Home Tools   - Search   - Colocalization   - Gene Analysis   - Gene Identification   - Small RNA Targets   - MicroRNA Targets Description Documentation Citations Downloads Publications History Contact Links Disclaimer	Search   Chromosome 1 Chromosome 2 Chromosome 3 Chromosome 4 Chromosome 5    Position Exon region Intron region UTR region AGI % Restriction to highly conserved TF binding sites (0-100)   Go to graphical and table display  1        10        20        30        40        50        60        70        80        90        100                                                                              <xxxxxxxxxxxxxxxxxxxxxxxsmallRNA(se3)                                                                           <---------ANAC58                                                                           xxxxxxxxxxxxxxxxxxxxxxx>smallRNA(i2)                                                                    xxxxxxxxxxxxxxxxxxxx>smallRNA(le3)                                                                    xxxxxxxxxxxxxxxxxxxx>smallRNA(si3)                                                                 ----------------->AGL3                                                                 xxxxxxxxxxxxxxxxxxxxxxx>smallRNA(si3)                                                          <---------ZAT6   <---------ANAC58                                                        ----------->GT1  xxxxxxxxxxxxxxxxxxxxxx>smallRNA(le3)                                                        --------->YAB1 <xxxxxxxxxxxxxxxxxxxxxxsmallRNA(l2)                           ----------->GT1           xxxxxxxxxxxxxxxxxxxxxxx>smallRNA(i2)                          --------->DAG2             xxxxxxxxxxxxxxxxxxxxxx>smallRNA(si3)                        ---------->DOF2             xxxxxxxxxxxxxxxxxxxxxxx>smallRNA(i2)                     --------->AHL20(2)     xxxxxxxxxxxxxxxxxxxxxxx>smallRNA(i2)<-----------GT1    -- -----AHL20(2)      --------->AHL20(2)      xxxxxxxxxxxxxxxxxxxxxx>smallRNA(l2)xxxxxxxxxxxxxxxxxxxxxx   aattttagggacttaaatgcaaataaaaaaggtgaaacttcaaatttagagtattgaatagtgatactccaaatatagagtgtcactattcaatactcta  3175100                              --------->TOE1(3)                              --------->TOE2(3)                           ===========================                              <---------MYB59                             <---------------AGL15xxxxxx                        --------->HSFB2a(2)                          <---------GLK1(1)         ------                --------->GLK1(2)                                    <---------At4g35610       <-----                <---------ARR11(3)                         <---------ARR11(3)           xxxxxxxxxxxxx                --------->ARR14(2)                         --------->ARR14(2)          xxxxxxxxxxxxxx        --------->MYB52(1)  --------->GLK1(2)              <---------ARR14(2)          --------->MYB46(3) ------->ICU4   <---------ARR14(2)       <---------YAB1    --------->ARR11(3)        --------->MYB52(1) >smallRNA(si3) --------->ARR11(3)   <----------DOF2       --------->GLK1(2)      --------->At4g35610   aattatgaagtaatggagtatctcttggagaacctaaaactttatatttgaggggatagagtatctcttggagatgctctaagaagctaacaaatggcgc  3175200               <-----------HVH21             <-------MYC3             ------->MYC3           <-------MYC4           <-------MYC3           <-------MYC2           ------->MYC3           ------->MYC2                                                               --------->ARR11(3)       <---------ZAT18                                                                --------->GLK1(2)   <xxxxxxxxxxxxxxxxxxxxxxsmallRNA(i2)      --------->AHL20(2)                       --------->RVE1(1)   <---------ICU4              --------->AHL20(2)                              --------->AHL20(2)   --------->ATHB12            <---------AHL20(2)                              --------->YAB1 ============================================================================MADS_MADS<---------ARR11(3) xxxxxxxxxxxxxxxxx>smallRNA(si3)<---------AHL20(2)           --------------->AGL15   --------->CCA1(1) --->ZAT18xxxxxxxxxxxxxxxxxxxxxxx>smallRNA(si3)              <---------------AGL15 --------->AHL20(2) ----ZAT18xxxxxxxxxxxxxxxxxxxxxxx>smallRNA(le3)        <----------DOF2      --------->YAB1 xxxxxxx>smallRNA(fl3)         --------->AHL20(1)   <-----------GT1        <---------YAB1 xxxxxxxx>smallRNA(le3)------>ZmHOX2a(1)    <---------AHL20(2)           --------->YAB1--------->RVE1(1)   tctattcattgcacatgtgtcattcctctcaaatttaatacactatttttatattcactttgtctaaatatagttttataataaaaaaaatctcttaaca  3175300                        --------->AHL20(2)                        <---------ICU4                        --------->ATHB51                        <---------AHL20(2)                    <---------AHL20(1)                                                           <---                    --------->AHL20(2)                                --------->YAB1             ----                    --------->AHL20(1)                                --------->TOE1(3)         <----                    <---------AHL20(2)                    <-------TEIL--------->TOE2(3)         -----                 --------->YAB1     <---------ICU4    --------->ARR14(2)                       <-----                <---------AHL20(2) --------->ICU4 --------->ZAT6     <---------YAB1            ------                <---------YAB1     <---------ATHB12   <---------ARR14(2)         <---------GLK1(2)              --------->YAB1     --------->YAB1  <---------YAB1    <-----------GT1        --------->At4g35610           <----------DOF2<---------YAB1        <-----------GT1 <xxxxxxxxxxxxxxxxxxxxxxsmallRNA(si3)       <---------ZAT18 --------->ICU4    ------->TEIL <---------ARR11(3) --------->YAB1   <---------At4g35610   tttttgcaatgcccttttataattaattatttttctaataatgtatcatttatcagtatattcatatagttaccataacaatagaatttctcagcaaaat  3175400                       --------->ATHB51                       -------->ATHB1                       --------->ATHB12                       <---------ICU4            ---------->DOF2           --------->AHL20(2)       <------ZmHOX2a(1) <---------YAB1     --------->LBD16  <---------ATHB51     <---------TOE1(2)--------->ICU4                      --------->AHL20(2)    <---------LBD16   --------->AHL20(2)                 --------->AHL20(2)                   <------   <---------LBD16    <---------AHL20(2)                 <---------AHL20(2)                  -------- ------ICU4<---------AHL20(2)      <-----------GT1       <---------ATHB12                    <------- ----->AHL20(2)    --------->AHL20(1)                    <---------ATHB51                   --------- -----AHL20(2)     <---------AHL20(1)      --------->ANAC46                                 --------- ---->AHL20(2)     --------->AHL20(2)      --------->ANAC58                       <---------TOE2(3) ----AHL20(1)      <---------AHL20(2)      --------->ANAC58                     ---------->DOF2 --->AHL20(2)     --------->AHL20(2)  <----------DOF2--------->AHL20(2)--------->YAB1      *TSS   aatttcccaggaattaaagaataaattattagttttataactttcaagccaaaaatcaaataatttttctctaacataagtttaaaggaaatgagacgta  3175500           --------->KAN4(2)          --------->KAN4(1)          <---------KAN4(1)          <----------TaMYB80          <---------GLK1(1)          --------->GLK1(1)         --------->ARR14(2)         <---------ARR14(2)         <---------ARR11(3)       --------->LBD16      <---------ANAC46                                                          --------->TOE2(3)  <-      <---------HSFB2a(2)                        --------->ANAC55(2)     --------->MYB59           --      --------->HSFB2a(2)                        <---------ANAC55(2) <---------MYB46(3)            --     <---------LBD16                   <---------ZAT14              --------->ICU4            <------ ---SPL7 ---------->TaMYB80         --------->GLK1(1)               <---------ATHB12    <-------TEIL< ->ANAC55(2)                       <---------ARR11(3)             xxxxxxxxxxxxxxxxxxxxxxx>smallRNA(i2) --ANAC55(2)--------->GLK1(2)      --------->ARR11(3)          --------->ANAC58 --------->YAB1<------ ------>AtSPL8             <----------ID1  <---------ATHB12    --------->ANAC58<---------YAB1 <------ ------>AtSPL3       ------>ZmHOX2a(1) --------->ZAT14  ---------->DOF2<---------MYB52(1)  <---------CCA1(2)   ctcattttccggatattctgttcctcatggagacgaagaactccagtgattacatactgaaagttaagcaatggttaggctacgataatgttcatatcgt  3175600         --------->ZAT18   ------>ZmHOX2a(1) ------>ZmHOX2a(2) --------ARR14(2) ------->ARR14(2)                                                          ---------->DOF2 ------->ARR11(3)      --------->ANAC58                          -------->ATHB1                 <---- ---ANAC46             --------->ANAC58                          --------->ATHB12            -------- ------ZmHOX2a(2)    ---------->DOF2                             <---------ICU4              ------>ZmHOX2a(1) ---ANAC58        <---------HSFB2a(2)       --------->ZAT18     <---------YAB1    <---------TOE2(3) ---ANAC58        --------->HSFB2a(2)      --------->ALFIN1    --------->GLK1(2)  <---------TOE1(3)   ggatcctgaagggcattgttttggaaagcatcatatgaagttgaagtgctccgctcggacaagagaatcattgatacaaaagttaagcttgggtccttat  3175700                             <---------ZAT2                             --------->ZAT2                                                 ------>ZmHOX2a(2)                         <------ZmHOX2a(2)                                              --------->HSFB2a(1)                        <---------ARR14(2)                                              --------->KAN4(1)                        --------->ARR11(3)                                              --------->ICU4                        --------->ARR14(2)                            --------->ATHB51  <---------HSFB2a(1)                        <---------ARR11(3)                            --------->ATHB12  <---------KAN4(1)                        --------->AGP1                               xxxxxxxxxxxxxxxxxxxxxxx>smallRNA(si3)                       --------->GLK1(1)                        <-----------GT1    --------->ANAC58 - -----TOE1(3)          <---------GLK1(1)                      --------->AHL20(2)   --------->ANAC58 < ->ICU4  --------->ATHB12--------->CCA1(2)      <---------ARR11(3)--------->MYB46(3)   <---------KAN4(2)   ggttttttgcttcatttgtttatggagatccagcttggcatttaagacaagatgtatgggacaatttaacaactattggtttagcaaggaatgatccatg  3175800                                                   <---------PCF2                                                  ----------->TCP11(1)       <-----------GT1                                                  <---------TCP16(2)     <----------DOF2                                              <---------ANAC46          --------->TOE2(3)                                              <------MYB83         <---------HSFB2a(1)                                              <------MYB46(1)      <---------HSFC1(2)                                              <---------ANAC58     --------->HSFC1(2)                                              <---------ANAC58     --------->HSFB2a(1)          ------>NtERF2--------->CCA1(2)     --------->MYB111(2)  <---------ARR14(2)         ----------->HVH21                   --------->MYB111(1)  --------->GLK1(2)        --------->ATERF1(1)                  --------->MYB55(2)   --------->ARR14(2)   <---------REM1(1)  --------->ARR11(1)     --------->MYB46(2)   <-----------ARR10 <-------GAMYB        <---------ARR14(2)     <---------MYB46(3)   --------->ARR11(3) -------->MYB52(2)    --------->ARR11(3)     <---------AtMYB61    <---------ARR11(3) ---------MYB46(3)  ----------->ARR10  ---------->DOF2           <---------GLK1(2)      ----------->RAV1(1)   gtttgttgtaggcgacctgaatgagatatgggataactctgaaaagtttggtgggcctggtcgtgaagaatcttcctttattccatttcgcaacatggta  3175900                                                         --------->ANAC46                                                   <------NtERF2                                           <---------O2  --------->ANAC58                                    --------->AHL20(2)<---------ARR14(2)                       --------------->AGL15      ----------->GT1                       <----------DOF2     <---------ANAC46   ----------->HVH21                       <---------------AGL15      <---------MYB46(3)              ----------->HVH21     <---------AHL20(1)<---------WRKY12        <---------ARR14(2)             <-----------HVH21      <---------AHL20(2)<---------WRKY38(1)     --------->ARR14(2)             --------->LBD16  ----------->GT1    <---------ANAC46         ------>ZmHOX2a(2)            --------->ANAC46 --------->HSFB2a(2) <---------ANAC58       <---------ARR14(2)    <------        --------->ATERF1(1)  <---------HSFB2a(2) <---------ANAC58   <-------MYC3              -------      <---------ANAC58 <---------DAG2 <---------GLK1(2)  --------->ANAC58<------ZmHOX2a(2) --------->DAG2      <---------ANAC58<-----------------AGL3  <---------DEAR3(1)    ------->MYC3          =========== <---------GLK1(2)    <---------DAG2--------->AHL20(1)--------->ARR14(2)--------->ARR14(2)---------->DOF2   caagattgtcgtctccgtgacatacctttttctggtaataaattctcgtgggcgggtaaacgcaatgacatgtggatccaaatccgattggataaagctc  3176000  Previous    Next  AGI:  At2g07570.1    Description:  transposable element gene. non-LTR retrotransposon family (LINE), has a 1.2e-16 P-value blast match to GB:NP_038603 L1 repeat, Tf subfamily, member 23 (LINE-element) (Mus musculus) Range:  from: 3175491    to: 3179514    Orientation: Forward Links:  TAIR  MIPS      Please cite the corresponding publications when using AthaMap.
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