Home Tools   - Search   - Colocalization   - Gene Analysis   - Gene Identification   - Small RNA Targets   - MicroRNA Targets Description Documentation Citations Downloads Publications History Contact Links Disclaimer	Search   Chromosome 1 Chromosome 2 Chromosome 3 Chromosome 4 Chromosome 5    Position Exon region Intron region UTR region AGI % Restriction to highly conserved TF binding sites (0-100)   Go to graphical and table display  1        10        20        30        40        50        60        70        80        90        100                                --------->YAB1                           --------->YAB1              --------------->AtSPL8                           <---------ICU4              <---------------AtSPL8                          <---------YAB1            <---------ARR14(2)                       <-------                      <---------WOX13(1)            --------->ARR14(2)                <----------DOF2           ------>ZmHOX2a(1)  <<<<<<<<<<<<<<<<<LFY  --------->ARR11(3)             --------->GLK1(2)          <---------YAB1--------->YAB1             <------ZmHOX2a(1)          <---------ANAC58 ----------->RAV1(1)--------->ATHB12          <------ZmHOX2a(2)               <---------ANAC58      - -------->MYB46(3) <---------YAB1     --------->ARR14(2)                      <---------ANAC46  <----   caacaacaaattcctattgttttcattgataataacaatggattcacgatcgaggaacttgtacaataaccagtaatcttgcgagtttctttttttttcc  959200                                                                                                 <---                                                                                                -----                                                                                     <--------HAHB4                                                                                     -------->HAHB4                                                                                     <--------ATHB1                                                                                     --------->ATHB51                                                                                     --------->YAB1                                                                                     <---------ICU4                                                                                    --------->AHL20(2)                                                                                  --------->YAB1<----                                                                                 <---------AHL20(2)                                                                                 --------->AHL20(2)                                                                                --------->AHL20(2)                                                                                <---------AHL20(2)                                                                             --------->AHL20(1) <----                                                                             <---------AHL20(2) -----                                                                             --------->AHL20(2) -----                                                                            <---------AHL20(2)  -----                                                                            --------->AHL20(2)  -----      --------->YAB1                                                     <---------ICU4         -----      -------->HAHB4                                                     <--------HAHB4        <-----      <---------ICU4                                                     --------->ATHB51     <------     <---------YAB1                                                     <---------YAB1  <---------AHL20(2)   --------->YAB1            <---------TOE1(3)                          --------->ICU4  --------->AHL20(2) ----GT1                     <---------TOE2(3)                        --------->YAB1--------->ICU4 -------->YAB1 --------->AHL20(2)                  --------->GLK1(2) <---------YAB1 <---------YAB1 -----AtLEC2   <---------AHL20(2)        <---------GLK1(2)         <---------CCA1(2)<---------ATHB51   atgaataataataccaaaaaattagatgtttaaggttttgttagattctacataatctaatatgctcttatatcataattaaattaataattaatcccac  959300   --------->YAB1 --------HVH21 ---->O2 -----O2 -----TGA1a                                                                                     <---- ---->TGA1a                                                                                     ----- ---->ANAC46                                                           ----------->GT1          ----- ---->ANAC58                                                      ---------->DOF2               <---- ---->bZIP60(2)                                            --------->ANAC58               ---------->DOF2 ---->ANAC58                                               --------->ANAC46         <------------CBF ----TOE1(2)                            <---------AtLEC2<---------ATHB12          <---------AHL20(1) ---ALFIN1                ----------->GT1  ----------->GT1 --------->ANAC58       --------->ARR11(3)   gtcaaacaaaattagaagattacagaaaatgttataaactttgcatcgaaaaatacaaatcaaggaacaaaaggagtatattagtatattgctaaagaag  959400             <---------CCA1(2)         ----------->TBP         --------->AHL20(2)        --------->AHL20(1)        <---------AHL20(1)       --------->AHL20(2) --------->HSFC1(1) <---------HSFC1(1)                        --------->ARR14(2) --------->HSFB2a(2)           ----------->GT1                                                      < <---------HSFB2a(2)        --------->TOE2(3)                                                       - -----HSFB2a(1)       --------->ANAC46     <---------ARR14(2)      <----------DOF2             ------ ---->HSFB2a(1)     --------->ZAT6        <------ZmHOX2a(1) ------>ZmHOX2a(1)  ----------->GT1------- ---->HSFC1(2)<---------ARR11(3)    <---------YAB1         --------->TOE2(3)  ----------------------- -----HSFC1(2)--------->ARR11(3)   --------->AHL20(2)   <-----------GT1     ---------->DOF2   -------   tttctagaaatatatatatcttccactaaaccctagttaaaataggatttgagtctattttccttatttctttgtgagaaaaggaaacaacatgaaaccc  959500                                                --------->AHL20(2)       ----------->GT1                          ----------->TBP     <------------CBF                         --------------->AGL15 ---------ARR11(3)                            <---------HSFB2a(2) -------->ARR11(3)                            --------->HSFB2a(2)--------->MYB46(3) ------>CBF                       ------->TEIL<---------------AGL15                              <--- -->ANAC58               <------------CBF    <-----------------AGL3                           ------- ->ANAC81             ------------>CBF       ----------------->AGL3         --------->YAB1   -------- -->ANAC58  ---------->DOF2      <---------GLK1(2)              ------------>CBF             --------   aatatctaattgtgaaaaggaaaacacaattgactgaatcttagggttctataaatagactgattcaacaatctctcatcaaaatttctcttcacaaaca  959600                           --------->ANAC58                           --------->ANAC58                         ---------->DOF2                                       ------->TEIL                      --------->ANAC58                                         --------->GLK1(2)    <                      --------->ANAC58                                     <---------------------WRI1 ---------CBF         --------->ANAC46                            --------->ZAT2                   <- ----->CBF           ------->GAMYB               ---------->DOF2 --------->ANAC58      <---------TOE2(3) ->ANAC58    <---------ANAC58           <---------ARR11(3)       --------->ANAC58      <---------TOE1(3) ->ANAC58    <---------ANAC58      ------------>CBF  <---------GLK1(2)    ----------->GT1          --   attgactcttgtttttcgttcaacacacaaagcaaaaaacaatgtcttcgaaaaagattgtgttgacaagctccgatggtgaatctttcaaggttgaaga  959700                                                                                             --------                          <------ZmHOX2a(1)                                                  --------                      --------->TOE1(2)                                                      --------                     ------>ZmHOX2a(2)                                                   --------->GLK1(2)                    <------ZmHOX2a(2)                                                   --------->ARR14(2)                    =============HOX2a_HOX2a                                            <---------GLK1(2)       --------->ANAC58 --------->SPL7                                                ----------->ARR10       --------->ANAC58 <---------TOE1(2)                                         --------->LBD16    <------NtERF2  <---------ARR11(3)                                           <---------LBD16 ---------MYB46(3) --------->ARR14(2)                    --------->YAB1        --------->MYB52(1) --------AtMYB61   --------->ARR11(3)          --------->ZAT18                 <---------DOF5.7(2)<-- ------->ALFIN1    <---------ARR14(2)          <---------ZAT14               --------->DOF5.7(2)  <--   agtggtggcaagaaaactgcagatcgtaggacacattatcgaagacgactgtgctacaaacaaaatccctattccaaacgttaccggagagattctcgcc  959800                                              --------->ALFIN1                                              <---------ANAC46                                           --------->ALFIN1                                         <---------ANAC46                                         <---------ANAC58                                         <---------ANAC55(2)                                         --------->ANAC55(2)                                         <---------ANAC55(1)                                         <---------ANAC58                                         <---------bZIP60(1)                                         --------->O2                                         <---------bZIP60(2)                                         =======================================bZIP_DOF                                         <---------O2                                         --------->bZIP60(1)                        ------->MYC3     <---------TGA1a      <---------------AtSPL3            ----------->STF1 ->ANAC46               <-------MYC3   <---------TGA2(2)           --------->ANAC46 ->ANAC58          --------->CCA1(2)  ----------->TGA1       --------->YAB1                        >> ->ANAC58       --------->ANAC58    <---------ICU4         ------->TEIL   ----------->GT1    <------NtERF2 -------TOE1(3) --------->ANAC58    --------->YAB1  --------->ANAC58    ----------->GT1    <---------DEAR3(1) -------TOE2(3) --------->ANAC46   --------->ICU4   --------->ANAC58 ---------->DOF2      <------ZmHOX2a(1)   aaggttatcgagtactgcaagaaacacgttgaagacgatgatgacgtggtggagacgcatgaatcatcgacgaaaggagataaaacagttgaggaggcga  959900                       ----------->RAV1(2)                      --------->SPL7                      ------->TEIL                <---------At4g35610                    <---------SPL7                --------->At4g35610                   --------->RAP2.6(2)            <---------ZAT2                  --------------->AtSPL3      <---------REM1(1)                  --------------->AtSPL8   --------->ICU4               --------->ALFIN1   ----------->HVH21   <---------TOE2(3)             ======================RAV <------ZmHOX2a(1)<------ZmHOX2a(1)    --------->ATHB12             <-----------RAV1(1)  ------->GAMYB   --------->ZAT2     --------->GLK1(2)             <-             <---------bZIP60(2)--------->At4g35610   XXXXXXXXXXXXXXXXXXXX>MIR854A-E         <-------TEIL >>>>>>>TBF1 <---------REM1(1) --------->MYB52(1)------->TEIL    <------ZmHOX2a(1)      ---------->DOF2   agaagaagcctgatgatgtggccgtacctgaatcaactgaaggagatgatgaagctgaggataagaaggagaagcttaatgagtgggatgcaaagttcat  960000                                <---------YAB1                             <---------YAB1                             --------->ICU4                     ------>ZmHOX2a(2)                   --------->ARR14(2)                   <---------ARR14(2)                   --------->ARR14(3)                   <---------ARR14(3)                                    ------>ZmHOX2a(2)   --------->GLK1(1)<------ZmHOX2a(2)                                   <---------GLK1(1) ==========================HOX2a_HOX2a                           <----------DOF2 <------ZmHOX2a(1) <---------ARR11(3)            --------->TOE2(3)     --------->ARR11(3)          <- ===========================HOX2a_HOX2a --------->At4g35610   --------->ARR11(3)              <------ --------TOE2(3)   --------->ARR11(3)   <---------At4g35610   <---------ARR11(3)     <---------ARR11(3)   gaaggatttcgatattaagacgatcttcgacattattctggctgctaactatctcaacgtccaaggtctttttgatctctgtagcaagaccattgcagat  960100  Previous    Next  AGI:  At2g03150.1    Description:  EMB1579 (EMBRYO DEFECTIVE 1579); binding. similar to hypothetical protein OsJ_020850 [Oryza sativa (japonica cultivar-group)] (GB:EAZ37367.1); similar to hypothetical protein OsI_022585 [Oryza sativa (indica cultivar-group)] (GB:EAZ01353.1); contains InterPro domain Armadillo-type fold; (InterPro:IPR016024); contains InterPro domain EF-Hand type; (InterPro:IPR011992); contains InterPro domain Calcium-binding EF-hand; (InterPro:IPR002048) Range:  from: 951930    to: 959185    Orientation: Forward Links:  TAIR  MIPS    AGI:  At2g03160.1    Description:  ASK19 (ARABIDOPSIS SKP1-LIKE 19); ubiquitin-protein ligase. similar to ASK15 (ARABIDOPSIS SKP1-LIKE 15), ubiquitin-protein ligase [Arabidopsis thaliana] (TAIR:AT3G25650.1); similar to kinetochore protein [Brassica juncea] (GB:BAB85606.1); contains InterPro domain SKP1 component, POZ; (InterPro:IPR016073); contains InterPro domain SKP1 component; (InterPro:IPR001232); contains InterPro domain BTB/POZ fold; (InterPro:IPR011333); contains InterPro domain E3 ubiquitin ligase, SCF complex, Skp subunit (InterPro:IPR016897); contains InterPro domain SKP1 component, dimerisation; (InterPro:IPR016072) Range:  from: 959642    to: 960244    Orientation: Forward Links:  TAIR  MIPS      Please cite the corresponding publications when using AthaMap.
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