse
Links:
TAIR
MIPS
Please cite the corresponding
publications
when using AthaMap.
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