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Chromosome 1
Chromosome 2
Chromosome 3
Chromosome 4
Chromosome 5
Position
Exon region
Intron region
UTR region
AGI
% Restriction to highly conserved TF binding sites (0-100)
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1 10 20 30 40 50 60 70 80 90 100
<---------
GLK1(2)
------>
ZmHOX2a(1)
----------->
RAV1(2)
----
--
NtERF2
-----
-->
ETT(1)
---------->
DOF2
--------->
ANAC46
---
ANAC46
------->
GAMYB
---------->
DOF2
------->
TEIL
<----------
DOF2
<-----------
HVH21
---
HVH21
--------->
MYB46(3)
<---------
CCA1(2)
<-----------
GT1
--------->
YAB1
-------
agacctcctgattttcaacgacctcagaaagttgcaaagttgagttctgtatctcaacatttgtattcactttgctaactatcacattgtcagacacaac
2317900
<-----------
GT1
<<<<<<<
ZML2
<------
<---------
ARR11(3)
--------->
ANAC46
<---------
ICU4
--->
GAMYB
<---------
At4g35610
--------->
ANAC46
<--------
---->
MYB46(3)
------------>
CBF
--------->
ANAC58
--------->
AHL20(2)
-->
MYB52(1)
*
TSS
------>
ZmHOX2a(1)
--------->
ANAC58
----------->
HVH21
cgctagaacttcaccttcttctaattccat
gactctctccttcaatggagacttcggcttactcacacaaacatccacgagatgaccccatttattacaa
2318000
--------->
YAB1
--------->
TOE1(2)
------->
GAMYB
--------->
MYB46(3)
--------->
ANAC58
--------->
ANAC58
--------->
TOE1(3)
--------->
ATERF1(1)
----------->
RAV1(2)
<------
NtERF2
--------->
ZAT14
--------->
ANAC58
<---------
ZAT14
<----------
DOF2
<---------
TOE2(3)
--------->
ARR11(3)
------->
TEIL
----
ID1
--------->
ANAC58
<---------
ARR11(3)
--------->
ANAC46
---
GT1
<------
ZmHOX2a(1)
<---------
ALFIN1
------>
ZmHOX2a(1)
--------->
ARR14(2)
caagagcatttaggaggcaaccaaggataaacgaactccacattaacatcttcttcatcctctatactgaacctgaaacactttggaacctcttgcgaaa
2318100
----------
<--------
P
----------->
GT1
<---------
ZAT14
<---------
ZAT18
<---------
YAB1
--------->
ZAT14
--------->
REM1(1)
<---------
LBD16
<---------
ALFIN1
------
<----------
DOF2
--------->
ZAT18
<------
ZmHOX2a(1)
--------->
GLK1(1)
--------->
ANAC58
--------->
MYB46(3)
--------->
TOE2(3)
<-----------
RAV1(2)
<---------
GLK1(1)
--------->
ANAC58
gattaacttcaacaaatacttttgcttcatcaaacttagtgcataactctgtttcaggatgaagtctaattggatttcccactggactggtaagaaagct
2318200
<------
ZmHOX2a(1)
--------->
LBD16
------------>
CBF
--------->
LBD16
--------->
ANAC46
--------->
HSFB2a(2)
------->
GAMYB
<---------
LBD16
<-----------------
AGL1
<--
<---------
HSFB2a(2)
<---------
At5g28300
<---
>
DOF2
<-----------
RAV1(2)
<-----------
GT1
*
TSS
---------->
DOF2
<---
--->
TOE1(3)
--------->
ALFIN1
<---------
ZAT6
--------->
ICU4
<---
taaaccattccaggagaacatggaatggggaacattttttactgtaacccacaatggcatagttttag
acatgagtaaagcttatggtcgaatagagtgg
2318300
<---------
DEAR3(2)
<---------
YAB1
<---------
O2
<---------
AHL20(2)
--------->
O2
--------
DOF2
<-----------
HVH21
------
ANAC58
--------->
DAG2
--------->
GLK1(2)
------
ANAC58
---------->
DOF2
<---------
GLK1(2)
------
ANAC46
---------->
DOF2
----------->
GT1
<---------
MYB46(3)
----
ctttttattgaacatttactaaagaaaattggtttttgcgataaatagttttttttggataatgtaaagtgtcacatcggttcgatataagattctaact
2318400
<---------
AHL20(2)
--------->
AHL20(2)
--------->
TOE2(3)
<-----------
GT1
<-------
GAMYB
<---------
AHL20(2)
------>
ZmHOX2a(2)
<------
ZmHOX2a(2)
<
---------->
DOF2
--------->
ARR11(3)
-----
----------->
HVH21
<---------
ARR11(3)
--------->
YAB1
<----------
----->
MYB52(1)
<---------
YAB1
---------->
DOF2
<---------
DAG2
<---------------
AtSPL8
-
aatggacagcctcgaaagtttgatagtctctgaaagaggcttaaggcaaagagatcgttatcaccttatttatttataatgtacagaagtttttgttgcc
2318500
<---------
ICU4
<---------
AHL20(2)
-------->
HAHB4
<---------
ATHB51
--------->
ICU4
------>
ZmHOX2a(2)
<<<<<<<<<
GATA-2
<---------
GLK1(1)
<<<<<<<<<
GATA-3
<------
ZmHOX2a(2)
----------->
GT1
<<<<<<<<<
GATA-1
<----------
ID1
<<<<<<<<<
GATA-4
--------->
ANAC58
--------->
ARR11(3)
----------->
GT1
<---------
ARR11(3)
--------->
ANAC58
<---------
AGP1
<---------
YAB1
---------->
DOF2
--------->
ANAC46
<---------
ATHB12
<---------------------
WRI1
--------->
ANAC58
<---------
YAB1
<---------
LBD16
--------->
ANAC58
--------->
ZAT6
---------
ARR14(2)
---------->
DOF2
--------->
ANAC58
--------->
YAB1
<-------
---------->
AGL15
=====================================
HOX2a_HOX2a
<---------
YAB1
-
RAV1(1)
---------->
DOF2
<------
ZmHOX2a(1)
--------->
ANAC58
<---------
ICU4
<-------
-------->
ARR14(2)
<----------
DOF2
--------->
ZAT6
<---------
CCA1(2)
<---------
LBD16
<-
aatattcggaaagcaaaaagaaaaaaaacttttacaggaatgaaagtaacacaagcaagtctctagatctctcactaattattctcggatgatagctttt
2318600
--------->
AHL20(2)
<---------
At4g35610
<---------
AHL20(1)
--------->
At4g35610
--------->
AHL20(1)
--------->
ZAT18
--------->
CCA1(2)
<---------
AHL20(2)
--------->
ZAT14
--------->
DAG2
--------->
AHL20(2)
<---------
ZAT14
---------->
DOF2
--------->
MYB46(3)
<--
<---------
ZAT18
<---------
AHL20(2)
--------->
MYB52(1)
<--
---
DOF2
<---------
ZAT14
----------->
GT1
<---------
WRKY38(1)
-------
--
DAG2
--------->
ZAT14
<------
ZmHOX2a(1)
<---------
WRKY12
<--------
---------
DOF2
---------->
DOF2
<---------
TOE2(3)
<---------
ARR14(2)
<-----------
GT1
tcttttacagaatgacaaaaaagagcagtgcgctgtcgttttaggaatattaaaaaggtatgaagaggttttggccaacgaataaattttacaaaatcat
2318700
<-------
TEIL
<---------
ARR14(2)
--------->
ANAC58
--------->
YAB1
<------
NtERF2
-------
DEAR3(2)
--------->
ARR14(2)
<---------
YAB1
xxxxxxxxxxxxxxxxxxxxxxx>
smallRNA(i2)
-------
MYB46(3)
---------->
DOF2
--------->
ICU4
<------
ZmHOX2a(2)
-->
ATHB12
--------->
ANAC46
------->
TEIL
<---------
ARR11(3)
<------
ZmHOX2a(1)
-
ARR11(3)
--------->
ANAC58
---------->
DOF2
--------->
ARR11(3)
<---------
TOE2(3)
cggttcaattcggacacaagaaagaagattcactgaaagacgaacttatgagaactctagagatcactaatttagggggcatgggctcttatttaggatt
2318800
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AGI:
At2g05980.1
Description:
transposable element gene. non-LTR retrotransposon family (LINE), has a 1.0e-42 P-value blast match to GB:NP_038607 L1 repeat, Tf subfamily, member 9 (LINE-element) (Mus musculus)
Range:
from: 2313800
to: 2317930
Orientation: Reverse
Links:
TAIR
MIPS
AGI:
At2g05985.1
Description:
transposable element gene. hypothetical protein
Range:
from: 2318269
to: 2319702
Orientation: Forward
Links:
TAIR
MIPS
Please cite the corresponding
publications
when using AthaMap.