Home Tools   - Search   - Colocalization   - Gene Analysis   - Gene Identification   - Small RNA Targets   - MicroRNA Targets Description Documentation Citations Downloads Publications History Contact Links Disclaimer	Search   Chromosome 1 Chromosome 2 Chromosome 3 Chromosome 4 Chromosome 5    Position Exon region Intron region UTR region AGI % Restriction to highly conserved TF binding sites (0-100)   Go to graphical and table display  1        10        20        30        40        50        60        70        80        90        100                     ------>ZmHOX2a(2)                 --------->ARR11(3)                 <---------ARR11(3)               <---------YAB1       --------->ZAT2                         <---------GLK1(2)       --------->At4g35610                    --------->ARR14(2)       <---------ZAT2                         <---------ARR14(2)                --------->GLK1(2) --->ZmHOX2a(2) --------->YAB1            <-------TEIL                   --------->GLK1(2)        <-- -->ICU4       <---------ATHB12     <-----------GT1             --------->HSFB2a(2)        <------ZmHOX2a(1) ---YAB1 --------->RAP2.3(3)       --------->AHL20(2)           <---------HSFB2a(2)    ---------->DOF2 >YAB1 <---------At4g35610         <---------AHL20(2)      <----------DOF2     <---------GLK1(2)<----   tcgaaatcgagcagccaatgatcttaaaaactctcaattaaacgttcggattttgattcttctttactggaagagaatttagattctgcaaaaggattga  2894500                                                                          --------->ATERF1(2)                                                                          <---------ATERF1(2)                                                                    xxxxxxxxxxxxxxxx>smallRNA(i)                                                                   --------->ARR14(2)                                                                   <---------ARR14(2)                                                                 --------->LBD16                                                               <---------LBD16                                                             --------->ARR14(2)                                                      ----------->GT1     --------->RAP2.6(2)                                                     <---------------AtSPL8<---------RAP2.6(3)                                                     <---------------AtSPL3------>NtERF2                                                     --------------->AtSPL3--------->LBD16  ---------                                          <----------CDC5    <---------ARR14(2)            <---------AHL20(2)            ---------->DOF2 ---------->DOF2     <xxxxxxxxxxxxxxxxxxxxxxsmallRNA(se3)       <---------YAB1        --------->YAB1 ----------->GT1  --------->ANAC58    <---------GLK1(1) ---------->DOF2 ----ZmHOX2a(1)      --------->RAP2.6(3)--------->ANAC58 <-------TEIL    <---------LBD16  --------->AHL20(2) -----TOE2(3)       --------->MYB52(1) xxxxxxxxxxxxxxxxxxxxxxx>smallRNA(si3)<------NtERF2 <---------AHL20(2)   ggaaacaaaatcaaaatagccaaaacggctaaaagagaactcacgcttaggtgagaaggtacatatccggatttagccggcaaagaactgattttaattg  2894600                                                                                        ------>MYB46(1)                                                                                        ------>MYB83                                      <---------YAB1                                 --------->DEAR3(2)                                    <---------GLK1(1)                        --------->At5g28300                                    --------->CCA1(2)                     <---------LBD16 <----------DOF2                                   --------->ARR14(2)                <---------TOE1(3)<---------MYB59               --------->DAG2      <---------ARR14(2)        <----------DOF2--------->LBD16              ---------->DOF2     <------ZmHOX2a(1)       --------->GLK1(2)<---------ANAC46           <---------ANAC55(2)---------->DOF2  --------->CCA1(2)     <---------TOE2(3)--------->DREB2C(2) >ATHB12  <-------TEIL ------>ZmHOX2a(1)     --------->CCA1(2)     ---------->DOF2  ------->TEIL    <   gaaaacaaaaaatacataaagcttcctctctctaaaggatatgagagagataagagagagaagcttttttaaaggttgcggtaatggaccgactttcaaa  2894700                                                                           <------ZmHOX2a(2)                                                                        <---------HSFB2a(1)                      <---------At4g35610                               --------->HSFB2a(1)              --------->AHL20(1)                                    --------->ANAC58              <---------AHL20(1)                            --------->ANAC46<---------ETT(2)           --------->AHL20(2)                         --------->AHL20(2)--------->MYB46(3)           --------->YAB1                         --------->AHL20(2)--------->ANAC58          <---------AHL20(2) --------->YAB1  <---------AHL20(2)   ------->GAMYB      --------->AHL20(2)    <---------AHL20(2)   --------->AHL20(2) <---------MYB52(2) ---------TOE2(3)     --------->At4g35610    --------->AHL20(2)  --------->MYB46(3)   ctgatgttttaaataatatttttctgctaaataataaacaaaaacatataaataaaaaaaatacacaaccacgaacgatcgacaattgggctcaatcgga  2894800                                                                               <---------ARR14(2)                                                                               --------->ARR14(2)                                                                          --------->MYB52(1)                                                                          -------->P                                                                        ------>ZmHOX2a(1)                                                                       <---------ANAC58                     <---------AHL20(2)                                <---------ANAC58                     --------->AHL20(2)                           <----------DOF2                    --------->AHL20(2)                     <------------CBF  --------->LBD16 --------                <-------TEIL                   ----------->GT1    <---------DAG2    ---------->DOF2 <      ----------->RAV1(1)         <-----------GT1        <---------AHL20(2)<---------LBD16 --------->At4g35610   tggaaaacccacatagcattcatttaattcatataaaaaccatttcagcgagaaaaaatgtaattgggcttttccttaccggatttgaaagtgagcccaa  2894900                                                                                                <----                                                                                               <-----                                                                                             --------                                                                                             <------NtERF2                                                                                            ---------                                                                                           --------->DEAR3(1)                                                                                           --------->ATERF1(2)                                                                                           --------->RAP2.6(2)                                                                                           --------->RRTF1(3)                                                                                           --------->RRTF1(2)                                                                                           --------->DREB2C(2)                                                                                           --------->RAP2.3(2)                                                                                           --------->RAP2.3(3)                                                                                           <---------DEAR3(1)                                                                                          --------->RRTF1(1)                                                                                          <------NtERF2                                                                                          --------->ATERF1(1)                                                                                          --------->RAP2.6(1)                                                                                          --------->ORA47(2)                                                                                          --------->DEAR4(2)                                                                                          --------->ERF1                                                                                          --------->RAP2.3(1)                                                                                         ------>NtERF2                                                                                         --------->ABI4(1)                                                                                         <---------At4g35610                                                                                         <---------ATERF1(1)                                                                                         <---------RAP2.3(1)                                                                                         <---------DREB2C(1)                                                                                         --------->At4g35610                                                                                         <---------DEAR4(2)                                                                                        <---------ATERF1(2)                                                                                        <---------ALFIN1                                                                                        --------->RAP2.3(3)                                                                                        --------->DEAR3(1)                                                                                        --------->ATERF1(2)                                                                                        --------->ANAC46                                                                                        --------->RRTF1(2)                                                                                        --------->RRTF1(3)                                                                                        --------->RAP2.6(2)                                                                                        <---------DEAR3(1)                                                                                        --------->RAP2.3(2)                                                                                       --------->ERF1                                                                                       --------->DEAR4(2)                                                                                       --------->ORA47(2)                                                                                       --------->RAP2.3(1)                                                                                       --------->RAP2.6(1)                                                                                       --------->ATERF1(1)                                                                                       --------->RRTF1(1)                                                                                       <------NtERF2                                                                                      ------>NtERF2 -                                                                                      <---------ATERF1(1)                                     *TSS                                             --------->LBD16                                     <----------ID1                                  --------->ANAC46 --------->CCA1(2)        ---------->DOF2                                           --------->MYB46(3) ---->CBF                --------->AHL20(2)             ---------->ID1       ---------->DOF2------>NtERF2 ---------ARR11(3)       <---------AHL20(2)       <---------MYB52(1)---------->DOF2<---------ATERF1(1)   tagatataaaccctaagaactcagtaattaaagcccaaaacgacaaaaccccgttttcttcgttttacttaaaagaaaacaaagctcccgccgccgccgt  2895000             <---------SPL7         --------->AtMYB61                                                                   --------      ------>NtERF2                                                                         ---------     --------->DEAR3(1)                                                                     <-------- -----MYB52(1)        --------->TOE2(3)                                <----------DOF2      --------- --GAMYB--------->MYB46(3)                                          <---------ALFIN1        --------- ->RAP2.3(1)--------->DEAR3(1)                <----------DOF2  <----------DOF2              <-------- >ABI4(1)<---------ALFIN1          --------->TOE2(3)        ------->TEIL <---------YAB1     <-------- -------->YAB1 --------->SPL7    <---------TOE2(3)         <---------CCA1(2)            ---------->DOF2   tatcacgacgaccaccgtgcgataccctaaatttcaacgttgattccactttgtcaagtttgtatctttcccactttgattccgatttgttaaagatttg  2895100    ---------->DOF2                ----------------->AGL1 ->CCA1(2)                     <---------ANAC58                                 ---------->DOF2 >ARR14(2)                     <---------ANAC58                            <---------ARR14(2) -ARR14(2)             <---------GLK1(1)                                   --------->GLK1(2) >ARR11(1)             --------->GLK1(1)                                  <---------GLK1(2)         - >ARR11(3)   --------------->AGL15--------->ZAT18                     ---------->DOF2               < -ARR11(3)   <----------DOF2  --------->ATHB12 <---------ARR14(2)---------->DOF2===================== -GLK1(2)    <---------------AGL15<---------ZAT18             <------NtERF2--------->ARR14(2)      <-   cagattaaaagttttctttttgaagaaatccatgagtgcccaaatggaagaaccagagactctcggcaaaagaaaagaatctgaaagttcaaaacttcgt  2895200                                                                                             ------>MYB83              ------>NtERF2                                                                  ------>MYB46(1)             --------->DEAR3(1)                                                             ---------             --------->ANAC58                                                              --------->AtMYB61             --------->TGA1a                                                            --------->ANAC58             --------->ANAC58                                                           --------->ANAC58           ------>NtERF2                                                                --------->ANAC46           <---------ATERF1(1)                           <---------ZAT18         --------->ATHB12          ----------->HVH21                             <---------ANAC46         <---------ICU4          --------->DEAR3(1)                        <---------ANAC58             -------->HAHB4     ------->TEIL                                   <---------ANAC58             --------->YAB1 -------->At4g35610                              ------->MYC2                   <---------YAB1 ------ ---------At4g35610                              ------->MYC3                   --------->ICU4------- ======================bZIP_DOF                  <-------MYC2                   <---------ATHB12----- --------YAB1--------->ANAC46    <---------ANAC46<-------MYC3                ------>ZmHOX2a(1)-------   tctgatgaaactccgacgccagaaccaagaacgaagcgtagaagtcttaaacgtgcttgtgtacatgaagttgctgttcctaatgattacacaccaacga  2895300                                                                           ---------->ID1  <---------ARR14(2)    --------->CCA1(2)                                                     <---------WRKY18(1)      <- >MYB52(1)        --------->ANAC58                                       ----------->HVH21 ------->TEIL ->GAMYB          --------->ANAC58                                   <---------TOE1(3)     --------->ARR14(2) -->ANAC58     ----------->HVH21                                     <---------TOE2(3)    <---------CCA1(2) ----->DOF2--------->ATHB12                   <---------O2      <----------DOF2<----------DOF2     <- -->ANAC58<-------TEIL         ------>ZmHOX2a(1)                ------>ZmHOX2a(1)   ---------->DOF2<-   aagaagagacgattcatgggacgcttgataatcctgtcttcaatggagacatggccaagacttatccttttaagcttgacccttttcaaagtgtatctgt  2895400  Previous    Next  AGI:  At2g06990.1    Description:  HEN2 (HUA ENHANCER 2); ATP-dependent helicase. similar to ATP-dependent RNA helicase, putative [Arabidopsis thaliana] (TAIR:AT1G59760.1); similar to hypothetical protein OsI_034105 [Oryza sativa (indica cultivar-group)] (GB:EAY80146.1); similar to unnamed protein product [Vitis vinifera] (GB:CAO66539.1); similar to predicted protein [Physcomitrella patens subsp. patens] (GB:EDQ72204.1); contains InterPro domain Helicase, superfamily 1 and 2, ATP-binding (InterPro:IPR014021); contains InterPro domain DEAD-like helicase, N-terminal (InterPro:IPR014001); contains InterPro domain RNA helicase, ATP-dependent, SK12/DOB1 (InterPro:IPR016438); contai Range:  from: 2894937    to: 2901075    Orientation: Forward Links:  TAIR  MIPS      Please cite the corresponding publications when using AthaMap.
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