Home Tools   - Search   - Colocalization   - Gene Analysis   - Gene Identification   - Small RNA Targets   - MicroRNA Targets Description Documentation Citations Downloads Publications History Contact Links Disclaimer	Search   Chromosome 1 Chromosome 2 Chromosome 3 Chromosome 4 Chromosome 5    Position Exon region Intron region UTR region AGI % Restriction to highly conserved TF binding sites (0-100)   Go to graphical and table display  1        10        20        30        40        50        60        70        80        90        100                                                  <---------ANAC58               ------>MYB83                                                <---------AtLEC2            <---------At4g35610                              ----------->GT1   <---------ANAC46            ----------->RAV1(2)                          <------ZmHOX2a(1)     <---------ANAC58 <----------DOF2 -------->ZAT18       ------>ZmHOX2a(1)    --------->ATHB12--------->ARR14(2)  ------>MYB46(1)<------ ---------ZAT14      --------->TOE2(3)    <---------YAB1<---------ICU4      --------->At4g35610 ------->AtMYB61 <---------ALFIN1  <-----------GT1     <---------YAB1     <-----------GT1     ------- -TOE2(3)       <xxxxxxxxxxxxxxxxsmallRNA(s) <---------WOX13(1)<xxxxxxxxxxxxxxxxxxxxxxxsmallRNA(i2) <   accacactattggattaccccatccttaggaatcgtttatccatttgattgcatgttatcatttctgctttgttattcacctgcctgctattgccatttc  3927600                                                      ------>MYB83                                                      -------->P                                                    ------->GAMYB                                                    --------->AtMYB61                                                   <---------MYB52(2)                                                   <---------MYB55(2)                                                   --------->MYB46(3)                                                  --------->ANAC58                                                  --------->ANAC58                                                  ------>MYB46(1)                                                  ------>MYB83                             <---------ARR11(3)                                                  -------->P  <---------ANAC46             --------->ARR11(3)         <XXXXXXXXXXXXXXXXXXXXMIR1886.1         --------->AtMYB61                          <---------   --------->AHL20(2)                          --------->MYB46(3)   <---------WOX13(1)    <---------CCA1(2)   <---------AHL20(2)                        <-----------GT1  <---------AtLEC2           xxxxxxxxxxxx ---ARR14(2)                               <---------AHL20(2)--------->ZAT2             --------->YAB1 -->ARR14(2)                        <------ZmHOX2a(1) ------>MYB46(1)     <xxxxxxxxxxxxxxxxxxxxsmallRNA(le3) ----------DOF2       <---------MYB52(1)  --------->YAB1     <---------ZAT2     <----------DOF2  <---   tgcttttaatttcatttcatttctgttattgcatactaggactattaaaaccaaccaactctctgcttggattgacttagagctttctgatcatatctca  3927700                                                                                                    <                                                                                                    <                                                                                                    -                                                                                                   --                                                       <---------ZAT6                        --------                      <---------WOX13(1)           <---------ARR14(2)                   =============                <---------ARR14(2)           ------->GAMYB   <---------TOE2(3)    ------>ZmHOX2a(1)<-              --------->LBD16  ------>ZmHOX2a(1)   --------->ARR14(2)<---------WOX13(1) -------------            <---------LBD16   --------->TOE2(3)   <------ZmHOX2a(1)--------->ATHB12    <------------- --ARR10   --------->MYB52(1)<xxxxxxxxxxxxxxxxxxxxxxxsmallRNA(le3)--------->AHL20(2)   -------------- xxxxxxxxxxx>smallRNA(le3)  <xxxxxxxxxxxxxxxxxxxxxxxsmallRNA(fl3) <---------AHL20(2)   <------------- ------At4g35610--------->ARR14(2)          --------->MYB46(3) <------ZmHOX2a(1) --------->TOE1(2) <-   tctgtttgcatcataccggattggattgacatcctaaaatactacaacgacaggatagtgttttaggattaattgactaaaatcctactaccaatttggg  3927800           <------MYB83           <---------ANAC58           <------MYB46(1)        <---------MYB52(1)       <xxxxxxxxxxxxxxxxxxxxxxxsmallRNA(fl3)     xxxxxxxxxxxxxxxxxxxxxxx>smallRNA(i2) -------GAMYB ---------At4g35610                           --------->TOE2(3) -------->At4g35610                           --------->TOE1(3) ------->ALFIN1 <xxxxxxxxxxxxxxxxxxxxxxxsmallRNA(le3) ->ALFIN1  <---------ANAC46         --------->ATHB12 ========================================MADS_MADS                  <---------------AtSPL8 ----------RAV1(1)                 --------->ICU4                   --------------->AtSPL8        --- -->AGL15  <---------ANAC58        <------ZmHOX2a(2)       <-------TEIL                         <---- ----AGL2 --------->MYB111(2)      <---------YAB1    <------ZmHOX2a(2)                    <---------- --->AGL1 <---------AtMYB61       --------->ARR11(3)<---------ARR11(3)           <----------DOF2<---- ----AGL1 --------->MYB46(2)      <---------ARR11(3)--------->ARR11(3)     --------->ANAC46<---------At4g35610 --------MYB46(3)      <-----------------AGL3----------->GT1      <-----------RAV1(1)    <-----------RAV1(2)   gctgttgccagtttggtgtttgtttgctatatttgagatcattagaaacgttaagatcaagttcatttttgttgtacaagttactttggtttcaggtacc  3927900                                                                                         --------->HSFB2a(1)                                                                                         --------->HSFC1(2)                                                                                         <---------HSFC1(2)                                                                                       <---------GLK1(2)                                                                  <---------REM1(2)    <---------ARR14(2)                                                              <xxxxxxxxxxxxxxxxxxxxxsmallRNA(fl3)                                                             xxxxxxxxxxxxxxxxxxxxx>smallRNA(i2)                    <---------CCA1(2)                        --------->AtLEC2          --------->ARR14(2)        <----------DOF2                                    <---------ANAC58         --------->YAB1    ------->GAMYB  ------->TEIL                            <---------ANAC58      --------->GLK1(1)  -------->P    --------->ANAC58                           <---------AtLEC2      <---------GLK1(1) ------>AtLEC2  --------->ANAC58                           <---------ANAC46  --------->ANAC58 -----ANAC58    --------->ANAC46                --------->At4g35610    <-----------HVH21 <---------HSFB2a(1) -----AtSPL8<---------HSFB2a(2)   <-------GAMYB <---------At4g35610    --------->At5g28300 -----ANAC58--------->HSFB2a(2)  <---------MYB46(3)   <-----------RAV1(1)    --------->ANAC58 ------>ZmHOX2a(1)   ttgcaacccgctttccagacgcatctctaattcgtctgttatagcccgtctgctatctgttgcatgcatacacggtcacaaggaaatcagaacctcctat  3928000                                                                                        ----------->RAV1(2)                                                                                        =============                                                                                        --------->O2                                                                                        --------->ZAT2                                                                                        <---------ZAT2                                                                                        =============                         xxxxxxxxxxxxxxxxxxxxxxx>smallRNA(si3)                          --------->TGA1a                         xxxxxxxxxxxxxxxxxxxxxxx>smallRNA(se3)                          <---------TGA1a                   *TSS  xxxxxxxxxxxxxxxxxxxxxxx>smallRNA(s2)                           <---------O2               --------->At5g28300                          <-----------GT1           <---------ALFIN1              ----------->GT1                          <---------ANAC58          --------->DAG2            <---------------------WRI1                 <---------ANAC58         ---------->DOF2  ----          --------->MYB46(3)             ----------->GT1<---------TOE1(2)       ==================bZIP_DOF   taaacgataacatcgaccgtaaaatcaatggagttagtgaagatggtttcaagcttcgcttgtttccattctcacttggagataaagcccacctgtggga  3928100                                  --------->ATHB12                           --------->TOE1(2)                       --------->ANAC58                     <---------ICU4           --------->LBD16--------->ZAT2          <---------LBD16 ----------->RAV1(2)          <-----------RAV1(2)    <---------YAB1      -------->P     --------->YAB1  --------->ANAC58  <---------ATHB12       --------->DAG2                                 <---------LBD16  --------->ANAC58xxxxxxxxxxxxxxxx>smallRNA(i)                                 --------->RAP2.6(3)  --------->ANAC46--------->WOX13(1)<---------WOX13(1)                        <------ZmHOX2a(1)     - =======bZIP_DOF<------ZmHOX2a(2)--------->ICU4                             --------->LBD16         < ==============MYC_MYB --------->ANAC58   ---------->DOF2                  xxxxxxxxxxxxxxxx>smallRNA(i) ------>DOF2   xxxxxxxxxxxxxxxxxxxxxxx>smallRNA(fl3)               --------->HSFB2a(2)  --------->GLK1(2)   aaagacgctaccccagggatcaatcacgacctgggatgattgcaaaaaggccttcttggcaaaattcttctccaactccaggactgcaagactctggaat  3928200                                                                                                   <-                                                                                                  ---                                                                                                  ---                 --------->At4g35610                                                          -------               --------->YAB1                                                         <---------ANAC55(2)        --------->ARR14(2)                                                            --------->ANAC58        <---------ARR14(2)                                               ------>MYB46(1)      -------        <---------GLK1(2)                                                ---------->DOF2 <-----------ARR10      --------->LBD16                                              <xxxxxxxxxxxxxxxxxxxxxxsmallRNA(si3)    <---------LBD16                                       <---------TOE1(3)        <---------REM1(2)  --------->ARR14(2)                                      <---------TOE2(3)       <-----------HVH21--  <---------ARR14(2)                                  <----------DOF2    ------>MYB83 --------->ANAC58 --------->CCA1(2)                               xxxxxxxxxxxxxxxxxxxxxxx>smallRNA(fl3)--------->ANAC55(2) --------->GLK1(1)                         <---------ANAC58      <---------YAB1   <xxxxxxxxxxxxxxxxxx <---------GLK1(1)                --------->AHL20(2)  <---------DAG2 >>>>>>>>>>MYB80 <---------LBD16 -------->ARR11(3) --------->ANAC58        <---------ANAC58   xxxxxxxxxxxxxxxxxxxxxxxx>smallRNA(si3)< ---------ARR11(3) --------->ANAC58      ------->TEILxxxxxxxxxxxxxxxxxxxxxxx>smallRNA(si3)    -------   gagatatccggattcactcagaagcaaaatgaaagattatatgaagcttgggagcgctttaagggttatcaaaccaaatgccctcatcacggatttaagc  3928300                            <---------ANAC58              <---------ZAT18             <---------ALFIN1 <xxxxxxxxxxxxxxxxxxxxxxxsmallRNA(si3) --------HSFC1(2)           <---------ANAC58           ----------->HVH21 ------>ANAC58--------->ZAT14                        <---------ANAC58 ------>ANAC58<---------ZAT14 <------NtERF2          <---------ANAC58 -->ANAC58  <---------At4g35610                  <---------At4g35610 -->ANAC46  --------->At4g35610               <------ZmHOX2a(1) ------->HSFC1(2)--------->ANAC58         --------->CCA1(2) xxxxxsmallRNA(si3)         <---------ANAC46<---------TOE2(3)                             --------->ARR11(3) ---------GLK1(2)--------->ANAC58       --------->YAB1<---------WOX13(1)     <---------AHL20(2) -->ANAC58  --------->ZAT2 xxxxxxxxxxxxxxxxxxxxxxx>smallRNA(se3)--------------->AGL15    <------ZmHOX2a(1)   aagcttctcttctcagcacactctatagaggcgtcttgcctaagataaggatgctgcttgacaccgcttcaaatgggaattttttgaagaaggatgttga  3928400                                                                                 ----------->HVH21                                                                              <---------ARR14(2)                                                                        --------->ANAC58                                                                        <---------ALFIN1                                                                        --------->ANAC58            -                                           --------->YAB1<---------YAB1 --------->ANAC46            <                                        --------->WOX13(1)         --------->ARR14(2)             ---                                     ----------->GT1     ----------->HVH21    --------->ARR14(2)-----         <---------At4g35610      <-------GAMYB  --------->YAB1  <---------HSFC1(2)            ------         <---------ZAT2         <xxxxxxxxxxxxxxxxxxxxxsmallRNA(i2) <---------ARR14(2)          ------  <------ZmHOX2a(1)           <-----------HVH21 <---------ATHB12 --------->HSFC1(2)     --------->YAB1   agaaggatgggagctagttgaaaacgtttctcagtcggatggcaattacaatgaagactatgacagaagtatccacaccagttctgacactgatgacaag  3928500  Previous    Next  AGI:  At2g10250.1    Description:  transposable element gene. gypsy-like retrotransposon family (Athila), has a 2.0e-157 P-value blast match to GB:CAA57397 Athila ORF 1 (Arabidopsis thaliana) Range:  from: 3928019    to: 3932931    Orientation: Forward Links:  TAIR  MIPS      Please cite the corresponding publications when using AthaMap.
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