Home Tools   - Search   - Colocalization   - Gene Analysis   - Gene Identification   - Small RNA Targets   - MicroRNA Targets Description Documentation Citations Downloads Publications History Contact Links Disclaimer	Search   Chromosome 1 Chromosome 2 Chromosome 3 Chromosome 4 Chromosome 5    Position Exon region Intron region UTR region AGI % Restriction to highly conserved TF binding sites (0-100)   Go to graphical and table display  1        10        20        30        40        50        60        70        80        90        100                                                                             --------->AHL20(2)                    --------->TOE2(3)                                  <---------YAB1       --------->TOE2(3)                --------->ANAC58             --------->YAB1       --------->TOE1(3)      ------>ZmHOX2a(1)                      <---------ICU4          -------- >TOE2(3)        <-----------GT1        --------->ANAC58       --------->TOE2(3)       --------->ANAC58 >TOE1(3)    --------->AHL20(2)       ---------->DOF2          <----------DOF2         --------->ANAC58   acaatacaaccttaaaaatataccctaaattcctaatgtctaaagccaaaaccctataacccatactttaaacatgataaaatgaagacaccctataaaa  2473600                        --------->TOE1(3)                 <----------DOF2                                      <---------ARR11(3)                --------->TOE2(3)                                    <---------CCA1(2)             --          --------->ANAC46                                  --------->At4g35610                    --        --------->ZAT6  --------->TOE2(3)<-----------GT1    <---------At4g35610                    --  XXXXXXXXXXXXXXXXXXXX>MIR2939     --------->AHL20(2) --------->AHL20(2)  ------>ZmHOX2a(1)  -------- ->AHL20(2)     --------->TOE1(3)  <---------YAB1   --------->ANAC55(1)  --------->TOE2(3)   --------   taaacccaaaacactaaacctttaacccttaactcttataaatataccatacacacttaattagcagccctatatcctaaaaactgaccctaaaccctta  2473700                                                        <---------AHL20(2)                                                      <---------YAB1                                                    <--------HAHB4                                                    <---------AHL20(2)                                                    --------->ATHB51                                                    -------->ATHB1                 <---------ICU4                                                    <---------ICU4                 --------->YAB1   <                                                    -------->HAHB4              --------->WOX13(1) <-                                                    --------->YAB1         --------->DOF5.7(2)   <---        --------->MYB52(1)                         --------->ICU4         --------->TOE1(3)      ----        ------>MYB83                          --------->TOE2(3)         <---------TOE1(3)       -----        ------>MYB46(1)         <---------ANAC55(2)<---------ATHB51     <---------TOE2(3)       ----- ------->TOE1(3)                --------->ANAC55(2)<---------YAB1      <---------DOF5.7(2)      <---- ------->YAB1       <----------DOF2           --------->TOE1(3)        --------->MYB52(1)  --------->ANAC46 ------->TOE2(3)    <---------DAG2    --------->TOE2(3) --------->AHL20(2)--------->TOE2(3)--------->ANAC58 ->TOE2(3)         --------->TOE2(3)  --------->TOE1(3)--------->YAB1  <-----------GT1     --------->ANAC58 ->TOE1(3)    <---------DAG2  <---------AHL20(2)   <---------ATHB12  <---------MYB52(2)  ---------->DOF2   atcttaaaccaaacagccttacctttatccatttacttaaccttgaaaccctaattattaaaatataaacaattaacgttatccatcataacaaagccac  2473800                                                --------->ANAC46                                               <XXXXXXXXXXXXXXXXXXXXMIR395B/C/F                                               <---------ALFIN1                                              <---------ALFIN1                                              <---------ATERF1(1)                                           <---------ALFIN1                                          <---------ATERF1(1)                                         <---------ATERF1(1)                                         <---------ALFIN1                                  --------->KAN4(2)                                 --------->KAN4(1)                                 --------->GLK1(1)                                 --------->HSFB2a(1)                                 <---------GLK1(1)                                 <---------HSFB2a(1)                                 <---------KAN4(1)                                 <----------TaMYB80                                --------->ARR11(3)                                <---------KAN4(2)                                --------->ARR14(2)   <------MYB46(1)              ---------->TaMYB80   <------MYB83                 <---------ARR14(2)   ----------->GT1              <---------ARR11(3)--------->LBD16                              <----- <--------P                   <------NtERF2<---------ATERF1(1)                                 ------ -------GAMYB                --------->LBD16 <---------ATERF1(1)                               <----- --------MYB46(3)           <---------ANAC58 <---------ALFIN1                  <---------ANAC55(2) ----MYC3                   <---------ANAC58<---------ATERF1(1)          <---------YAB1        <----- --->MYC3                   <---------ANAC46<---------ALFIN1           --------->YAB1         ------- ---->O2   --------->DAG2  <---------LBD16<---------ALFIN1            <---------YAB1          ------- ---->ANAC46               <<<<<<<<<E2Fc--------->ANAC46          --------->YAB1 --------->AHL20(2) - -----O2  ---------->DOF2  <<<<<<<<<E2Fd<---------ALFIN1        <---------ARR11(3)        --------->ATHB12   gcggttggagaaaaaagtccctataatttggcgggatattcccccccccccccccaaatatttcaaaatcatattataaataagtaaatgtgtgattagg  2473900 ----ANAC55(2)              <-----------GT1 --->ANAC55(2)        <------ZmHOX2a(1)                                                      -------- -MYB83           ---------->DOF2                                                           --------- -MYB46(1)        --------->MYB52(1)              <---------MYB46(3) --------->ANAC58      <---------ATHB12 -->MYB59       <---------MYB59                ------------>MYB.PH3(2)  ------->TEIL<---------ETT(1) -->MYB111(1)   --------->TOE2(3)       --------->ANAC46             --------->ANAC58  ------------>CBF -------->YAB1 <---------ANAC55(2) --------->ANAC46         <-----------HVH21  ------>ZmHOX2a(1)  <--   tatcatatgctccaaatacctaaaggatttatactatgctccacaaaatagtttgttagaagagtcactgcatgcatcgtcctgttccgaccaataatct  2474000                                                                              --------->YAB1                                                                              <---------ICU4                                 --------->HSFB2a(2)                         <---------ATHB12                                 ------>ZmHOX2a(1)                       <---------ATHB12                                 <---------HSFB2a(2)             --------->ARR14(2)         *TSS            <------------MYB.PH3(2)                 --------->GLK1(2) ->GLK1(2) --------->LBD16------->GAMYB                          <---------ARR11(3) >YAB1--------->REM1(1)  <---------MYB52(2)      --------->MYB46(3)    --------->GLK1(1)  ---------->DOF2 -------AtLEC2           --------->MYB46(3)   <------NtERF2  --------->YAB1--------->WOX13(1)   -----   gcatcgctacatccgtagtagaagtcaacaaactcctagacggatggccgaacaaacttgtaatcaaaatctgaaatcaatcatcaggtttcaaaaggag  2474100                                                                            --------->ANAC58                                                                            --------->ANAC58                                                                            --------->DREB2C(2)                                                                            --------->RAP2.6(2)                                                                           <xxxxxxxxxxxxxxxxxxxxsmallRNA(se3)                                                                           --------->DEAR3(2)                                                                           --------->ATERF1(1)                     ---------->DOF2      ---------->DOF2                  --------->MYB46(3)       <---------TOE2(3)       <---------ANAC46                           <---------ATERF1(1)  <----- --------->ICU4    <---------YAB1      --------->YAB1          <-----------GT1                 ------ ------>GT1     ------>ZmHOX2a(1) ------->TEIL    <---------AHL20(2)     <---------PCF5       <------   gtaatagttgaggcagtccttataaaagagtctacgtatatttataaagtttttattttggttttttacatatagggaccgccatcaaactttcacatat  2474200                                                                                    <xxxxxxxxxxxxxxxx                                                                                  --------->ANAC58                                                                                  --------->ANAC58<xx                                                                              <------MYB46(1) -------                                  ----------->HVH21                           <------MYB83    =======          --------->AtLEC2      <---------At4g35610    ---------->DOF2      <--------P        <------ ----ARR14(2)           --------->At4g35610       <------ZmHOX2a(1)        <---------MYB52(1)<------- --->ARR14(2)        <---------MYB52(1)         <---------TOE2(3)         --------->LBD16    <------- ---CCA1(2)    --------->ICU4   --------->At4g35610----------->GT1      <---------LBD16   <--------P   ctgtaggcattcttgcaaaaattgttagctatatagctgaaggtggaattaaggagttaaagaattggataatctccggtagggaaggaatggtagctat  2474300             --------->TOE2(3)         <---------GLK1(1)                                  <---------ALFIN1       xxxxxxxxxxxxxxxxxxxxxxx>smallRNA(le3)               <---------ZAT18 xxxxxxsmallRNA(si3)                                       <---------WRKY38(1)                ------- xxxxxxxxxxxxxxxxxxsmallRNA(fl3)                          --------->PCF5                      ------- -------->AGL15           ----------->GT1    --------->GLK1(2)             --------->ZAT18  <-------- ==================================================================================================== ---------AGL15           --------->ICU4    <---------GLK1(2)            --------------->AtSPL8 ----------AGL3      <---------ANAC55(2)    --------->ARR11(3)           <---------------AtSPL8------ ----------AGL2      --------->ANAC55(2)    <---------ARR11(3)<---------ALFIN1         <----------DOF2   atttagtctggatagcctaaaatatgtaatgtttaacaaatgtagagattttgtattgtggtccacacttgataatgtgtacaattcttctttttttcca  2474400                                                                                               ------                                                                                               <-----                                                                                               <-----                                                                                             <-------                                                                                          <------NtERF2                                                                                          <----------                                                                                         <-----------HVH21                                                                                        <---------MYB46(3)               <---------ARR11(3)                                                 --------->YAB1     ---------->DOF2       XXXXXXXXXXXXXXXXXXXX>MIR857                            <--------ATHB1 ---------->AGL1         <----------DOF2                                          <---------ICU4 ---------->AG --------->ARR11(3)                                                <---------ATHB12 ---GT1       --------->RVE1(1)  <<<<<<<<<MYB98                                  <---------ATHB51 --- ===========MADS_MADS <---------YAB1         <---------YAB1        <---------ANAC46     <---------DEAR3(1) --------->AGL15   ------>ZmHOX2a(1)---------->DOF2          <---------AHL20(2)  --------->ICU4------   aatgtgtaaaagaaaaaaatccttatgctttgtatgttaaaagcattattttggcatttctattttttgacttggaagaggcaataatggtcgtcgcagc  2474500  Previous    Next  AGI:  At2g06285.1    Description:  transposable element gene. pseudogene, hypothetical protein Range:  from: 2474009    to: 2474761    Orientation: Forward Links:  TAIR  MIPS      Please cite the corresponding publications when using AthaMap.
	printer-friendly version