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Chromosome 1
Chromosome 2
Chromosome 3
Chromosome 4
Chromosome 5
Position
Exon region
Intron region
UTR region
AGI
% Restriction to highly conserved TF binding sites (0-100)
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1 10 20 30 40 50 60 70 80 90 100
--------->
AHL20(2)
--------->
TOE2(3)
<---------
YAB1
--------->
TOE2(3)
--------->
ANAC58
--------->
YAB1
--------->
TOE1(3)
------>
ZmHOX2a(1)
<---------
ICU4
--------
>
TOE2(3)
<-----------
GT1
--------->
ANAC58
--------->
TOE2(3)
--------->
ANAC58
>
TOE1(3)
--------->
AHL20(2)
---------->
DOF2
<----------
DOF2
--------->
ANAC58
acaatacaaccttaaaaatataccctaaattcctaatgtctaaagccaaaaccctataacccatactttaaacatgataaaatgaagacaccctataaaa
2473600
--------->
TOE1(3)
<----------
DOF2
<---------
ARR11(3)
--------->
TOE2(3)
<---------
CCA1(2)
--
--------->
ANAC46
--------->
At4g35610
--
--------->
ZAT6
--------->
TOE2(3)
<-----------
GT1
<---------
At4g35610
--
XXXXXXXXXXXXXXXXXXXX>
MIR2939
--------->
AHL20(2)
--------->
AHL20(2)
------>
ZmHOX2a(1)
--------
->
AHL20(2)
--------->
TOE1(3)
<---------
YAB1
--------->
ANAC55(1)
--------->
TOE2(3)
--------
taaacccaaaacactaaacctttaacccttaactcttataaatataccatacacacttaattagcagccctatatcctaaaaactgaccctaaaccctta
2473700
<---------
AHL20(2)
<---------
YAB1
<--------
HAHB4
<---------
AHL20(2)
--------->
ATHB51
-------->
ATHB1
<---------
ICU4
<---------
ICU4
--------->
YAB1
<
-------->
HAHB4
--------->
WOX13(1)
<-
--------->
YAB1
--------->
DOF5.7(2)
<---
--------->
MYB52(1)
--------->
ICU4
--------->
TOE1(3)
----
------>
MYB83
--------->
TOE2(3)
<---------
TOE1(3)
-----
------>
MYB46(1)
<---------
ANAC55(2)
<---------
ATHB51
<---------
TOE2(3)
-----
------->
TOE1(3)
--------->
ANAC55(2)
<---------
YAB1
<---------
DOF5.7(2)
<----
------->
YAB1
<----------
DOF2
--------->
TOE1(3)
--------->
MYB52(1)
--------->
ANAC46
------->
TOE2(3)
<---------
DAG2
--------->
TOE2(3)
--------->
AHL20(2)
--------->
TOE2(3)
--------->
ANAC58
->
TOE2(3)
--------->
TOE2(3)
--------->
TOE1(3)
--------->
YAB1
<-----------
GT1
--------->
ANAC58
->
TOE1(3)
<---------
DAG2
<---------
AHL20(2)
<---------
ATHB12
<---------
MYB52(2)
---------->
DOF2
atcttaaaccaaacagccttacctttatccatttacttaaccttgaaaccctaattattaaaatataaacaattaacgttatccatcataacaaagccac
2473800
--------->
ANAC46
<XXXXXXXXXXXXXXXXXXXX
MIR395B/C/F
<---------
ALFIN1
<---------
ALFIN1
<---------
ATERF1(1)
<---------
ALFIN1
<---------
ATERF1(1)
<---------
ATERF1(1)
<---------
ALFIN1
--------->
KAN4(2)
--------->
KAN4(1)
--------->
GLK1(1)
--------->
HSFB2a(1)
<---------
GLK1(1)
<---------
HSFB2a(1)
<---------
KAN4(1)
<----------
TaMYB80
--------->
ARR11(3)
<---------
KAN4(2)
--------->
ARR14(2)
<------
MYB46(1)
---------->
TaMYB80
<------
MYB83
<---------
ARR14(2)
----------->
GT1
<---------
ARR11(3)
--------->
LBD16
<-----
<--------
P
<------
NtERF2
<---------
ATERF1(1)
------
-------
GAMYB
--------->
LBD16
<---------
ATERF1(1)
<-----
--------
MYB46(3)
<---------
ANAC58
<---------
ALFIN1
<---------
ANAC55(2)
----
MYC3
<---------
ANAC58
<---------
ATERF1(1)
<---------
YAB1
<-----
--->
MYC3
<---------
ANAC46
<---------
ALFIN1
--------->
YAB1
-------
---->
O2
--------->
DAG2
<---------
LBD16
<---------
ALFIN1
<---------
YAB1
-------
---->
ANAC46
<<<<<<<<<
E2Fc
--------->
ANAC46
--------->
YAB1
--------->
AHL20(2)
-
-----
O2
---------->
DOF2
<<<<<<<<<
E2Fd
<---------
ALFIN1
<---------
ARR11(3)
--------->
ATHB12
gcggttggagaaaaaagtccctataatttggcgggatattcccccccccccccccaaatatttcaaaatcatattataaataagtaaatgtgtgattagg
2473900
----
ANAC55(2)
<-----------
GT1
--->
ANAC55(2)
<------
ZmHOX2a(1)
--------
-
MYB83
---------->
DOF2
---------
-
MYB46(1)
--------->
MYB52(1)
<---------
MYB46(3)
--------->
ANAC58
<---------
ATHB12
-->
MYB59
<---------
MYB59
------------>
MYB.PH3(2)
------->
TEIL
<---------
ETT(1)
-->
MYB111(1)
--------->
TOE2(3)
--------->
ANAC46
--------->
ANAC58
------------>
CBF
-------->
YAB1
<---------
ANAC55(2)
--------->
ANAC46
<-----------
HVH21
------>
ZmHOX2a(1)
<--
tatcatatgctccaaatacctaaaggatttatactatgctccacaaaatagtttgttagaagagtcactgcatgcatcgtcctgttccgaccaataatct
2474000
--------->
YAB1
<---------
ICU4
--------->
HSFB2a(2)
<---------
ATHB12
------>
ZmHOX2a(1)
<---------
ATHB12
<---------
HSFB2a(2)
--------->
ARR14(2)
*
TSS
<------------
MYB.PH3(2)
--------->
GLK1(2)
->
GLK1(2)
--------->
LBD16
------->
GAMYB
<---------
ARR11(3)
>
YAB1
--------->
REM1(1)
<---------
MYB52(2)
--------->
MYB46(3)
--------->
GLK1(1)
---------->
DOF2
-------
AtLEC2
--------->
MYB46(3)
<------
NtERF2
--------->
YAB1
--------->
WOX13(1)
-----
gcatcgct
acatccgtagtagaagtcaacaaactcctagacggatggccgaacaaacttgtaatcaaaatctgaaatcaatcatcaggtttcaaaaggag
2474100
--------->
ANAC58
--------->
ANAC58
--------->
DREB2C(2)
--------->
RAP2.6(2)
<xxxxxxxxxxxxxxxxxxxx
smallRNA(se3)
--------->
DEAR3(2)
--------->
ATERF1(1)
---------->
DOF2
---------->
DOF2
--------->
MYB46(3)
<---------
TOE2(3)
<---------
ANAC46
<---------
ATERF1(1)
<-----
--------->
ICU4
<---------
YAB1
--------->
YAB1
<-----------
GT1
------
------>
GT1
------>
ZmHOX2a(1)
------->
TEIL
<---------
AHL20(2)
<---------
PCF5
<------
gtaatagttgaggcagtccttataaaagagtctacgtatatttataaagtttttattttggttttttacatatagggaccgccatcaaactttcacatat
2474200
<xxxxxxxxxxxxxxxx
--------->
ANAC58
--------->
ANAC58
<xx
<------
MYB46(1)
-------
----------->
HVH21
<------
MYB83
=======
--------->
AtLEC2
<---------
At4g35610
---------->
DOF2
<--------
P
<------
----
ARR14(2)
--------->
At4g35610
<------
ZmHOX2a(1)
<---------
MYB52(1)
<-------
--->
ARR14(2)
<---------
MYB52(1)
<---------
TOE2(3)
--------->
LBD16
<-------
---
CCA1(2)
--------->
ICU4
--------->
At4g35610
----------->
GT1
<---------
LBD16
<--------
P
ctgtaggcattcttgcaaaaattgttagctatatagctgaaggtggaattaaggagttaaagaattggataatctccggtagggaaggaatggtagctat
2474300
--------->
TOE2(3)
<---------
GLK1(1)
<---------
ALFIN1
xxxxxxxxxxxxxxxxxxxxxxx>
smallRNA(le3)
<---------
ZAT18
xxxxxx
smallRNA(si3)
<---------
WRKY38(1)
-------
xxxxxxxxxxxxxxxxxx
smallRNA(fl3)
--------->
PCF5
-------
-------->
AGL15
----------->
GT1
--------->
GLK1(2)
--------->
ZAT18
<--------
====================================================================================================
---------
AGL15
--------->
ICU4
<---------
GLK1(2)
--------------->
AtSPL8
----------
AGL3
<---------
ANAC55(2)
--------->
ARR11(3)
<---------------
AtSPL8
------
----------
AGL2
--------->
ANAC55(2)
<---------
ARR11(3)
<---------
ALFIN1
<----------
DOF2
atttagtctggatagcctaaaatatgtaatgtttaacaaatgtagagattttgtattgtggtccacacttgataatgtgtacaattcttctttttttcca
2474400
------
<-----
<-----
<-------
<------
NtERF2
<----------
<-----------
HVH21
<---------
MYB46(3)
<---------
ARR11(3)
--------->
YAB1
---------->
DOF2
XXXXXXXXXXXXXXXXXXXX>
MIR857
<--------
ATHB1
---------->
AGL1
<----------
DOF2
<---------
ICU4
---------->
AG
--------->
ARR11(3)
<---------
ATHB12
---
GT1
--------->
RVE1(1)
<<<<<<<<<
MYB98
<---------
ATHB51
---
===========
MADS_MADS
<---------
YAB1
<---------
YAB1
<---------
ANAC46
<---------
DEAR3(1)
--------->
AGL15
------>
ZmHOX2a(1)
---------->
DOF2
<---------
AHL20(2)
--------->
ICU4
------
aatgtgtaaaagaaaaaaatccttatgctttgtatgttaaaagcattattttggcatttctattttttgacttggaagaggcaataatggtcgtcgcagc
2474500
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AGI:
At2g06285.1
Description:
transposable element gene. pseudogene, hypothetical protein
Range:
from: 2474009
to: 2474761
Orientation: Forward
Links:
TAIR
MIPS
Please cite the corresponding
publications
when using AthaMap.