Search   Chromosome 1 Chromosome 2 Chromosome 3 Chromosome 4 Chromosome 5    Position Exon region Intron region UTR region AGI % Restriction to highly conserved TF binding sites (0-100)   Go to graphical and table display  1        10        20        30        40        50        60        70        80        90        100                                                                  --------->ARR11(3)                                                                <---------ARR11(3)                                                               --------->RVE1(1)                                                               --------->GLK1(1)                                                               <---------GLK1(1)               <-----                                                               --------->CCA1(1)      <---------ARR14(2)                                               <----------DOF2--------->ARR11(3)      <---------MYB52(1)                     --------->ANAC58       --------------->AGL15                    <---------RAP2.6(3)             <---------DAG2                 <---------------AGL15                   <---------ANAC58           ------->TEIL            <----------DOF2 <---------ANAC46   <---------CCA1(2)      <------- <---------CCA1(2)   --------->ANAC58 --------->YAB1          <---------ARR11(3)    <---------ANAC58   tttgtatcccttgaacctttcccaagcttcacaaaaactttcattactcctttgagtgaagctagatatctcatttctcaaccttgccgttcttgttgtg  5495500                                                              <---------GLK1(2)                 <---------HSFB2a(1)                        <-------TEIL                 --------->HSFB2a(1)                    <---------TOE2(3)               ------>ZmHOX2a(2)      <----------DOF2                                   <---------TOE1(3)             <---------ARR11(3)   <---------ARR11(3)         <---------AtMYB61     <-------GAMYB                     --------->ARR14(2)   --------->ARR11(3) <----------DOF2         <---------REM1(1)            <---------ARR14(2) ----ANAC46      <---------HSFC1(2)        ----------->HVH21----------->ARR10    --------->ZAT2 --ANAC46     <------ZmHOX2a(1)            --------->ALFIN1<--------P      --------->ARR14(2)      --   gagaagaactttgagaggaaggctcttttgcattggtcccaagaggtgatggagcgttgaggtagattcttctcccaaatacgagctcgatctccaagag  5495600                                    <------ZmHOX2a(2)                                   --------->ARR14(2)                                   <---------ARR14(2)                                   <---------ARR11(3)                                   --------->ARR11(3)                                  ------>ZmHOX2a(2)                                  --------->GLK1(1)          --------->ANAC46  <---------HSFB2a(2)                                  <---------GLK1(1)  <xxxxxxxxxxxxxxxxxxxxxxxsmallRNA(i2)---------->DOF2                                --------->LBD16   <---------At5g28300          --------->HSFB2a(2)                          <xxxxxxxxxxxxxxxxxxxxxxxsmallRNA(s2)----------->RAV1(1)      ==============                          <---------At4g35610    <-----------GT1               <---------HSFC1(1) --- ------->MYB52(1)        ------->TEIL------>ZmHOX2a(2)     --------->ANAC46    >>>>>>>ZML2    -------   aaaacgggaagagtctaagtttgaatgcatcttccgagatcccattgattttcaccgtgctacacaacatatcaaattgttctagatgatccaaagggtc  5495700                                                            ---------->DOF2                                                         --------->TOE2(3)                                                     <---------AHL20(2)                                                    --------->AHL20(2)                                                 --------->ATHB12    --------->YAB1                            <---------ANAC58                 --------->LBD16 ====HOX2a_HOX2a               xxxxxxxxxxxxxxxxxxxx>smallRNA(se3)             ------->GAMYB --->ZmHOX2a(1)               <-----------GT1 <---------ANAC58   <---------MYB46(3)<------ZmHOX2a(1) -->ARR14(2)           <---------TOE2(3) <XXXXXXXXXXXXXXXXXXXXMIR843         <---------LBD16     <---   ctccattgataaaccatggaacttagaggtttgaaccatgttgatgaggcttgatttaatctcaaagttgttgttctcaaccggaggagcttgaataccg  5495800                     <-------TEIL                  <------MYB46(1)                  <------MYB83                          <---------WOX13(1)    ------>MYB83              --------->ATHB12                          <--------P            ------>MYB46(1)         --------->ANAC58                       <---------ZAT18          <-----------GT1         --------->ANAC46                       --------->ZAT18       --------->At4g35610         --------->ANAC58                 <---------MYB46(3)          <---------At4g35610        --------->LBD16                  <--------P    <-------GAMYB<---------ANAC46    <---------ANAC58        <---------LBD16   ---------->DOF2<---------WOX13(1) <-----------RAV1(1)         <---------ANAC58 ------MYB52(1)  --------->MYB59       <---------MYB46(3)  <---------TOE2(3)--------->AtMYB61     <--   tttctatttccacggatgtttggttcatcaaaggctccaattggttgatgagcacttggttgatgttgtggcatatgaccatccctattagcttggccat  5495900                  <---------ANAC46              <---------ZAT2              --------->ZAT2             <---------ALFIN1            <---------ALFIN1             ------->GAMYB           <------NtERF2              <---------ARR14(2)          <------NtERF2       ----------->TGA1          --------->ANAC58    ----------->HVH21                                              <-------          --------->ANAC58  --------->YAB1  <---------ZAT2                             <---------ARR14(2)        --------->PCF5      <---------ICU4  --------->ZAT2                             --------->ARR14(2)   <---------ICU4<---------LBD16 <---------ANAC46                                   <---------ANAC58   --------->ATHB51--------->LBD16*TSS--------->ARR14(2)                            <---------ANAC58 ---------------AGL1   <-------TEIL   --------->MYB52(1)                       <----------DOF2      -   ttccattatggcccccaactccgggttcattcatgacgcataaccgagcaaggtgttcaagtcgttctcgttctcttcttgctctagcgttttctctttc  5496000                                                        <-------TEIL                                                     <---------DEAR3(2)                                           ----------->HVH21                                           <---------MYB52(1)                                           <xxxxxxxxxxxxxxxxsmallRNA(i)                                          --------->At5g28300                                         <---------ANAC58                                         <---------ANAC58                ------->TEIL            <---------DEAR3(1)           <---------ANAC46            ------>NtERF2 <------MYB83<----------DOF2           <---------ANAC58           xxxxxxxxxxxxxxxx>smallRNA(i)                           --------           <---------ANAC58        <---------ANAC58  <------MYB46(1)                      --------->YAB1  --------->MYB52(1)          xxxxxxxxxxxxxxxx>smallRNA(i)   <---------ALFIN1        <-------TEIL<--- ---DOF2   ----------->GT1   <---------TOE2(3)      <---------TOE2(2)               --------->CCA1(2) --------->DOF2<---------CCA1(2)   <---------ANAC58 <---------TOE1(2)            --------->ICU4<-----   aaacaagcggatgtcgtgaatctcttctactaagtttgctcggccgtgacttcgtaggttcatacacctttaaaacaagagcaaagattcaagtataaag  5496100                                                                                <------NtERF2                                                                               ------>NtERF2                                                                              --------->DEAR3(1)                                                                             --------->RAP2.3(1)                                                                            <---------RAP2.3(1)                                                                            ------->GAMYB                                                                            <---------ATERF1(1)                                        <---------GLK1(1)                  <---------DEAR3(1)                                        --------->GLK1(1)  <---------ICU4<---------ATERF1(1)                                  --------->ARR14(2)      <---------YAB1 --------->MYB52(1)         <---------TOE2(3)        <---------ARR14(2)    <---------ICU4--------->LBD16      <---------MYB52(2)          --------->ICU4        <-----------GT1 xxxxxxxxxxxxxxxxxxxxxxx>smallRNA(se3) ----------->GT1                 <xxxxxxxxxxxxxxxxsmallRNA(i)         --------->ANAC46            <-- -->DOF2---------->DOF2      --------->ANAC46 --------->MYB52(1)    --------->RAP2.6(3)           --- ---ZmHOX2a(1)               --------->ANAC58 <---------ICU4        --------->DEAR3(2)   <---------REM1(1) ----TOE2(3)  ---------->DOF2--------->ANAC58------>ZmHOX2a(1)     --------->MYB52(1)   <---------TOE2(3)   gattagtaactaaagtaaaaggcttagtctcaagcaaatatgaaatcctaatggctaataactattgcaaaccggcaacggcgccaaattgatgtagcat  5496200                                                                                                  xxx                                                                                                  <--           -------->HAHB4                                                                 <---------ANAC58          --------->ICU4                ------->GAMYB                                     <---------ANAC46       <---------AHL20(1)              <---------MYB52(2)                                 <---------ANAC58       --------->AHL20(1)        --------->WOX13(1)                                   <----------DOF2       --------->AHL20(2)       --------->AHL20(2)                              ----------->GT1   ---       <---------AHL20(2)       <---------AHL20(2)                             <---------TOE2(3)  ---    --------->WOX13(1)      <---------YAB1                        xxxxxxxxxxxxxxxxxxxxxxx>smallRNA(s2) -------AHL20(2)          <-----------GT1             --------->ANAC46  <---------At4g35610 <-------- ------>AHL20(2)  --------->MYB46(3)  --------->At4g35610     --------->TOE2(3)--------->DAG2    <---   ttatttcaattaattatcgaaccacaatttacaattaatcaactcaccaagaatacacaaaatttcttaatctaagctaataaggtgactttgagtgttc  5496300  --------->YAB1                --------->AtLEC2  --------->TOE2(3)        --------->ANAC58             --------->ANAC58 xxxxxxxxxxxxxxxxxxxx>smallRNA(s2)                  --------->ANAC58 -------------AGL15        --------->ANAC58         --------->ANAC58                            <<<<< ------------>AGL15    --------->ANAC58           ---------->DOF2                              ------ --->ZmHOX2a(1)        --------->AtLEC2       ---------->DOF2                                  ------ -ZAT6  <-----------GT1--------->ANAC58     --------->CCA1(2)  ---------->DOF2            ---------->DOF2 ------MYB59          --------->WOX13(1) ----------->GT1--------->ANAC58         ---------->DOF2-----   ctaatcttagtaacaatgcattatcaagcaaacaatgcaaaacaagataaaagaaagcaagaaacaaaagactaacaagtttcgaaagtaaacaaagcgg  5496400  Previous    Next  AGI:  At2g13260.1    Description:  transposable element gene. gypsy-like retrotransposon family (Athila), has a 1.1e-121 P-value blast match to GB:CAA57397 Athila ORF 1 (Arabidopsis thaliana) Range:  from: 5493497    to: 5495934    Orientation: Reverse Links:  TAIR  MIPS      Please cite the corresponding publications when using AthaMap.