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Chromosome 1
Chromosome 2
Chromosome 3
Chromosome 4
Chromosome 5
Position
Exon region
Intron region
UTR region
AGI
% Restriction to highly conserved TF binding sites (0-100)
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1 10 20 30 40 50 60 70 80 90 100
------>
MYB46(1)
=======================
RAV
<xxxxxxxxxxxxxxxxxxxxxx
smallRNA(s2)
------>
MYB83
----------->
RAV1(1)
<xxxxxxxxxxxxxxxxxxxxxxx
smallRNA(se3)
--------->
MYB46(3)
<---------
At4g35610
<---------
MYB55(2)
--------->
At4g35610
--------->
ANAC46
---------->
DOF2
<---------
ZAT2
--------->
ANAC58
<---------
ANAC46
--------->
ZAT2
---------
--------->
ANAC58
<---------
At4g35610
<---------
WRKY38(1)
<---------
<---------
ZAT18
--------->
At4g35610
<---------
WRKY12
--------->
ALFIN1
--------->
ZAT14
<-----------
RAV1(1)
<-----------
ARR10
<-----------
RAV1(2)
<-----------
HVH21
<---------
ZAT14
<xxxxxxxxxxxxxxxxxxxxxxxxx
smallRNA(si3)
<-----------
HVH21
<---------
DEAR3(1)
--------->
ZAT18
----------->
RAV1(2)
--------->
MYB52(1)
--------->
LBD16
<---------
At4g35610
----->
LBD16
<---------
At4g35610
<---------
At4g35610
<---------
LBD16
<---------
ZAT14
gagagcacccaacatagcccatctgctgtggattacttcaagctcacggttcttagcgaatgtctccgggtcagccgagagtccagcggtgtcccagccg
1800000
<-----------
GT1
--------->
LBD16
<---------
ANAC55(2)
<------
--------->
LBD16
--------->
ANAC55(2)
--------->
HSFB2a(2)
<------
<---------
LBD16
--------->
MYB59
<---------
HSFB2a(2)
-------
<---------
LBD16
<---------
MYB52(1)
--------->
LBD16
<-------
>
ANAC46
--------->
ARR14(2)
<---------
ANAC46
--------
--
RAV1(2)
<---------
ARR14(2)
<---------
DEAR3(1)
--------->
SPL7
--------
tagtctccggggtattctccagttaagtaagacggtgtgttctccgagaatggtcccaagtacttgggacggtctggtccatac
ctgttacaaaattata
1800100
<---------
ICU4
<---------
TOE1(3)
<---------
TOE2(3)
=====================
HOX2a_HOX2a
<------
ZmHOX2a(2)
<---------
ARR14(2)
<---------
MYB46(3)
--------->
MYB52(1)
<------
MYB83
--------->
ARR11(3)
<------
MYB46(1)
------>
ZmHOX2a(2)
----------->
GT1
====================
HOX2a_HOX2a
---
AHL20(2)
<-----------
ARR10
<------
MYB46(1)
---
AHL20(1)
<---------
AGP1
<------
ZmHOX2a(1)
<------
MYB83
<xxxxxxxxxx
-->
AHL20(1)
--------->
AGP1
--------->
ICU4
--------->
MYB59
<---------
LBD16
--
AHL20(2)
--------->
ARR14(2)
<---------
ANAC55(2)
----------->
GT1
<----------
DOF2
->
AHL20(2)
<---------
ARR11(3)
--------->
ANAC55(2)
<------
ZmHOX2a(1)
<---------
GLK1(2)
-
->
YAB1
--------->
ATHB12
<---------
MYB52(2)
----------->
GT1
<-----------
RAV1(2)
--
ttgcatttggtgattagacagatctaaacaactaaggattacttaagacatataagagggagagaggataaatttggtac
cagatgctttggggagtaga
1800200
--------->
ABI4(1)
--------->
ORA47(1)
------>
NtERF2
------->
GAMYB
--------->
DEAR3(1)
--------->
MYB46(3)
--------->
DEAR3(2)
--------->
ATERF1(1)
<---
--------->
ORA47(2)
<------
ZmHOX2a(1)
--------->
DEAR4(2)
<------
NtERF2
--------->
ANAC58
<------
NtERF2
<---------
ATERF1(1)
--------->
ANAC58
------>
NtERF2
------>
NtERF2
----------->
HVH21
<---------
ATERF1(1)
<----------
DOF2
--------->
LBD16
--------->
SPL7
<---------
ALFIN1
<---------
DAG2
<---------
ANAC58
--------->
ATERF1(2)
<---------
SPL7
--------->
ANAC58
<---------
ALFIN1
<---------
ANAC58
<---------
ATERF1(2)
<---------
DEAR3(2)
--------->
ANAC58
<xxxxxxxxxxxxxxxxxxxx
smallRNA(se3)
<---------
DEAR3(1)
--------------->
AtSPL3
<-----------
HVH21
--------->
DEAR3(1)
--------->
At4g35610
--------->
ATERF1(1)
--------->
RAP2.6(3)
--------->
ANAC46
------>
NtERF2
<---------
DEAR3(1)
<---------
LBD16
xxxxxxxxxxxxxxx
smallRNA(fl3)
--------->
DREB2C(2)
--------->
ZAT18
<---------
ORA47(1)
-------->
MYB52(1)
<---------
ALFIN1
--------->
ANAC58
<---------
bZIP60(2)
<---------
MYB52(1)
--------->
HVH21
<-----------
HVH21
--------->
ANAC58
<---------
AtMYB61
<---------
RAP2.6(3)
<
cttgacggtacgacgcatggtcacacggccaccgcccaagacgcccaccttttggatgaggtcgctggagggcttgagagccgtttggccggcgaaggag
1800300
<-----------
RAV1(1)
<---------
O2
<---------
bZIP60(2)
<---------
TGA1a
<------
MYB46(1)
===============================================
bZIP_DOF
----------
<---------
At4g35610
<------
MYB83
--------->
At4g35610
<---------
ICU4
--------->
ALFIN1
<---------
GLK1(1)
--------->
YAB1
<---------
AtMYB61
<---------
MYB46(3)
--------->
ICU4
--------->
ATHB12
<xxxxxxxxxxxxxxxxxxxxxxx
smallRNA(si3)
<-----------
GT1
<------
ZmHOX2a(1)
--------->
ICU4
---
ZmHOX2a(1)
<---------
REM1(1)
--------->
ICU4
---------->
DOF2
<---------
YAB1
---------
MYB46(3)
----------------->
AGL1
---------->
DOF2
--------->
ALFIN1
*
TSS
---
gattgttggatagctgatgtggccat
aatcgtaatctttgtttaactacaatgaaaggaaaggattgaagagagagtgtgagttatgat
gggatggtgaa
1800400
<-----------
RAV1(2)
<-----------
HVH21
<-----------
TGA1
<---------
TGA1a
--------->
bZIP60(2)
--------->
ANAC46
--------->
ANAC55(1)
--------->
ANAC58
<-----------
TBP
--------->
ANAC58
<------------
CBF
--------->
TGA1a
->
GT1
<XXXXXXXXXXXXXXXXXXXX
MIR859
--------->
O2
--------->
CBF
<---------
O2
<---------
YAB1
-----
accaattgggttttataacagagtgattttcatgttaggggattatcaaatgtacacgtcagagggttctgattcgttgaaagagtttagtttagatttc
1800500
=========================
HOX2a_HOX2a
<---------
At4g35610
--------->
At4g35610
<---------
AtMYB61
------>
ZmHOX2a(2)
--------->
ALFIN1
<------
ZmHOX2a(2)
--------->
ALFIN1
<---------
ARR14(2)
<-----------
RAV1(1)
<---------
ARR11(3)
=======================
RAV
==========================
HOX2a_HOX2a
<---------
MYB46(3)
--------->
ARR14(2)
<---------
MYB46(3)
--------->
ARR11(3)
-------
--------->
ICU4
----------->
RAV1(2)
<----------
DOF2
--------->
ZAT6
<------
MYB83
<---------
DEAR3(1)
<---------
ARR14(3)
<-----------
GT1
<------
MYB46(1)
<---------
MYB46(3)
<---------
AGP1
<---------
ZAT6
--------
<------
ZmHOX2a(1)
<---------
AtMYB61
--------->
ARR14(3)
<---------
ARR14(2)
<-------
------>
ZmHOX2a(1)
<---------
YAB1
<------
NtERF2
<-----------
ARR10
--------->
ARR14(2)
<-------
---->
ATHB12
<---------
WOX13(1)
------>
NtERF2
----------->
ARR10
<------
ZmHOX2a(1)
--------
attggtcctatgaggagattggtaatggttgtggtggtgccatctggcaatggaagatcttgtgcttcagtgagaggatagtgtttaacacttattttat
1800600
<---------
CCA1(2)
<---------
ANAC58
--------->
TOE1(3)
-->
ATHB12
--------->
ARR14(2)
<----------
DOF2
<---------
YAB1
->
AHL20(2)
------>
ZmHOX2a(1)
<---------
ARR11(3)
--------->
ICU4
--
AHL20(2)
--------->
YAB1
<---------
ANAC58
--------->
TOE2(3)
--
AHL20(1)
<---------
YAB1
<---------
CCA1(2)
<----------
DOF2
--------->
REM1(2)
->
AHL20(1)
<----------
DOF2
<---------
ATHB12
<---------
ANAC46
--------->
YAB1
----
tggattgttttttggctattctttgtgatgatatatcaataatcctatcttcgattgcgtttctttatcttttatcttaaaccgtgatgactactcgacc
1800700
<---------
AHL20(2)
--------->
AHL20(2)
<------
MYB83
<------
MYB46(1)
----------->
GT1
<---------
AHL20(2)
<---------
AtMYB61
--------->
AHL20(2)
<---------
TOE2(3)
<-----------
GT1
<---------
MYB52(1)
<-----------
GT1
------->
TEIL
<---------
WOX13(1)
--------->
AHL20(2)
<----------
DOF2
<---------
AtLEC2
--------->
AHL20(2)
------->
HVH21
<---------
AHL20(2)
--------->
TOE2(3)
<-------
TEIL
--------->
ATHB12
<---
agaccggtttgaacataaaatttcaaaccgtgggttttaaaactttaattacaaaacaaaaatgcatgtattatggattggtttaaattaaactatacga
1800800
<---------
YAB1
--------->
LBD16
--------->
ARR14(1)
<---------
HSFB2a(2)
--------->
ATHB12
------>
ZmHOX2a(2)
<---------
YAB1
<------
ZmHOX2a(2)
<---------
AtLEC2
<---------
ARR14(2)
<---------
ANAC58
--------->
ARR14(2)
<---------
ANAC58
--------->
ARR11(3)
<---------
ANAC58
--------->
GLK1(2)
--------->
MYB52(2)
<---------
ANAC58
---
------
YAB1
<------
ZmHOX2a(1)
<---------
YAB1
<----------
DOF2
<---------
AHL20(2)
<------
tgatatgtactggaggatccagaggtctatgattcttagttgctattagagatgctttgtttcttcactacatattatttcttgcatgattcgctatgtc
1800900
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AGI:
At2g05070.1
Description:
LHCB2.2 (Photosystem II light harvesting complex gene 2.2); chlorophyll binding. similar to LHCB2.1 (Photosystem II light harvesting complex gene 2.1), chlorophyll binding [Arabidopsis thaliana] (TAIR:AT2G05100.1); similar to light harvesting chlorophyll A/B binding protein [Prunus persica] (GB:AAC34983.1); contains InterPro domain Chlorophyll A-B binding protein; (InterPro:IPR001344)
Range:
from: 1799231
to: 1800389
Orientation: Reverse
Links:
TAIR
MIPS
Please cite the corresponding
publications
when using AthaMap.