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Chromosome 1
Chromosome 2
Chromosome 3
Chromosome 4
Chromosome 5
Position
Exon region
Intron region
UTR region
AGI
% Restriction to highly conserved TF binding sites (0-100)
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1 10 20 30 40 50 60 70 80 90 100
--------->
YAB1
--------->
YAB1
--------------->
AtSPL8
<---------
ICU4
<---------------
AtSPL8
<---------
YAB1
<---------
ARR14(2)
<-------
<---------
WOX13(1)
--------->
ARR14(2)
<----------
DOF2
------>
ZmHOX2a(1)
<<<<<<<<<<<<<<<<<
LFY
--------->
ARR11(3)
--------->
GLK1(2)
<---------
YAB1
--------->
YAB1
<------
ZmHOX2a(1)
<---------
ANAC58
----------->
RAV1(1)
--------->
ATHB12
<------
ZmHOX2a(2)
<---------
ANAC58
-
-------->
MYB46(3)
<---------
YAB1
--------->
ARR14(2)
<---------
ANAC46
<----
caacaacaaattcctattgttttcattgataataacaatggattcacgatcgaggaacttgtacaataaccagtaatcttgcgag
tttctttttttttcc
959200
<---
-----
<--------
HAHB4
-------->
HAHB4
<--------
ATHB1
--------->
ATHB51
--------->
YAB1
<---------
ICU4
--------->
AHL20(2)
--------->
YAB1
<----
<---------
AHL20(2)
--------->
AHL20(2)
--------->
AHL20(2)
<---------
AHL20(2)
--------->
AHL20(1)
<----
<---------
AHL20(2)
-----
--------->
AHL20(2)
-----
<---------
AHL20(2)
-----
--------->
AHL20(2)
-----
--------->
YAB1
<---------
ICU4
-----
-------->
HAHB4
<--------
HAHB4
<-----
<---------
ICU4
--------->
ATHB51
<------
<---------
YAB1
<---------
YAB1
<---------
AHL20(2)
--------->
YAB1
<---------
TOE1(3)
--------->
ICU4
--------->
AHL20(2)
----
GT1
<---------
TOE2(3)
--------->
YAB1
--------->
ICU4
-------->
YAB1
--------->
AHL20(2)
--------->
GLK1(2)
<---------
YAB1
<---------
YAB1
-----
AtLEC2
<---------
AHL20(2)
<---------
GLK1(2)
<---------
CCA1(2)
<---------
ATHB51
atgaataataataccaaaaaattagatgtttaaggttttgttagattctacataatctaatatgctcttatatcataattaaattaataattaatcccac
959300
--------->
YAB1
--------
HVH21
---->
O2
-----
O2
-----
TGA1a
<----
---->
TGA1a
-----
---->
ANAC46
----------->
GT1
-----
---->
ANAC58
---------->
DOF2
<----
---->
bZIP60(2)
--------->
ANAC58
---------->
DOF2
---->
ANAC58
--------->
ANAC46
<------------
CBF
----
TOE1(2)
<---------
AtLEC2
<---------
ATHB12
<---------
AHL20(1)
---
ALFIN1
----------->
GT1
----------->
GT1
--------->
ANAC58
--------->
ARR11(3)
gtcaaacaaaattagaagattacagaaaatgttataaactttgcatcgaaaaatacaaatcaaggaacaaaaggagtatattagtatattgctaaagaag
959400
<---------
CCA1(2)
----------->
TBP
--------->
AHL20(2)
--------->
AHL20(1)
<---------
AHL20(1)
--------->
AHL20(2)
--------->
HSFC1(1)
<---------
HSFC1(1)
--------->
ARR14(2)
--------->
HSFB2a(2)
----------->
GT1
<
<---------
HSFB2a(2)
--------->
TOE2(3)
-
-----
HSFB2a(1)
--------->
ANAC46
<---------
ARR14(2)
<----------
DOF2
------
---->
HSFB2a(1)
--------->
ZAT6
<------
ZmHOX2a(1)
------>
ZmHOX2a(1)
----------->
GT1
-------
---->
HSFC1(2)
<---------
ARR11(3)
<---------
YAB1
--------->
TOE2(3)
-----------------------
-----
HSFC1(2)
--------->
ARR11(3)
--------->
AHL20(2)
<-----------
GT1
---------->
DOF2
-------
tttctagaaatatatatatcttccactaaaccctagttaaaataggatttgagtctattttccttatttctttgtgagaaaaggaaacaacatgaaaccc
959500
--------->
AHL20(2)
----------->
GT1
----------->
TBP
<------------
CBF
--------------->
AGL15
---------
ARR11(3)
<---------
HSFB2a(2)
-------->
ARR11(3)
--------->
HSFB2a(2)
--------->
MYB46(3)
------>
CBF
------->
TEIL
<---------------
AGL15
<---
-->
ANAC58
<------------
CBF
<-----------------
AGL3
-------
->
ANAC81
------------>
CBF
----------------->
AGL3
--------->
YAB1
--------
-->
ANAC58
---------->
DOF2
<---------
GLK1(2)
------------>
CBF
--------
aatatctaattgtgaaaaggaaaacacaattgactgaatcttagggttctataaatagactgattcaacaatctctcatcaaaatttctcttcacaaaca
959600
--------->
ANAC58
--------->
ANAC58
---------->
DOF2
------->
TEIL
--------->
ANAC58
--------->
GLK1(2)
<
--------->
ANAC58
<---------------------
WRI1
---------
CBF
--------->
ANAC46
--------->
ZAT2
<-
----->
CBF
------->
GAMYB
---------->
DOF2
--------->
ANAC58
<---------
TOE2(3)
->
ANAC58
<---------
ANAC58
<---------
ARR11(3)
--------->
ANAC58
<---------
TOE1(3)
->
ANAC58
<---------
ANAC58
------------>
CBF
<---------
GLK1(2)
----------->
GT1
--
attgactcttgtttttcgttcaacacacaaagcaaaaaaca
atgtcttcgaaaaagattgtgttgacaagctccgatggtgaatctttcaaggttgaaga
959700
--------
<------
ZmHOX2a(1)
--------
--------->
TOE1(2)
--------
------>
ZmHOX2a(2)
--------->
GLK1(2)
<------
ZmHOX2a(2)
--------->
ARR14(2)
=============
HOX2a_HOX2a
<---------
GLK1(2)
--------->
ANAC58
--------->
SPL7
----------->
ARR10
--------->
ANAC58
<---------
TOE1(2)
--------->
LBD16
<------
NtERF2
<---------
ARR11(3)
<---------
LBD16
---------
MYB46(3)
--------->
ARR14(2)
--------->
YAB1
--------->
MYB52(1)
--------
AtMYB61
--------->
ARR11(3)
--------->
ZAT18
<---------
DOF5.7(2)
<--
------->
ALFIN1
<---------
ARR14(2)
<---------
ZAT14
--------->
DOF5.7(2)
<--
agtggtggcaagaaaactgcagatcgtaggacacattatcgaagacgactgtgctacaaacaaaatccctattccaaacgttaccggagagattctcgcc
959800
--------->
ALFIN1
<---------
ANAC46
--------->
ALFIN1
<---------
ANAC46
<---------
ANAC58
<---------
ANAC55(2)
--------->
ANAC55(2)
<---------
ANAC55(1)
<---------
ANAC58
<---------
bZIP60(1)
--------->
O2
<---------
bZIP60(2)
=======================================
bZIP_DOF
<---------
O2
--------->
bZIP60(1)
------->
MYC3
<---------
TGA1a
<---------------
AtSPL3
----------->
STF1
->
ANAC46
<-------
MYC3
<---------
TGA2(2)
--------->
ANAC46
->
ANAC58
--------->
CCA1(2)
----------->
TGA1
--------->
YAB1
>>
->
ANAC58
--------->
ANAC58
<---------
ICU4
------->
TEIL
----------->
GT1
<------
NtERF2
-------
TOE1(3)
--------->
ANAC58
--------->
YAB1
--------->
ANAC58
----------->
GT1
<---------
DEAR3(1)
-------
TOE2(3)
--------->
ANAC46
--------->
ICU4
--------->
ANAC58
---------->
DOF2
<------
ZmHOX2a(1)
aaggttatcgagtactgcaagaaacacgttgaagacgatgatgacgtggtggagacgcatgaatcatcgacgaaaggagataaaacagttgaggaggcga
959900
----------->
RAV1(2)
--------->
SPL7
------->
TEIL
<---------
At4g35610
<---------
SPL7
--------->
At4g35610
--------->
RAP2.6(2)
<---------
ZAT2
--------------->
AtSPL3
<---------
REM1(1)
--------------->
AtSPL8
--------->
ICU4
--------->
ALFIN1
----------->
HVH21
<---------
TOE2(3)
======================
RAV
<------
ZmHOX2a(1)
<------
ZmHOX2a(1)
--------->
ATHB12
<-----------
RAV1(1)
------->
GAMYB
--------->
ZAT2
--------->
GLK1(2)
<-
<---------
bZIP60(2)
--------->
At4g35610
XXXXXXXXXXXXXXXXXXXX>
MIR854A-E
<-------
TEIL
>>>>>>>
TBF1
<---------
REM1(1)
--------->
MYB52(1)
------->
TEIL
<------
ZmHOX2a(1)
---------->
DOF2
agaagaagcctgatgatgtggccgtacctgaatcaactgaaggagatgatgaagctgaggataagaaggagaagcttaatgagtgggatgcaaagttcat
960000
<---------
YAB1
<---------
YAB1
--------->
ICU4
------>
ZmHOX2a(2)
--------->
ARR14(2)
<---------
ARR14(2)
--------->
ARR14(3)
<---------
ARR14(3)
------>
ZmHOX2a(2)
--------->
GLK1(1)
<------
ZmHOX2a(2)
<---------
GLK1(1)
==========================
HOX2a_HOX2a
<----------
DOF2
<------
ZmHOX2a(1)
<---------
ARR11(3)
--------->
TOE2(3)
--------->
ARR11(3)
<-
===========================
HOX2a_HOX2a
--------->
At4g35610
--------->
ARR11(3)
<------
--------
TOE2(3)
--------->
ARR11(3)
<---------
At4g35610
<---------
ARR11(3)
<---------
ARR11(3)
gaaggatttcgatattaagacgatcttcgacattattctggctgctaactatctcaacgtccaaggtctttttgatctctgtagcaagaccattgcagat
960100
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AGI:
At2g03150.1
Description:
EMB1579 (EMBRYO DEFECTIVE 1579); binding. similar to hypothetical protein OsJ_020850 [Oryza sativa (japonica cultivar-group)] (GB:EAZ37367.1); similar to hypothetical protein OsI_022585 [Oryza sativa (indica cultivar-group)] (GB:EAZ01353.1); contains InterPro domain Armadillo-type fold; (InterPro:IPR016024); contains InterPro domain EF-Hand type; (InterPro:IPR011992); contains InterPro domain Calcium-binding EF-hand; (InterPro:IPR002048)
Range:
from: 951930
to: 959185
Orientation: Forward
Links:
TAIR
MIPS
AGI:
At2g03160.1
Description:
ASK19 (ARABIDOPSIS SKP1-LIKE 19); ubiquitin-protein ligase. similar to ASK15 (ARABIDOPSIS SKP1-LIKE 15), ubiquitin-protein ligase [Arabidopsis thaliana] (TAIR:AT3G25650.1); similar to kinetochore protein [Brassica juncea] (GB:BAB85606.1); contains InterPro domain SKP1 component, POZ; (InterPro:IPR016073); contains InterPro domain SKP1 component; (InterPro:IPR001232); contains InterPro domain BTB/POZ fold; (InterPro:IPR011333); contains InterPro domain E3 ubiquitin ligase, SCF complex, Skp subunit (InterPro:IPR016897); contains InterPro domain SKP1 component, dimerisation; (InterPro:IPR016072)
Range:
from: 959642
to: 960244
Orientation: Forward
Links:
TAIR
MIPS
Please cite the corresponding
publications
when using AthaMap.