Home Tools   - Search   - Colocalization   - Gene Analysis   - Gene Identification   - Small RNA Targets   - MicroRNA Targets Description Documentation Citations Downloads Publications History Contact Links Disclaimer	Search   Chromosome 1 Chromosome 2 Chromosome 3 Chromosome 4 Chromosome 5    Position Exon region Intron region UTR region AGI % Restriction to highly conserved TF binding sites (0-100)   Go to graphical and table display  1        10        20        30        40        50        60        70        80        90        100         <---------GLK1(2)     ------>ZmHOX2a(1)   ----------->RAV1(2)                                                                           ---- --NtERF2                                                                                       ----- -->ETT(1)              ---------->DOF2                                                    --------->ANAC46 ---ANAC46      ------->GAMYB   ---------->DOF2------->TEIL        <----------DOF2   <-----------HVH21 ---HVH21      --------->MYB46(3)             <---------CCA1(2) <-----------GT1--------->YAB1 -------   agacctcctgattttcaacgacctcagaaagttgcaaagttgagttctgtatctcaacatttgtattcactttgctaactatcacattgtcagacacaac  2317900        <-----------GT1   <<<<<<<ZML2                                                                                <------   <---------ARR11(3)                                         --------->ANAC46           <---------ICU4 --->GAMYB                                           <---------At4g35610  --------->ANAC46  <-------- ---->MYB46(3)                        ------------>CBF        --------->ANAC58          --------->AHL20(2) -->MYB52(1)                  *TSS   ------>ZmHOX2a(1)        --------->ANAC58 ----------->HVH21   cgctagaacttcaccttcttctaattccatgactctctccttcaatggagacttcggcttactcacacaaacatccacgagatgaccccatttattacaa  2318000                      --------->YAB1                  --------->TOE1(2)                  ------->GAMYB                 --------->MYB46(3)                --------->ANAC58                --------->ANAC58                                     --------->TOE1(3)             --------->ATERF1(1)                                    ----------->RAV1(2)             <------NtERF2                                  --------->ZAT14            --------->ANAC58                                <---------ZAT14    <----------DOF2 <---------TOE2(3)       --------->ARR11(3)     ------->TEIL ----ID1    --------->ANAC58                <---------ARR11(3) --------->ANAC46 ---GT1   <------ZmHOX2a(1)        <---------ALFIN1      ------>ZmHOX2a(1)         --------->ARR14(2)   caagagcatttaggaggcaaccaaggataaacgaactccacattaacatcttcttcatcctctatactgaacctgaaacactttggaacctcttgcgaaa  2318100                                                                                           ----------                                                                                       <--------P                                                                                     ----------->GT1                                                                                <---------ZAT14                                     <---------ZAT18           <---------YAB1   --------->ZAT14                        --------->REM1(1)          <---------LBD16          <---------ALFIN1   ------                <----------DOF2      --------->ZAT18  <------ZmHOX2a(1)--------->GLK1(1) --------->ANAC58         --------->MYB46(3)    --------->TOE2(3)   <-----------RAV1(2) <---------GLK1(1) --------->ANAC58   gattaacttcaacaaatacttttgcttcatcaaacttagtgcataactctgtttcaggatgaagtctaattggatttcccactggactggtaagaaagct  2318200          <------ZmHOX2a(1)         --------->LBD16                       ------------>CBF        --------->LBD16                       --------->ANAC46       --------->HSFB2a(2)                   ------->GAMYB       <---------LBD16                      <-----------------AGL1                                <--       <---------HSFB2a(2)           <---------At5g28300                                         <--- >DOF2 <-----------RAV1(2)          <-----------GT1                  *TSS---------->DOF2         <--- --->TOE1(3)          --------->ALFIN1 <---------ZAT6               --------->ICU4               <---   taaaccattccaggagaacatggaatggggaacattttttactgtaacccacaatggcatagttttagacatgagtaaagcttatggtcgaatagagtgg  2318300                                                                           <---------DEAR3(2) <---------YAB1                                                        --------->O2 <---------AHL20(2)                                                    <---------O2 --------DOF2                                                      <-----------HVH21 ------ANAC58                                                  --------->DAG2            --------->GLK1(2) ------ANAC58                                                 ---------->DOF2           <---------GLK1(2) ------ANAC46    ---------->DOF2                           ----------->GT1 <---------MYB46(3)    ----   ctttttattgaacatttactaaagaaaattggtttttgcgataaatagttttttttggataatgtaaagtgtcacatcggttcgatataagattctaact  2318400                                                                   <---------AHL20(2)                                                                   --------->AHL20(2)                                                             --------->TOE2(3)                                                          <-----------GT1                                                     <-------GAMYB<---------AHL20(2)                                                    ------>ZmHOX2a(2)                                                   <------ZmHOX2a(2)                                <                             ---------->DOF2      <---------ARR11(3)                            -----                           ----------->HVH21      --------->ARR11(3)   --------->YAB1     <---------- ----->MYB52(1)  <---------YAB1             ---------->DOF2  <---------DAG2<---------------AtSPL8   -   aatggacagcctcgaaagtttgatagtctctgaaagaggcttaaggcaaagagatcgttatcaccttatttatttataatgtacagaagtttttgttgcc  2318500                                                                            -------->HAHB4                                                                            <---------AHL20(2)                                                                            <---------ICU4                                                                           <---------YAB1                                                                           <---------ATHB12                                                                 ------>ZmHOX2a(2)                                                                <<<<<<<<<GATA-2                                                                <<<<<<<<<GATA-3                                                                <------ZmHOX2a(2)                                                                <<<<<<<<<GATA-1               ----------->GT1                                  <<<<<<<<<GATA-4               <----------ID1                                   <---------GLK1(1)        --------->ANAC58                                       <---------ARR11(3)        --------->ANAC58                                       --------->ARR11(3)        ----------->GT1                                        <---------AGP1 <---------YAB1      ---------->DOF2                             --------->ANAC58         --------->ICU4  <---------------------WRI1                      --------->ANAC58         <---------ATHB51  <---------LBD16                                 --------->ANAC46   --------->ZAT6 ---------ARR14(2)                     ---------->DOF2--------->ANAC58   --------->YAB1      <------- ---------->AGL15                 <------ZmHOX2a(1)   --------->ANAC58   <---------ICU4      <------- -RAV1(1)    ---------->DOF2      =====================================HOX2a_HOX2a    <---------YAB1 -------->ARR14(2)        <----------DOF2     --------->ZAT6  <---------CCA1(2)  <---------LBD16   <-   aatattcggaaagcaaaaagaaaaaaaacttttacaggaatgaaagtaacacaagcaagtctctagatctctcactaattattctcggatgatagctttt  2318600                                                                                <---------AHL20(2)                            <---------At4g35610                                 --------->AHL20(1)                            --------->At4g35610                                 <---------AHL20(1)                          --------->ZAT14              --------->CCA1(2)        --------->AHL20(2)                          --------->ZAT18           --------->DAG2             --------->AHL20(2)                          <---------ZAT14         ---------->DOF2          --------->MYB46(3)     <--                          <---------ZAT18       <---------AHL20(2)       --------->MYB52(1)       <-- ---DOF2             --------->ZAT14         ----------->GT1            <---------WRKY38(1)   ------- --DAG2              <---------ZAT14     <------ZmHOX2a(1)              <---------WRKY12    <-------- ---------DOF2  ---------->DOF2        <---------TOE2(3)         <---------ARR14(2)   <-----------GT1   tcttttacagaatgacaaaaaagagcagtgcgctgtcgttttaggaatattaaaaaggtatgaagaggttttggccaacgaataaattttacaaaatcat  2318700                          <-------TEIL                        <---------ARR14(2)               --------->ANAC58               --------->YAB1               <------NtERF2 -------DEAR3(2)        --------->ARR14(2)   <---------YAB1    xxxxxxxxxxxxxxxxxxxxxxx>smallRNA(i2) -------MYB46(3) ---------->DOF2          --------->ICU4    <------ZmHOX2a(2) -->ATHB12     --------->ANAC58         ------->TEIL       <---------ARR11(3)                <------ZmHOX2a(1) -ARR11(3)     --------->ANAC46 ---------->DOF2            --------->ARR11(3)              <---------TOE2(3)   cggttcaattcggacacaagaaagaagattcactgaaagacgaacttatgagaactctagagatcactaatttagggggcatgggctcttatttaggatt  2318800  Previous    Next  AGI:  At2g05980.1    Description:  transposable element gene. non-LTR retrotransposon family (LINE), has a 1.0e-42 P-value blast match to GB:NP_038607 L1 repeat, Tf subfamily, member 9 (LINE-element) (Mus musculus) Range:  from: 2313800    to: 2317930    Orientation: Reverse Links:  TAIR  MIPS    AGI:  At2g05985.1    Description:  transposable element gene. hypothetical protein Range:  from: 2318269    to: 2319702    Orientation: Forward Links:  TAIR  MIPS      Please cite the corresponding publications when using AthaMap.
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