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Chromosome 1
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Chromosome 5
Position
Exon region
Intron region
UTR region
AGI
% Restriction to highly conserved TF binding sites (0-100)
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1 10 20 30 40 50 60 70 80 90 100
<---------
ANAC58
------>
MYB83
<---------
AtLEC2
--------->
At4g35610
----------->
GT1
<---------
ANAC58
----------->
RAV1(2)
<------
ZmHOX2a(1)
<---------
ANAC46
<----------
DOF2
-------->
ZAT18
------>
ZmHOX2a(1)
--------->
ATHB12
--------->
ARR14(2)
------>
MYB46(1)
<------
---------
ZAT14
--------->
TOE2(3)
<---------
YAB1
<---------
ICU4
<---------
At4g35610
------->
AtMYB61
<---------
ALFIN1
<-----------
GT1
<---------
YAB1
<-----------
GT1
-------
-
TOE2(3)
<xxxxxxxxxxxxxxxx
smallRNA(s)
<---------
WOX13(1)
<xxxxxxxxxxxxxxxxxxxxxxx
smallRNA(i2)
<
accacactattggattaccccatccttaggaatcgtttatccatttgattgcatgttatcatttctgctttgttattcacctgcctgctattgccatttc
3927600
------>
MYB83
-------->
P
------->
GAMYB
--------->
AtMYB61
<---------
MYB52(2)
<---------
MYB55(2)
--------->
MYB46(3)
--------->
ANAC58
--------->
ANAC58
------>
MYB46(1)
------>
MYB83
<---------
ARR11(3)
-------->
P
<---------
ANAC46
--------->
ARR11(3)
<XXXXXXXXXXXXXXXXXXXX
MIR1886.1
--------->
AtMYB61
<---------
--------->
AHL20(2)
--------->
MYB46(3)
<---------
WOX13(1)
<---------
CCA1(2)
<---------
AHL20(2)
<-----------
GT1
<---------
AtLEC2
xxxxxxxxxxxx
---
ARR14(2)
<---------
AHL20(2)
--------->
ZAT2
--------->
YAB1
-->
ARR14(2)
<------
ZmHOX2a(1)
------>
MYB46(1)
<xxxxxxxxxxxxxxxxxxxx
smallRNA(le3)
----------
DOF2
<---------
MYB52(1)
--------->
YAB1
<---------
ZAT2
<----------
DOF2
<---
tgcttttaatttcatttcatttctgttattgcatactaggactattaaaaccaaccaactctctgcttggattgacttagagctttctgatcatatctca
3927700
<
-
<
<-
<---------
ZAT6
--------
<---------
WOX13(1)
<---------
ARR14(2)
-------------
<---------
ARR14(2)
------->
GAMYB
<---------
TOE2(3)
------>
ZmHOX2a(1)
<-
--------->
LBD16
------>
ZmHOX2a(1)
--------->
ARR14(2)
<---------
WOX13(1)
=============
<---------
LBD16
--------->
TOE2(3)
<------
ZmHOX2a(1)
--------->
ATHB12
--------------
--
ARR10
--------->
MYB52(1)
<xxxxxxxxxxxxxxxxxxxxxxx
smallRNA(le3)
--------->
AHL20(2)
<-------------
xxxxxxxxxxx>
smallRNA(le3)
<xxxxxxxxxxxxxxxxxxxxxxx
smallRNA(fl3)
<---------
AHL20(2)
<-------------
------
At4g35610
--------->
ARR14(2)
--------->
MYB46(3)
<------
ZmHOX2a(1)
--------->
TOE1(2)
--
tctgtttgcatcataccggattggattgacatcctaaaatactacaacgacaggatagtgttttaggattaattgactaaaatcctactaccaatttggg
3927800
<---------
ANAC58
<---------
ANAC58
<---------
ANAC46
<---------
MYB52(1)
<xxxxxxxxxxxxxxxxxxxxxxx
smallRNA(fl3)
xxxxxxxxxxxxxxxxxxxxxxx>
smallRNA(i2)
-------
GAMYB
-------->
At4g35610
--------->
TOE2(3)
---------
At4g35610
--------->
TOE1(3)
----------
RAV1(1)
--------->
ATHB12
->
ALFIN1
<------
MYB46(1)
--------->
ICU4
-->
AGL15
<------
MYB83
<------
ZmHOX2a(2)
<---------------
AtSPL8
--------
MYB46(3)
<-----------------
AGL3
----------->
GT1
--------------->
AtSPL8
---
========================================
MADS_MADS
<-----------
RAV1(1)
<----
--->
AGL1
--------->
MYB111(2)
<---------
YAB1
<-------
TEIL
<----------
----
AGL1
<---------
AtMYB61
--------->
ARR11(3)
<---------
ARR11(3)
<-----------
RAV1(2)
----
AGL2
--------->
MYB46(2)
<---------
ARR11(3)
--------->
ARR11(3)
<----------
DOF2
<----
------->
ALFIN1
<xxxxxxxxxxxxxxxxxxxxxxx
smallRNA(le3)
<------
ZmHOX2a(2)
--------->
ANAC46
<---------
At4g35610
gctgttgccagtttggtgtttgtttgctatatttgagatcattagaaacgttaagatcaagttcatttttgttgtacaagttactttggtttcaggtacc
3927900
--------->
HSFB2a(1)
--------->
HSFC1(2)
<---------
HSFC1(2)
<---------
GLK1(2)
<---------
REM1(2)
<---------
ARR14(2)
<xxxxxxxxxxxxxxxxxxxxx
smallRNA(fl3)
--------->
AtLEC2
--------->
ARR14(2)
<---------
CCA1(2)
xxxxxxxxxxxxxxxxxxxxx>
smallRNA(i2)
<----------
DOF2
<---------
ANAC46
--------->
YAB1
------->
GAMYB
------->
TEIL
<---------
ANAC58
--------->
GLK1(1)
-------->
P
--------->
ANAC58
<---------
AtLEC2
<---------
GLK1(1)
------>
AtLEC2
--------->
ANAC58
<---------
ANAC58
--------->
ANAC58
-----
ANAC58
--------->
ANAC46
--------->
At4g35610
<-----------
HVH21
<---------
HSFB2a(1)
-----
AtSPL8
<---------
HSFB2a(2)
<-------
GAMYB
<---------
At4g35610
--------->
At5g28300
-----
ANAC58
--------->
HSFB2a(2)
<---------
MYB46(3)
<-----------
RAV1(1)
--------->
ANAC58
------>
ZmHOX2a(1)
ttgcaacccgctttccagacgcatctctaattcgtctgttatagcccgtctgctatctgttgcatgcatacacggtcacaaggaaatcagaacctcctat
3928000
--------->
ZAT2
=============
<---------
ZAT2
--------->
O2
--------->
TGA1a
<---------
O2
xxxxxxxxxxxxxxxxxxxxxxx>
smallRNA(si3)
=============
xxxxxxxxxxxxxxxxxxxxxxx>
smallRNA(se3)
----------->
RAV1(2)
*
TSS
xxxxxxxxxxxxxxxxxxxxxxx>
smallRNA(s2)
<---------
TGA1a
--------->
At5g28300
<-----------
GT1
<---------
ALFIN1
----------->
GT1
<---------
ANAC58
--------->
DAG2
<---------------------
WRI1
<---------
ANAC58
---------->
DOF2
----
--------->
MYB46(3)
----------->
GT1
<---------
TOE1(2)
==================
bZIP_DOF
taaacgataacatcgacc
gtaaaatcaatggagttagtgaagatggtttcaagcttcgcttgtttccattctcacttggagataaagcccacctgtggga
3928100
--------->
ATHB12
--------->
TOE1(2)
--------->
ANAC58
<---------
ICU4
--------->
LBD16
--------->
ZAT2
<---------
LBD16
----------->
RAV1(2)
<-----------
RAV1(2)
<---------
YAB1
-------->
P
--------->
YAB1
--------->
ANAC58
<---------
ATHB12
--------->
DAG2
<---------
LBD16
--------->
ANAC58
--------->
WOX13(1)
<---------
WOX13(1)
--------->
RAP2.6(3)
--------->
ANAC46
xxxxxxxxxxxxxxxx>
smallRNA(i)
<------
ZmHOX2a(1)
<
==============
MYC_MYB
--------->
ANAC58
---------->
DOF2
--------->
LBD16
-
=======
bZIP_DOF
<------
ZmHOX2a(2)
--------->
ICU4
xxxxxxxxxxxxxxxx>
smallRNA(i)
------>
DOF2
xxxxxxxxxxxxxxxxxxxxxxx>
smallRNA(fl3)
--------->
HSFB2a(2)
--------->
GLK1(2)
aaagacgctaccccagggatcaatcacgacctgggatgattgcaaaaaggccttcttggcaaaattcttctccaactccaggactgcaagactctggaat
3928200
<-
---
---
--------->
At4g35610
-------
--------->
YAB1
--------->
ANAC55(2)
<---------
ARR14(2)
--------->
ANAC58
--------->
ARR14(2)
------>
MYB83
--------->
ANAC58
<---------
GLK1(2)
------>
MYB46(1)
-------
--------->
LBD16
<xxxxxxxxxxxxxxxxxxxxxx
smallRNA(si3)
<---------
LBD16
<---------
TOE1(3)
<---------
REM1(2)
--------->
ARR14(2)
<---------
TOE2(3)
<xxxxxxxxxxxxxxxxxx
<---------
ARR14(2)
<---------
DAG2
---------->
DOF2
<-----------
ARR10
<---------
GLK1(1)
xxxxxxxxxxxxxxxxxxxxxxx>
smallRNA(fl3)
<---------
ANAC55(2)
--------->
CCA1(2)
<---------
ANAC58
<---------
YAB1
<-----------
HVH21
--
--------->
GLK1(1)
--------->
AHL20(2)
<----------
DOF2
>>>>>>>>>>
MYB80
<---------
LBD16
---------
ARR11(3)
--------->
ANAC58
<---------
ANAC58
xxxxxxxxxxxxxxxxxxxxxxxx>
smallRNA(si3)
<
-------->
ARR11(3)
--------->
ANAC58
------->
TEIL
xxxxxxxxxxxxxxxxxxxxxxx>
smallRNA(si3)
-------
gagatatccggattcactcagaagcaaaatgaaagattatatgaagcttgggagcgctttaagggttatcaaaccaaatgccctcatcacggatttaagc
3928300
<---------
ANAC58
<---------
ZAT14
<---------
ALFIN1
<xxxxxxxxxxxxxxxxxxxxxxx
smallRNA(si3)
--------
HSFC1(2)
<---------
ANAC46
----------->
HVH21
------>
ANAC58
--------->
ZAT14
<---------
ANAC58
------>
ANAC58
<---------
ZAT18
<------
NtERF2
<---------
ANAC58
-->
ANAC46
--------->
At4g35610
<---------
At4g35610
-->
ANAC58
<---------
At4g35610
<------
ZmHOX2a(1)
xxxxx
smallRNA(si3)
<---------
ANAC58
<---------
TOE2(3)
------->
HSFC1(2)
--------->
ANAC58
--------->
CCA1(2)
--------->
ARR11(3)
---------
GLK1(2)
--------->
ANAC58
--------->
YAB1
<---------
WOX13(1)
<---------
AHL20(2)
-->
ANAC58
--------->
ZAT2
xxxxxxxxxxxxxxxxxxxxxxx>
smallRNA(se3)
--------------->
AGL15
<------
ZmHOX2a(1)
aagcttctcttctcagcacactctatagaggcgtcttgcctaagataaggatgctgcttgacaccgcttcaaatgggaattttttgaagaaggatgttga
3928400
----------->
HVH21
<---------
ARR14(2)
--------->
ANAC58
<---------
ALFIN1
--------->
ANAC58
-
--------->
YAB1
<---------
YAB1
--------->
ANAC46
<
--------->
WOX13(1)
--------->
ARR14(2)
---
----------->
GT1
----------->
HVH21
--------->
ARR14(2)
-----
<---------
At4g35610
<-------
GAMYB
--------->
YAB1
<---------
HSFC1(2)
------
<---------
ZAT2
<xxxxxxxxxxxxxxxxxxxxx
smallRNA(i2)
<---------
ARR14(2)
------
<------
ZmHOX2a(1)
<-----------
HVH21
<---------
ATHB12
--------->
HSFC1(2)
--------->
YAB1
agaaggatgggagctagttgaaaacgtttctcagtcggatggcaattacaatgaagactatgacagaagtatccacaccagttctgacactgatgacaag
3928500
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AGI:
At2g10250.1
Description:
transposable element gene. gypsy-like retrotransposon family (Athila), has a 2.0e-157 P-value blast match to GB:CAA57397 Athila ORF 1 (Arabidopsis thaliana)
Range:
from: 3928019
to: 3932931
Orientation: Forward
Links:
TAIR
MIPS
Please cite the corresponding
publications
when using AthaMap.