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Chromosome 1
Chromosome 2
Chromosome 3
Chromosome 4
Chromosome 5
Position
Exon region
Intron region
UTR region
AGI
% Restriction to highly conserved TF binding sites (0-100)
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1 10 20 30 40 50 60 70 80 90 100
<xxxxxxxxxxxxxxxxxxxxxxx
smallRNA(se3)
<---------
ANAC58
xxxxxxxxxxxxxxxxxxxxxxx>
smallRNA(i2)
xxxxxxxxxxxxxxxxxxxx>
smallRNA(le3)
xxxxxxxxxxxxxxxxxxxx>
smallRNA(si3)
xxxxxxxxxxxxxxxxxxxxxxx>
smallRNA(si3)
----------------->
AGL3
<---------
ZAT6
<---------
ANAC58
----------->
GT1
xxxxxxxxxxxxxxxxxxxxxx>
smallRNA(le3)
--------->
YAB1
<xxxxxxxxxxxxxxxxxxxxxx
smallRNA(l2)
----------->
GT1
xxxxxxxxxxxxxxxxxxxxxx>
smallRNA(si3)
--------->
DAG2
xxxxxxxxxxxxxxxxxxxxxxx>
smallRNA(i2)
---------->
DOF2
xxxxxxxxxxxxxxxxxxxxxxx>
smallRNA(i2)
--------->
AHL20(2)
xxxxxxxxxxxxxxxxxxxxxxx>
smallRNA(i2)
<-----------
GT1
--
-----
AHL20(2)
--------->
AHL20(2)
xxxxxxxxxxxxxxxxxxxxxx>
smallRNA(l2)
xxxxxxxxxxxxxxxxxxxxxx
aattttagggacttaaatgcaaataaaaaaggtgaaacttcaaatttagagtattgaatagtgatactccaaatatagagtgtcactattcaatactcta
3175100
--------->
TOE2(3)
--------->
TOE1(3)
===========================
<---------
MYB59
<---------------
AGL15
------
--------->
HSFB2a(2)
<---------
At4g35610
<-----
--------->
GLK1(2)
<---------
GLK1(1)
xxxxxx
<---------
ARR11(3)
<---------
ARR14(2)
xxxxxxxxxxxxx
--------->
ARR14(2)
--------->
ARR14(2)
--------->
MYB46(3)
--------->
MYB52(1)
--------->
GLK1(2)
--------->
ARR11(3)
xxxxxxxxxxxxxx
------->
ICU4
<---------
ARR14(2)
<---------
YAB1
--------->
GLK1(2)
--------->
MYB52(1)
>
smallRNA(si3)
--------->
ARR11(3)
<----------
DOF2
<---------
ARR11(3)
--------->
At4g35610
aattatgaagtaatggagtatctcttggagaacctaaaactttatatttgaggggatagagtatctcttggagatgctctaagaagctaacaaatggcgc
3175200
<-----------
HVH21
------->
MYC3
<-------
MYC3
<-------
MYC3
------->
MYC3
<-------
MYC2
<-------
MYC4
------->
MYC2
--------->
ARR11(3)
<---------
ZAT18
--------->
GLK1(2)
<---------
ICU4
<---------
AHL20(2)
--------->
RVE1(1)
<xxxxxxxxxxxxxxxxxxxxxx
smallRNA(i2)
--------->
AHL20(2)
--------->
AHL20(2)
--------->
ATHB12
--------->
AHL20(2)
--------->
YAB1
============================================================================
MADS_MADS
<---------
ARR11(3)
--->
ZAT18
xxxxxxxxxxxxxxxxxxxxxxx>
smallRNA(le3)
--------------->
AGL15
--------->
CCA1(1)
----
ZAT18
xxxxxxxxxxxxxxxxxxxxxxx>
smallRNA(si3)
<---------------
AGL15
--------->
AHL20(2)
xxxxxxxxxxxxxxxxx>
smallRNA(si3)
<---------
AHL20(2)
<----------
DOF2
--------->
YAB1
xxxxxxx>
smallRNA(fl3)
--------->
AHL20(1)
<-----------
GT1
<---------
YAB1
xxxxxxxx>
smallRNA(le3)
------>
ZmHOX2a(1)
<---------
AHL20(2)
--------->
YAB1
--------->
RVE1(1)
tctattcattgcacatgtgtcattcctctcaaatttaatacactatttttatattcactttgtctaaatatagttttataataaaaaaaatctcttaaca
3175300
--------->
AHL20(2)
<---------
ICU4
--------->
ATHB51
<---------
AHL20(2)
<---------
AHL20(1)
<---
--------->
AHL20(2)
--------->
YAB1
----
--------->
AHL20(1)
--------->
TOE1(3)
<----
<---------
AHL20(2)
<-------
TEIL
--------->
TOE2(3)
-----
--------->
YAB1
<---------
ICU4
--------->
ARR14(2)
<-----
<---------
AHL20(2)
--------->
ICU4
--------->
ZAT6
<---------
YAB1
------
<---------
YAB1
<---------
ATHB12
<---------
ARR14(2)
<---------
GLK1(2)
--------->
YAB1
--------->
YAB1
<---------
YAB1
<-----------
GT1
--------->
At4g35610
<----------
DOF2
<---------
YAB1
<-----------
GT1
<xxxxxxxxxxxxxxxxxxxxxx
smallRNA(si3)
<---------
ZAT18
--------->
ICU4
------->
TEIL
<---------
ARR11(3)
--------->
YAB1
<---------
At4g35610
tttttgcaatgcccttttataattaattatttttctaataatgtatcatttatcagtatattcatatagttaccataacaatagaatttctcagcaaaat
3175400
--------->
ATHB51
-------->
ATHB1
--------->
ATHB12
<---------
ICU4
---------->
DOF2
--------->
AHL20(2)
<------
ZmHOX2a(1)
<---------
YAB1
--------->
LBD16
<---------
ATHB51
<---------
TOE1(2)
--------->
ICU4
--------->
AHL20(2)
<---------
LBD16
--------->
AHL20(2)
--------->
AHL20(2)
<------
<---------
LBD16
<---------
AHL20(2)
<---------
AHL20(2)
--------
------
ICU4
<---------
AHL20(2)
<-----------
GT1
<---------
ATHB12
<-------
----->
AHL20(2)
--------->
AHL20(1)
<---------
ATHB51
---------
-----
AHL20(2)
<---------
AHL20(1)
--------->
ANAC46
---------
---->
AHL20(2)
--------->
AHL20(2)
--------->
ANAC58
<---------
TOE2(3)
----
AHL20(1)
<---------
AHL20(2)
--------->
ANAC58
---------->
DOF2
--->
AHL20(2)
--------->
AHL20(2)
<----------
DOF2
--------->
AHL20(2)
--------->
YAB1
*
TSS
aatttcccaggaattaaagaataaattattagttttataactttcaagccaaaaatcaaataatttttctctaacataagtttaaaggaa
atgagacgta
3175500
--------->
KAN4(2)
--------->
KAN4(1)
<---------
KAN4(1)
<----------
TaMYB80
<---------
GLK1(1)
--------->
GLK1(1)
--------->
ARR14(2)
<---------
ARR14(2)
<---------
ARR11(3)
--------->
LBD16
<---------
ANAC46
--------->
TOE2(3)
<-
<---------
HSFB2a(2)
--------->
ANAC55(2)
--------->
MYB59
--
--------->
HSFB2a(2)
<---------
ANAC55(2)
<---------
MYB46(3)
--
<---------
LBD16
<---------
ZAT14
--------->
ICU4
<------
---
SPL7
---------->
TaMYB80
--------->
GLK1(1)
<---------
ATHB12
<-------
TEIL
<
->
ANAC55(2)
<---------
ARR11(3)
xxxxxxxxxxxxxxxxxxxxxxx>
smallRNA(i2)
--
ANAC55(2)
--------->
GLK1(2)
--------->
ARR11(3)
--------->
ANAC58
--------->
YAB1
<------
------>
AtSPL8
<----------
ID1
<---------
ATHB12
--------->
ANAC58
<---------
YAB1
<------
------>
AtSPL3
------>
ZmHOX2a(1)
--------->
ZAT14
---------->
DOF2
<---------
MYB52(1)
<---------
CCA1(2)
ctcattttccggatattctgttcctcatggagacgaagaactccagtgattacatactgaaagttaagcaatggttaggctacgataatgttcatatcgt
3175600
--------->
ZAT18
------>
ZmHOX2a(1)
------>
ZmHOX2a(2)
--------
ARR14(2)
------->
ARR14(2)
---------->
DOF2
------->
ARR11(3)
--------->
ANAC58
--------->
ATHB12
<----
---
ANAC58
--------->
ANAC58
<---------
ICU4
--------
------
ZmHOX2a(2)
---------->
DOF2
-------->
ATHB1
------>
ZmHOX2a(1)
---
ANAC58
--------->
HSFB2a(2)
--------->
ZAT18
<---------
YAB1
<---------
TOE1(3)
---
ANAC46
<---------
HSFB2a(2)
--------->
ALFIN1
--------->
GLK1(2)
<---------
TOE2(3)
ggatcctgaagggcattgttttggaaagcatcatatgaagttgaagtgctccgctcggacaagagaatcattgatacaaaagttaagcttgggtccttat
3175700
<---------
ZAT2
--------->
ZAT2
------>
ZmHOX2a(2)
<------
ZmHOX2a(2)
<---------
KAN4(1)
<---------
ARR11(3)
<---------
HSFB2a(1)
<---------
ARR14(2)
--------->
KAN4(1)
--------->
ARR11(3)
--------->
ATHB51
--------->
ICU4
--------->
ARR14(2)
--------->
ATHB12
--------->
HSFB2a(1)
--------->
AGP1
xxxxxxxxxxxxxxxxxxxxxxx>
smallRNA(si3)
--------->
GLK1(1)
<-----------
GT1
--------->
ANAC58
-
-----
TOE1(3)
<---------
GLK1(1)
--------->
AHL20(2)
--------->
ANAC58
<
->
ICU4
--------->
ATHB12
--------->
CCA1(2)
<---------
ARR11(3)
--------->
MYB46(3)
<---------
KAN4(2)
ggttttttgcttcatttgtttatggagatccagcttggcatttaagacaagatgtatgggacaatttaacaactattggtttagcaaggaatgatccatg
3175800
<---------
PCF2
<---------
TCP16(2)
<-----------
GT1
----------->
TCP11(1)
<----------
DOF2
<---------
ANAC58
--------->
TOE2(3)
<---------
ANAC46
--------->
HSFC1(2)
<------
MYB46(1)
<---------
HSFC1(2)
<------
MYB83
<---------
HSFB2a(1)
<---------
ANAC58
--------->
HSFB2a(1)
------>
NtERF2
--------->
CCA1(2)
<---------
AtMYB61
<-----------
ARR10
----------->
HVH21
--------->
MYB111(1)
<---------
ARR11(3)
--------->
ATERF1(1)
<---------
MYB46(3)
--------->
GLK1(2)
<---------
REM1(1)
--------->
ARR11(1)
--------->
MYB111(2)
--------->
ARR11(3)
<-------
GAMYB
<---------
ARR14(2)
--------->
MYB55(2)
--------->
ARR14(2)
-------->
MYB52(2)
--------->
ARR11(3)
--------->
MYB46(2)
<---------
ARR14(2)
---------
MYB46(3)
----------->
ARR10
---------->
DOF2
<---------
GLK1(2)
----------->
RAV1(1)
gtttgttgtaggcgacctgaatgagatatgggataactctgaaaagtttggtgggcctggtcgtgaagaatcttcctttattccatttcgcaacatggta
3175900
--------->
ANAC58
<------
NtERF2
<---------
ANAC46
----------->
HVH21
<---------
AHL20(1)
<---------
WRKY38(1)
--------------->
AGL15
<---------
MYB46(3)
<----------
DOF2
<---------
O2
--------->
ANAC58
<---------
DAG2
<---------
GLK1(2)
--------->
ANAC46
----------->
HVH21
--------->
AHL20(1)
--------->
ARR14(2)
<---------
ARR14(2)
<-----------
HVH21
<---------
AHL20(2)
<---------
ARR14(2)
--------->
ARR14(2)
--------->
LBD16
----------->
GT1
----------->
GT1
------>
ZmHOX2a(2)
--------->
ANAC46
--------->
HSFB2a(2)
<---------
ANAC46
<------
ZmHOX2a(2)
-------
--------->
ATERF1(1)
<---------
HSFB2a(2)
<---------
ANAC58
<---------
ARR14(2)
<------
<---------
ANAC58
<---------------
AGL15
<---------
ANAC58
------->
MYC3
--------->
DAG2
<---------
ANAC58
<---------
DAG2
--------->
AHL20(2)
<---------
WRKY12
--------->
ARR14(2)
---------->
DOF2
<---------
GLK1(2)
<-----------------
AGL3
<---------
DEAR3(1)
<-------
MYC3
===========
caagattgtcgtctccgtgacatacctttttctggtaataaattctcgtgggcgggtaaacgcaatgacatgtggatccaaatccgattggataaagctc
3176000
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AGI:
At2g07570.1
Description:
transposable element gene. non-LTR retrotransposon family (LINE), has a 1.2e-16 P-value blast match to GB:NP_038603 L1 repeat, Tf subfamily, member 23 (LINE-element) (Mus musculus)
Range:
from: 3175491
to: 3179514
Orientation: Forward
Links:
TAIR
MIPS
Please cite the corresponding
publications
when using AthaMap.