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Chromosome 1
Chromosome 2
Chromosome 3
Chromosome 4
Chromosome 5
Position
Exon region
Intron region
UTR region
AGI
% Restriction to highly conserved TF binding sites (0-100)
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1 10 20 30 40 50 60 70 80 90 100
------
GAMYB
-------
ANAC58
-------
ANAC58
<------
ZmHOX2a(1)
-------
ANAC46
---------->
DOF2
-
GAMYB
<-----------
RAV1(2)
<---------
MYB46(3)
--
MYB46(3)
xxxxxxxxxxxxxxxxxxxxxxx>
smallRNA(se3)
->
MYB111(1)
--------------->
AtSPL3
<-------
GAMYB
------>
ZmHOX2a(2)
<-----
->
MYB55(2)
------>
ZmHOX2a(2)
--------->
MYB55(2)
<----------
DOF2
->
MYB52(2)
<------
ZmHOX2a(2)
<---------
AtMYB61
<---------
DAG2
->
MYB111(2)
<-----------
GT1
--------->
ARR14(2)
<---------
MYB52(1)
<---------
ETT(2)
->
MYB46(2)
----------->
GT1
<---------
ARR14(2)
<-----------
RAV1(1)
--------->
ETT(2)
gcgttgaaatcgcagggggtgattcacatcccatttgatttggatccgaacaaattcgactctggtggttgtaaaaggatcgaagtcgaccgcttttcgc
378000
---------->
DOF2
--------->
LBD16
--------->
HSFB2a(2)
<---------
HSFB2a(2)
==============================
------>
ZmHOX2a(2)
===============================
<-------
TEIL
<------
ZmHOX2a(2)
--------->
HSFB2a(2)
--------->
ARR14(2)
<---------
HSFB2a(2)
xxxxxxxxxxxxxxxx>
smallRNA(i)
<---------
AHL20(2)
----------->
HVH21
<---------
ATHB12
--------->
GLK1(2)
<---------
ARR14(2)
--------->
MYB52(1)
--------->
WOX13(1)
<---------
GLK1(2)
xxxxxxxxxxxxxxxxxxxxxxx>
smallRNA(le3)
----
At4g35610
<---------
YAB1
--------->
GLK1(2)
--------->
HSFB2a(2)
--------->
CCA1(2)
<
tcaccaagggaccctgctatgttatcaatgacttcgagattcagaaactgtaggggaatttctcgcacttggatccagaaaggtatgaaattgagcacaa
378100
<---------
MYB52(1)
--------->
LBD16
--------->
ANAC58
<---------
LBD16
--------->
ANAC58
--------->
ARR14(2)
--------->
ANAC46
<---------
ARR14(2)
------>
ZmHOX2a(2)
<---------
GLK1(1)
<---------
LBD16
xxxxxxxxxxxxxxxx>
smallRNA(s)
<---------
CCA1(2)
<------
ZmHOX2a(2)
<-------
TEIL
--------->
ARR14(2)
-
------>
ZmHOX2a(2)
<---------
ARR14(2)
------->
TEIL
--
<------
ZmHOX2a(2)
--------->
SPL7
--------->
WRKY12
<--------
<---------
ARR14(2)
----------->
RAV1(1)
--------->
WRKY38(1)
<-----------
HVH21
----
--------->
ARR14(2)
----------->
RAV1(1)
<xxxxxxxxxxxxxxxx
smallRNA(s)
--------->
GLK1(2)
======
HOX2a_HOX2a
--------->
AtMYB61
--------->
ARR11(3)
--------->
ZAT14
---------
======
HOX2a_HOX2a
<---------
ALFIN1
--------->
LBD16
<---------
ZAT14
<----------
------
ZmHOX2a(1)
--------->
MYB46(3)
---------->
DOF2
<-----------
HVH21
<---------
GLK1(2)
gaggatccatatccggtgtccagcgttccaccaccagcatacgatccgcaaaagaccatggaccgcgtctcagaacagtgtcaagagattcttcagatgg
378200
-------
<-------
--------
<-------
---------
<xxxxxxxx
---------
----------
--------->
MYB52(1)
<---------
MYB59
----------->
HVH21
--------->
AtMYB61
<------
ZmHOX2a(2)
--------->
MYB46(3)
--------->
At4g35610
-------->
P
<---------
At4g35610
------>
MYB46(1)
<-----------
ARR10
------>
MYB83
<---------
ARR14(2)
--------->
AtMYB61
<---------
AGP1
<---
--------->
ANAC58
--------->
TCP20
------>
ZmHOX2a(2)
--------->
AHL20(2)
--------->
ANAC58
<---------
ARR14(2)
xxxxxxxxxxx
---------->
GT1
<---------
MYB52(2)
<-------
TEIL
--------->
GLK1(2)
--------->
GT1
--------->
ANAC58
------>
MYB46(1)
--------->
ARR14(2)
<---------
ANAC46
-
At4g35610
<---------
GLK1(2)
--------->
MYB46(3)
<---------
ANAC46
--------->
ARR11(3)
------>
DOF2
<---------
WOX13(1)
<---------
MYB52(2)
<---------
ANAC58
--------->
ARR14(2)
>
At4g35610
<---------
YAB1
--------->
ANAC58
------>
MYB83
<---------
LBD16
<---------
ARR11(3)
-
RAV1(2)
<---------
HSFB2a(1)
<---------
LBD16
------->
GAMYB
<---------
ANAC58
<------
ZmHOX2a(1)
<xx
aaagataaattggaatcgtcgattttgaatgattctgccacggacgaaaccaaccaaaccccaagttcgtggaaccgtagtgaggatctgacggagattc
378300
<------
NtERF2
<----------
DOF2
xxxxxxxxxxxxxxxxxxxxxx>
smallRNA(l2)
------>
NtERF2
--------->
ANAC46
--------->
ABI4(1)
<---------
LBD16
<---------
ZAT18
<---------
ANAC58
<---------
ALFIN1
<---------
ANAC58
------------>
MYB.PH3(1)
-->
GLK1(2)
--------->
DAG2
--------->
DREB2C(2)
xxxxxxxxx
--
GLK1(2)
---------->
DOF2
--------->
DEAR3(1)
<---------
ANAC58
->
ARR14(2)
<------
ZmHOX2a(1)
------->
GAMYB
<---------
ANAC46
--
ARR14(2)
--------->
ZAT2
--------->
DEAR3(2)
<---------
ANAC58
>
HSFB2a(1)
<---------
ZAT2
--------->
ANAC46
<---------
HSFB2a(1)
xxxxxxxxxxxxxxx
smallRNA(le3)
<------
NtERF2
--------->
ORA47(2)
--------->
HSFB2a(1)
>
GLK1(1)
<-----------
RAV1(2)
--------->
MYB46(3)
--------->
HSFC1(2)
->
ARR10
xxxxxxxxxxxxxxxxxxxxxx>
smallRNA(se3)
<---------
At5g28300
------->
GAMYB
------
YAB1
<---------
LBD16
<---------
ALFIN1
xxxxxxxxxxxxxxxxxxxx
xxxxx>
smallRNA(s)
<---------
REM1(2)
--------->
MYB46(3)
--------->
MYB52(1)
xxxxxxxxxxxxxxxxxxxxx
smallRNA(si3)
<---------
YAB1
----------->
RAV1(2)
<---------
HSFC1(2)
tgatttcgcggcatgaggggtctacccaggaggcaaaagcggttatcatccaccgccctttgaacaatagcctgagggagagcaacgggagtttcgtcga
378400
<---------
WOX13(1)
<------------
CBF
--------->
ATHB12
<---------
AHL20(2)
--------->
ANAC58
*
TSS
<------
NtERF2
<---------
WOX13(1)
<---------
ZAT18
--------->
ATHB12
<------------
CBF
<---------
TOE2(3)
<---------
ICU4
--------->
ICU4
<---------
WOX13(1)
--------->
ANAC58
--------->
ICU4
----------->
GT1
xxxxxxxxxxxxxx>
smallRNA(i2)
------->
TEIL
<---------
YAB1
---------->
DOF2
----
xxx>
smallRNA(se3)
--------->
ZAT18
--------->
ANAC46
<------
ZmHOX2a(1)
<---------
YAB1
----------->
GT1
taccgagattgatgttctgaagggcacgacgaacattatcagccat
gattagtcggagaggatagaatcgaaagagataattgattggaggggttaaatg
378500
<---------
ARR14(2)
<-------
TEIL
--------->
ARR14(1)
<---------
GLK1(2)
<---------
GLK1(1)
--------->
ARR11(1)
--------->
ARR14(2)
--------->
AHL20(2)
<---------
ARR14(2)
--------------->
AGL15
--------->
GLK1(2)
<-----------------
AGL3
----------->
RAV1(1)
--------->
ARR14(2)
<---------
AHL20(2)
--------->
MYB46(3)
<---------
ARR14(2)
----------->
TBP
----------->
GT1
--------->
ALFIN1
------
--------->
GLK1(1)
<---------------
AGL15
<---------
ANAC46
<---------
GLK1(2)
------>
ZmHOX2a(1)
----->
ALFIN1
<---------
GLK1(1)
<----------
DOF2
--------->
ARR14(2)
------->
GAMYB
--------->
GLK1(1)
<---
tgagggaatggagaagaaatctgcaagtctcttctttaaatagattcgaatccatcgtggagtaacaacagaatcgtggggaactcccactatcctatta
378600
--------->
LBD16
------>
NtERF2
<---------
LBD16
<---------
ALFIN1
xx
--------->
DEAR3(1)
<---------
HSFB2a(2)
<--
--------->
PCF2
--------->
HSFB2a(2)
<xx
--------->
DEAR3(1)
<---------
HSFB2a(1)
---
------->
GAMYB
----------->
GT1
<---------
HSFC1(2)
<xxxxxx
--------->
TOE1(2)
--------->
ANAC46
--------->
HSFC1(2)
--------->
TOE1(3)
----------->
RAV1(2)
--------->
MYB46(3)
--------->
HSFB2a(1)
------->
GAMYB
------->
GAMYB
<------------
AtMYB77
<---------
ARR14(2)
<-----------
--------->
DEAR3(1)
--------->
DEAR3(2)
<-----------
ARR10
<xxxxxxxxxxxx
--------->
MYB46(3)
<---------
ATERF1(1)
--------->
GLK1(2)
<---------
At5g28300
-------->
P
<---------
ICU4
<---------
ARR14(2)
<---------
ARR11(3)
<-----------
GT1
--------->
MYB46(3)
--------->
ARR14(2)
--------->
ARR14(2)
--------->
MYB52(1)
<xxxxxxxxxxxxxxxxxxxxxx
smallRNA(fl3)
<---------
ALFIN1
--------->
YAB1
----------->
TGA1
<xxxxxxxxx
--->
YAB1
--------->
ATHB12
--------->
ATERF1(1)
<-----------
HVH21
--------->
At4g35610
<xxxxxxx
------
YAB1
<---------
YAB1
<------
ZmHOX2a(1)
<---------
ANAC46
<---------
GLK1(2)
<xxxxxxxxxxxxxxx
tgaacaaccgcctgatcatgggagaagaggaaccgccccactccggcgtaaaaaactgtcagaatcttcgagagaagatgacgaagaagtaaccgtagcg
378700
<xxxxxxxxxxxxxxxxxxxxxxx
smallRNA(se3)
xxxxxxxxxxxxxxxxxxxx>
smallRNA(le3)
-------
ARR14(2)
xxxxxxxxxxxxxxxxxxx
smallRNA(si3)
------>
ARR14(2)
xxxxxxxxxx
smallRNA(i)
-
AtMYB77
--------->
MYB46(3)
---------->
DOF2
xxxx
smallRNA(s)
--------->
ICU4
<---------
DAG2
--------->
AHL20(2)
xxxxxxxxxxxxxx
smallRNA(le3)
<xxxxxxxxxxxxxxxxxxxxxx
smallRNA(le3)
xxxxxxxxx
smallRNA(s)
<-----------
GT1
------>
ZmHOX2a(1)
<-----
x
smallRNA(i)
------->
GAMYB
<----------
DOF2
<----------
DOF2
<---------
AHL20(2)
<--
aaatcgccttaacaatcgccatttttgtttgtttttctgagagtctttttttttttatctagctttttgttatcctctatttttttataaagaatttttt
378800
--------->
AHL20(2)
--
<---------
AHL20(2)
<---------
ARR11(3)
<-
<xxxxxxxxxxxxxxxxxxxxxx
smallRNA(fl3)
--
----------->
GT1
<---------
AHL20(2)
--
<---------
YAB1
--------->
AHL20(2)
--
--------->
YAB1
--------->
YAB1
<----
--------->
AHL20(2)
--------->
AHL20(2)
-----
--------->
ICU4
<-----------
GT1
--------->
YAB1
--------
<---------
YAB1
<---------
ICU4
--------->
AHL20(2)
<---------
AHL20(2)
------
GT1
--------->
AHL20(2)
--------->
YAB1
<------
ZmHOX2a(1)
<---------
AHL20(2)
-------
YAB1
--------->
ICU4
----------->
GT1
--------->
ARR11(3)
<----------
DOF2
<---------
AHL20(2)
ctaattataaatgtaaatatttactatcacctagtaataaaaataaaatctctaggaaaacaatagcactcctttgaaacattttttattttttttaaaa
378900
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AGI:
At2g01840.1
Description:
transposable element gene. non-LTR retrotransposon family (LINE), has a 9.6e-34 P-value blast match to GB:NP_038607 L1 repeat, Tf subfamily, member 9 (LINE-element) (Mus musculus)
Range:
from: 373124
to: 378446
Orientation: Reverse
Links:
TAIR
MIPS
Please cite the corresponding
publications
when using AthaMap.