Home Tools   - Search   - Colocalization   - Gene Analysis   - Gene Identification   - Small RNA Targets   - MicroRNA Targets Description Documentation Citations Downloads Publications History Contact Links Disclaimer	Search   Chromosome 1 Chromosome 2 Chromosome 3 Chromosome 4 Chromosome 5    Position Exon region Intron region UTR region AGI % Restriction to highly conserved TF binding sites (0-100)   Go to graphical and table display  1        10        20        30        40        50        60        70        80        90        100   ------GAMYB -------ANAC58 -------ANAC58                                                            <------ZmHOX2a(1) -------ANAC46                                                        ---------->DOF2 -GAMYB  <-----------RAV1(2)                                   <---------MYB46(3) --MYB46(3)                                             xxxxxxxxxxxxxxxxxxxxxxx>smallRNA(se3) ->MYB111(1)                              --------------->AtSPL3<-------GAMYB------>ZmHOX2a(2) <----- ->MYB55(2)                               ------>ZmHOX2a(2)    --------->MYB55(2)         <----------DOF2 ->MYB52(2)                              <------ZmHOX2a(2)    <---------AtMYB61           <---------DAG2 ->MYB111(2)         <-----------GT1    --------->ARR14(2)   <---------MYB52(1)    <---------ETT(2) ->MYB46(2)   ----------->GT1           <---------ARR14(2) <-----------RAV1(1)     --------->ETT(2)   gcgttgaaatcgcagggggtgattcacatcccatttgatttggatccgaacaaattcgactctggtggttgtaaaaggatcgaagtcgaccgcttttcgc  378000                                                                           ---------->DOF2                                                                         --------->LBD16                                                                        --------->HSFB2a(2)                                                                        <---------HSFB2a(2)                                                                       ==============================                                                                       ------>ZmHOX2a(2)                                                                      ===============================                                     <-------TEIL                     <------ZmHOX2a(2)                                --------->HSFB2a(2)                  --------->ARR14(2)                                <---------HSFB2a(2) xxxxxxxxxxxxxxxx>smallRNA(i)    <---------AHL20(2)     ----------->HVH21   <---------ATHB12 --------->GLK1(2)          <---------ARR14(2)  --------->MYB52(1)   --------->WOX13(1)<---------GLK1(2)         xxxxxxxxxxxxxxxxxxxxxxx>smallRNA(le3) ----At4g35610       <---------YAB1 --------->GLK1(2)      --------->HSFB2a(2)  --------->CCA1(2)   <   tcaccaagggaccctgctatgttatcaatgacttcgagattcagaaactgtaggggaatttctcgcacttggatccagaaaggtatgaaattgagcacaa  378100            <---------MYB52(1)           --------->LBD16                 --------->ANAC58         <---------LBD16                   --------->ANAC58       --------->ARR14(2)                  --------->ANAC46       <---------ARR14(2)                 ------>ZmHOX2a(2)      <---------GLK1(1)                   <---------LBD16xxxxxxxxxxxxxxxx>smallRNA(s)      <---------CCA1(2)                  <------ZmHOX2a(2)   <-------TEIL                         --------->ARR14(2)                                          -   ------>ZmHOX2a(2)                    <---------ARR14(2)------->TEIL                             --  <------ZmHOX2a(2)                  --------->SPL7     --------->WRKY12                    <-------- <---------ARR14(2)             ----------->RAV1(1)     --------->WRKY38(1) <-----------HVH21    ---- --------->ARR14(2)          ----------->RAV1(1)       <xxxxxxxxxxxxxxxxsmallRNA(s)  --------->GLK1(2) ======HOX2a_HOX2a          --------->AtMYB61      --------->ARR11(3)  --------->ZAT14      --------- ======HOX2a_HOX2a          <---------ALFIN1--------->LBD16            <---------ZAT14    <---------- ------ZmHOX2a(1)          --------->MYB46(3)  ---------->DOF2 <-----------HVH21    <---------GLK1(2)   gaggatccatatccggtgtccagcgttccaccaccagcatacgatccgcaaaagaccatggaccgcgtctcagaacagtgtcaagagattcttcagatgg  378200                                                                                              -------                                                                                             <-------                                                                                             --------                                                                                             <-------                                                                                            ---------                                                                                            <xxxxxxxx                                                                                            ---------                                                                                           ----------                                                                                      --------->MYB52(1)                                                   <---------MYB59                   ----------->HVH21                                                   --------->AtMYB61               <------ZmHOX2a(2)                                                  --------->MYB46(3)               --------->At4g35610                                                 -------->P                        <---------At4g35610                                                 ------>MYB46(1)                  <-----------ARR10                                                 ------>MYB83                     <---------ARR14(2)                                               --------->AtMYB61                  <---------AGP1 <---                                         --------->ANAC58            --------->TCP20------>ZmHOX2a(2)   --------->AHL20(2)                    --------->ANAC58            <---------ARR14(2)   xxxxxxxxxxx ---------->GT1                      <---------MYB52(2)        <-------TEIL       --------->GLK1(2) --------->GT1                       --------->ANAC58------>MYB46(1) --------->ARR14(2) <---------ANAC46 -At4g35610                 <---------GLK1(2) --------->MYB46(3)<---------ANAC46  --------->ARR11(3) ------>DOF2             <---------WOX13(1)   <---------MYB52(2)<---------ANAC58  --------->ARR14(2) >At4g35610           <---------YAB1 --------->ANAC58------>MYB83<---------LBD16  <---------ARR11(3) -RAV1(2)   <---------HSFB2a(1)     <---------LBD16------->GAMYB<---------ANAC58 <------ZmHOX2a(1)<xx   aaagataaattggaatcgtcgattttgaatgattctgccacggacgaaaccaaccaaaccccaagttcgtggaaccgtagtgaggatctgacggagattc  378300       <------NtERF2                                   <----------DOF2       xxxxxxxxxxxxxxxxxxxxxx>smallRNA(l2)         ------>NtERF2     --------->ANAC46                              --------->ABI4(1)    <---------LBD16                                <---------ZAT18   <---------ANAC58                               <---------ALFIN1   <---------ANAC58               ------------>MYB.PH3(1) -->GLK1(2)                      --------->DAG2   --------->DREB2C(2)                       xxxxxxxxx --GLK1(2)                      ---------->DOF2   --------->DEAR3(1)                       <---------ANAC58 ->ARR14(2)               <------ZmHOX2a(1)       ------->GAMYB                            <---------ANAC46 --ARR14(2)              --------->ZAT2          --------->DEAR3(2)                        <---------ANAC58 >HSFB2a(1)              <---------ZAT2          --------->ANAC46                      <---------HSFB2a(1) xxxxxxxxxxxxxxxsmallRNA(le3)<------NtERF2       --------->ORA47(2)                    --------->HSFB2a(1) >GLK1(1)              <-----------RAV1(2)       --------->MYB46(3)                    --------->HSFC1(2) ->ARR10 xxxxxxxxxxxxxxxxxxxxxx>smallRNA(se3)   <---------At5g28300                ------->GAMYB ------YAB1            <---------LBD16         <---------ALFIN1                  xxxxxxxxxxxxxxxxxxxx xxxxx>smallRNA(s)  <---------REM1(2)         --------->MYB46(3)                --------->MYB52(1) xxxxxxxxxxxxxxxxxxxxxsmallRNA(si3)       <---------YAB1           ----------->RAV1(2) <---------HSFC1(2)   tgatttcgcggcatgaggggtctacccaggaggcaaaagcggttatcatccaccgccctttgaacaatagcctgagggagagcaacgggagtttcgtcga  378400                                                                                 <---------WOX13(1)                                                                                <------------CBF                                                                               --------->ATHB12                                                                              <---------AHL20(2)                       --------->ANAC58       *TSS  <------NtERF2            <---------WOX13(1)                    <---------ZAT18        --------->ATHB12                 <------------CBF        <---------TOE2(3)                  <---------ICU4                 --------->ICU4     <---------WOX13(1)--------->ANAC58   --------->ICU4               ----------->GT1 xxxxxxxxxxxxxx>smallRNA(i2) ------->TEIL <---------YAB1           ---------->DOF2               ---- xxx>smallRNA(se3)  --------->ZAT18  --------->ANAC46    <------ZmHOX2a(1)<---------YAB1----------->GT1   taccgagattgatgttctgaagggcacgacgaacattatcagccatgattagtcggagaggatagaatcgaaagagataattgattggaggggttaaatg  378500                                              <---------ARR14(2)                                          <-------TEIL                                         --------->ARR14(1)                                        <---------GLK1(2)                      <---------GLK1(1)                                        --------->ARR11(1)                    --------->ARR14(2)                                 --------->AHL20(2)                           <---------ARR14(2)                               --------------->AGL15                 --------->GLK1(2)                              <-----------------AGL3           ----------->RAV1(1)               --------->ARR14(2)<---------AHL20(2)           --------->MYB46(3)               <---------ARR14(2)----------->TBP         ----------->GT1 --------->ALFIN1      ------              --------->GLK1(1)<---------------AGL15<---------ANAC46<---------GLK1(2)       ------>ZmHOX2a(1) ----->ALFIN1 <---------GLK1(1)<----------DOF2--------->ARR14(2)  ------->GAMYB--------->GLK1(1) <---   tgagggaatggagaagaaatctgcaagtctcttctttaaatagattcgaatccatcgtggagtaacaacagaatcgtggggaactcccactatcctatta  378600                                         --------->LBD16                                         ------>NtERF2                                       <---------LBD16                                   <---------ALFIN1                                                xx                                 --------->DEAR3(1)               <---------HSFB2a(2)             <--                                --------->PCF2                    --------->HSFB2a(2)             <xx                              --------->DEAR3(1)             <---------HSFB2a(1)                  ---                              ------->GAMYB----------->GT1   <---------HSFC1(2)               <xxxxxx              --------->TOE1(2) --------->ANAC46             --------->HSFC1(2)           --------->TOE1(3)       ----------->RAV1(2)   --------->MYB46(3)              --------->HSFB2a(1)          ------->GAMYB     ------->GAMYB           <------------AtMYB77           <---------ARR14(2)           <-----------     --------->DEAR3(1)      --------->DEAR3(2)             <-----------ARR10           <xxxxxxxxxxxx    --------->MYB46(3)      <---------ATERF1(1)             --------->GLK1(2)           <---------At5g28300   -------->P<---------ICU4<---------ARR14(2)               <---------ARR11(3)         <-----------GT1 --------->MYB46(3)        --------->ARR14(2)               --------->ARR14(2)         --------->MYB52(1) <xxxxxxxxxxxxxxxxxxxxxxsmallRNA(fl3)<---------ALFIN1   --------->YAB1     ----------->TGA1<xxxxxxxxx --->YAB1    --------->ATHB12--------->ATERF1(1)      <-----------HVH21  --------->At4g35610 <xxxxxxx ------YAB1 <---------YAB1<------ZmHOX2a(1)<---------ANAC46<---------GLK1(2)         <xxxxxxxxxxxxxxx   tgaacaaccgcctgatcatgggagaagaggaaccgccccactccggcgtaaaaaactgtcagaatcttcgagagaagatgacgaagaagtaaccgtagcg  378700         <xxxxxxxxxxxxxxxxxxxxxxxsmallRNA(se3) xxxxxxxxxxxxxxxxxxxx>smallRNA(le3) -------ARR14(2) xxxxxxxxxxxxxxxxxxxsmallRNA(si3) ------>ARR14(2) xxxxxxxxxxsmallRNA(i) -AtMYB77--------->MYB46(3)                                                          ---------->DOF2 xxxxsmallRNA(s)  --------->ICU4                            <---------DAG2    --------->AHL20(2) xxxxxxxxxxxxxxsmallRNA(le3)                         <xxxxxxxxxxxxxxxxxxxxxxsmallRNA(le3) xxxxxxxxxsmallRNA(s)                                <-----------GT1    ------>ZmHOX2a(1)      <----- xsmallRNA(i)------->GAMYB                <----------DOF2   <----------DOF2   <---------AHL20(2)  <--   aaatcgccttaacaatcgccatttttgtttgtttttctgagagtctttttttttttatctagctttttgttatcctctatttttttataaagaatttttt  378800              --------->AHL20(2)                                                                   --              <---------AHL20(2)            <---------ARR11(3)                                     <-         <xxxxxxxxxxxxxxxxxxxxxxsmallRNA(fl3)                                                      --        ----------->GT1                  <---------AHL20(2)                                        --    <---------YAB1                       --------->AHL20(2)                                        --  --------->YAB1                      --------->YAB1                                            <----  --------->AHL20(2)                --------->AHL20(2)                                          ----- --------->ICU4   <-----------GT1  --------->YAB1                                            -------- <---------YAB1<---------ICU4      --------->AHL20(2)                              <---------AHL20(2) ------GT1--------->AHL20(2)    --------->YAB1      <------ZmHOX2a(1)             <---------AHL20(2) -------YAB1 --------->ICU4  ----------->GT1--------->ARR11(3)       <----------DOF2   <---------AHL20(2)   ctaattataaatgtaaatatttactatcacctagtaataaaaataaaatctctaggaaaacaatagcactcctttgaaacattttttattttttttaaaa  378900  Previous    Next  AGI:  At2g01840.1    Description:  transposable element gene. non-LTR retrotransposon family (LINE), has a 9.6e-34 P-value blast match to GB:NP_038607 L1 repeat, Tf subfamily, member 9 (LINE-element) (Mus musculus) Range:  from: 373124    to: 378446    Orientation: Reverse Links:  TAIR  MIPS      Please cite the corresponding publications when using AthaMap.
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