Home Tools   - Search   - Colocalization   - Gene Analysis   - Gene Identification   - Small RNA Targets   - MicroRNA Targets Description Documentation Citations Downloads Publications History Contact Links Disclaimer	Search   Chromosome 1 Chromosome 2 Chromosome 3 Chromosome 4 Chromosome 5    Position Exon region Intron region UTR region AGI % Restriction to highly conserved TF binding sites (0-100)   Go to graphical and table display  1        10        20        30        40        50        60        70        80        90        100         ------>MYB46(1)       =======================RAV       <xxxxxxxxxxxxxxxxxxxxxxsmallRNA(s2)       ------>MYB83       ----------->RAV1(1)                                            <xxxxxxxxxxxxxxxxxxxxxxxsmallRNA(se3)     --------->MYB46(3)                                               <---------At4g35610     <---------MYB55(2)                                               --------->At4g35610    --------->ANAC46               ---------->DOF2                    <---------ZAT2    --------->ANAC58   <---------ANAC46                               --------->ZAT2        ---------    --------->ANAC58 <---------At4g35610                            <---------WRKY38(1)    <--------- <---------ZAT18     --------->At4g35610                            <---------WRKY12  --------->ALFIN1 --------->ZAT14    <-----------RAV1(1)       <-----------ARR10     <-----------RAV1(2)<-----------HVH21 <---------ZAT14   <xxxxxxxxxxxxxxxxxxxxxxxxxsmallRNA(si3)        <-----------HVH21<---------DEAR3(1) --------->ZAT18  ----------->RAV1(2)    --------->MYB52(1)     --------->LBD16   <---------At4g35610 ----->LBD16      <---------At4g35610 <---------At4g35610     <---------LBD16  <---------ZAT14   gagagcacccaacatagcccatctgctgtggattacttcaagctcacggttcttagcgaatgtctccgggtcagccgagagtccagcggtgtcccagccg  1800000             <-----------GT1      --------->LBD16 <---------ANAC55(2)                                                     <------     --------->LBD16  --------->ANAC55(2) --------->HSFB2a(2)                                 <------    <---------LBD16  --------->MYB59      <---------HSFB2a(2)                                 -------   <---------LBD16 <---------MYB52(1)     --------->LBD16                                    <------- >ANAC46  --------->ARR14(2)    <---------ANAC46                                             -------- --RAV1(2)<---------ARR14(2) <---------DEAR3(1)                  --------->SPL7              --------   tagtctccggggtattctccagttaagtaagacggtgtgttctccgagaatggtcccaagtacttgggacggtctggtccatacctgttacaaaattata  1800100                                 <---------ICU4                               <---------TOE1(3)                               <---------TOE2(3)                   =====================HOX2a_HOX2a                   <------ZmHOX2a(2)                  <---------ARR14(2)        <---------MYB46(3)    --------->MYB52(1)     <------MYB83 --------->ARR11(3)     <------MYB46(1)------>ZmHOX2a(2)     ----------->GT1====================HOX2a_HOX2a ---AHL20(2)      <-----------ARR10                                     <------MYB46(1) ---AHL20(1)      <---------AGP1 <------ZmHOX2a(1)                      <------MYB83      <xxxxxxxxxx -->AHL20(1)      --------->AGP1--------->ICU4                         --------->MYB59 <---------LBD16 --AHL20(2)       --------->ARR14(2)  <---------ANAC55(2)      ----------->GT1      <----------DOF2 ->AHL20(2)       <---------ARR11(3)  --------->ANAC55(2)      <------ZmHOX2a(1)<---------GLK1(2)   - ->YAB1 --------->ATHB12    <---------MYB52(2)                ----------->GT1<-----------RAV1(2)   --   ttgcatttggtgattagacagatctaaacaactaaggattacttaagacatataagagggagagaggataaatttggtaccagatgctttggggagtaga  1800200                              --------->ABI4(1)                              --------->ORA47(1)                              ------>NtERF2                             ------->GAMYB                             --------->DEAR3(1)                            --------->MYB46(3)                            --------->DEAR3(2)                            --------->ATERF1(1)                                                  <---                            --------->ORA47(2)                                                <------ZmHOX2a(1)                            --------->DEAR4(2)                                          <------NtERF2          --------->ANAC58  <------NtERF2                                              <---------ATERF1(1)          --------->ANAC58 ------>NtERF2                                               ------>NtERF2       ----------->HVH21   <---------ATERF1(1)<----------DOF2                          --------->LBD16      --------->SPL7      <---------ALFIN1   <---------DAG2          <---------ANAC58 --------->ATERF1(2)    <---------SPL7    --------->ANAC58    <---------ALFIN1           <---------ANAC58 <---------ATERF1(2)   <---------DEAR3(2) --------->ANAC58 <xxxxxxxxxxxxxxxxxxxxsmallRNA(se3)             <---------DEAR3(1)  --------------->AtSPL3<-----------HVH21--------->DEAR3(1) --------->At4g35610      --------->ATERF1(1) --------->RAP2.6(3)  --------->ANAC46 ------>NtERF2       <---------DEAR3(1)        <---------LBD16 xxxxxxxxxxxxxxxsmallRNA(fl3)--------->DREB2C(2)          --------->ZAT18            <---------ORA47(1) -------->MYB52(1)  <---------ALFIN1  --------->ANAC58  <---------bZIP60(2)     <---------MYB52(1) --------->HVH21<-----------HVH21     --------->ANAC58 <---------AtMYB61       <---------RAP2.6(3)  <   cttgacggtacgacgcatggtcacacggccaccgcccaagacgcccaccttttggatgaggtcgctggagggcttgagagccgtttggccggcgaaggag  1800300              <-----------RAV1(1)              <---------O2              <---------bZIP60(2)              <---------TGA1a                                                              <------MYB46(1)              ===============================================bZIP_DOF                      ----------         <---------At4g35610                                                               <------MYB83         --------->At4g35610    <---------ICU4                                            --------->ALFIN1       <---------GLK1(1)  --------->YAB1                                                  <---------AtMYB61    <---------MYB46(3)--------->ICU4                                               --------->ATHB12  <xxxxxxxxxxxxxxxxxxxxxxxsmallRNA(si3) <-----------GT1    <------ZmHOX2a(1)      --------->ICU4 ---ZmHOX2a(1)<---------REM1(1)--------->ICU4          ---------->DOF2            <---------YAB1 ---------MYB46(3) ----------------->AGL1         ---------->DOF2        --------->ALFIN1*TSS     ---   gattgttggatagctgatgtggccataatcgtaatctttgtttaactacaatgaaaggaaaggattgaagagagagtgtgagttatgatgggatggtgaa  1800400                                                        <-----------RAV1(2)                                                      <-----------HVH21                                                      <-----------TGA1                                                     <---------TGA1a                                                     --------->bZIP60(2)                                                     --------->ANAC46                                                     --------->ANAC55(1)                                                     --------->ANAC58        <-----------TBP                              --------->ANAC58 <------------CBF                                    --------->TGA1a ->GT1<XXXXXXXXXXXXXXXXXXXXMIR859                    --------->O2 --------->CBF                                       <---------O2 <---------YAB1                -----   accaattgggttttataacagagtgattttcatgttaggggattatcaaatgtacacgtcagagggttctgattcgttgaaagagtttagtttagatttc  1800500                                                       =========================HOX2a_HOX2a                                       <---------At4g35610                                       --------->At4g35610                               <---------AtMYB61       ------>ZmHOX2a(2)                               --------->ALFIN1       <------ZmHOX2a(2)                            --------->ALFIN1         <---------ARR14(2)                            <-----------RAV1(1)      <---------ARR11(3)                            =======================RAV==========================HOX2a_HOX2a                          <---------MYB46(3)         --------->ARR14(2)                       <---------MYB46(3)            --------->ARR11(3)                       -------                      --------->ICU4   ----------->RAV1(2)    <----------DOF2        --------->ZAT6                 <------MYB83  <---------DEAR3(1)    <---------ARR14(3)            <-----------GT1                 <------MYB46(1)<---------MYB46(3)   <---------AGP1           <---------ZAT6 --------           <------ZmHOX2a(1)<---------AtMYB61        --------->ARR14(3)   <---------ARR14(2) <-------     ------>ZmHOX2a(1)<---------YAB1<------NtERF2    <-----------ARR10    --------->ARR14(2) <------- ---->ATHB12   <---------WOX13(1)  ------>NtERF2   ----------->ARR10     <------ZmHOX2a(1)   --------   attggtcctatgaggagattggtaatggttgtggtggtgccatctggcaatggaagatcttgtgcttcagtgagaggatagtgtttaacacttattttat  1800600                                                                     <---------CCA1(2)                                                      <---------ANAC58  --------->TOE1(3) -->ATHB12                                 --------->ARR14(2)     <----------DOF2   <---------YAB1 ->AHL20(2)                               ------>ZmHOX2a(1)    <---------ARR11(3)   --------->ICU4 --AHL20(2)                          --------->YAB1   <---------ANAC58  --------->TOE2(3) --AHL20(1)              <---------YAB1   <---------CCA1(2) <----------DOF2       --------->REM1(2) ->AHL20(1)       <----------DOF2   <---------ATHB12  <---------ANAC46  --------->YAB1           ----   tggattgttttttggctattctttgtgatgatatatcaataatcctatcttcgattgcgtttctttatcttttatcttaaaccgtgatgactactcgacc  1800700                                                                                     <---------AHL20(2)                                                                                     --------->AHL20(2)                                                                            <------MYB83                                                                            <------MYB46(1)                                                                            ----------->GT1                                          <---------AHL20(2)               <---------AtMYB61                                          --------->AHL20(2)          <---------TOE2(3)<-----------GT1                           <---------MYB52(1) <-----------GT1 ------->TEIL<---------WOX13(1)             --------->AHL20(2)         <----------DOF2      <---------AtLEC2   --------->AHL20(2) ------->HVH21<---------AHL20(2)        --------->TOE2(3)   <-------TEIL--------->ATHB12         <---   agaccggtttgaacataaaatttcaaaccgtgggttttaaaactttaattacaaaacaaaaatgcatgtattatggattggtttaaattaaactatacga  1800800                          <---------YAB1                 --------->LBD16                                                      --------->ARR14(1)                <---------HSFB2a(2)                                                 --------->ATHB12               ------>ZmHOX2a(2)                                                   <---------YAB1              <------ZmHOX2a(2)                                                  <---------AtLEC2             <---------ARR14(2)                                                  <---------ANAC58             --------->ARR14(2)                                                  <---------ANAC58             --------->ARR11(3)                                              <---------ANAC58             --------->GLK1(2)    --------->MYB52(2)                         <---------ANAC58     --- ------YAB1 <------ZmHOX2a(1)<---------YAB1         <----------DOF2    <---------AHL20(2)     <------   tgatatgtactggaggatccagaggtctatgattcttagttgctattagagatgctttgtttcttcactacatattatttcttgcatgattcgctatgtc  1800900  Previous    Next  AGI:  At2g05070.1    Description:  LHCB2.2 (Photosystem II light harvesting complex gene 2.2); chlorophyll binding. similar to LHCB2.1 (Photosystem II light harvesting complex gene 2.1), chlorophyll binding [Arabidopsis thaliana] (TAIR:AT2G05100.1); similar to light harvesting chlorophyll A/B binding protein [Prunus persica] (GB:AAC34983.1); contains InterPro domain Chlorophyll A-B binding protein; (InterPro:IPR001344) Range:  from: 1799231    to: 1800389    Orientation: Reverse Links:  TAIR  MIPS      Please cite the corresponding publications when using AthaMap.
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