Home Tools   - Search   - Colocalization   - Gene Analysis   - Gene Identification   - Small RNA Targets   - MicroRNA Targets Description Documentation Citations Downloads Publications History Contact Links Disclaimer	Search   Chromosome 1 Chromosome 2 Chromosome 3 Chromosome 4 Chromosome 5    Position Exon region Intron region UTR region AGI % Restriction to highly conserved TF binding sites (0-100)   Go to graphical and table display  1        10        20        30        40        50        60        70        80        90        100                                                                                     <---------YAB1                                                                                 --------->YAB1                                                       ==============================================                                              --------->YAB1                    <---------YAB1   --------->YAB1 ----------->GT1         --------->GLK1(1)                   --------->ATHB51 --MYB83         --------------->AtSPL3  <---------ARR11(3)                   <--------HAHB4 ------>GT1      --------------->AtSPL8  <---------ARR14(2)              <---------YAB1 --MYB46(1)    ------>MYB46(1)           --------->ARR14(2)          <---------GLK1(2)  <-----------GT1 ----MYB46(3)  ------>MYB83              --------->ARR11(3)    ----------->GT1-------->ATHB1 ---ANAC58   <---------MYB59            <------ZmHOX2a(1)  --------->ARR14(2) <---------ICU4 ---ANAC58   <---------MYB111(1)    ---------->DOF2    ----------------->AGL3 --------->YAB1 ---ANAC46 -------->P          --------->ZAT6<-------TEIL  <---------ARR14(2)--------->ICU4       ---   gtaaatcagaaactaccaaatcgtacatatttctcactaaaaggatattcatagcatctcatatatggttagattatgaattattatgattttcaatatt  28411200                        --------->ARR14(2)                       --------->GLK1(1)                       <---------GLK1(1)                         ------>ZmHOX2a(1)             <---------------AGL15                               --------->LBD16     ------>ZmHOX2a(1)             --------->HSFB2a(2)                             <---------ARR14(2)  <---------ARR14(2)             --------------->AGL15--------->YAB1          <---------TOE2(3)   <---------TOE2(3) ============================MADS_MADS      <-----------GT1  --------->ARR14(2)  --------->ARR14(2) ------->DOF2<---------HSFB2a(2) <---------ATHB12         <---------TOE1(3)   <---------TOE1(3)   caaagcttactctttctaaaaatcgaaatccactaatcaaaatgtttttcattctatgttaaggttcctggttattagttaaggttcctggttcacccat  28411300              --------->DAG2      <-----------GT1             --------->DAG2   <---------AHL20(2)            ---------->DOF2  <---------AHL20(2)      --------------->AtSPL3        --------->ANAC58     --------->AHL20(2)      --------->ZAT6        --------->ANAC58 <---------AHL20(2)         <---------At5g28300      ---------->DOF2    <---------YAB1            <-----------GT1                        <---------ETT(2)   --------->AtLEC2    --------->YAB1         <---------AHL20(2)    --------->ICU4  <xxxxxxxxxxxxxxxx   agttcatgcaaagcaaaaggggaatttataattttataacaaaattgttttatttacagtactattagtcactatgagacatatggataatgtagacaaa  28411400                                                                                                    <                                                                          --------->AHL20(2)        -                                                                          <---------AHL20(2)       --                                                                      <---------CCA1(1)            --                                                                      <---------RVE1(1)            --                                                                     --------->ARR11(3)   <---------ICU4                                                                     <---------ARR11(3)   --------->ATHB51                                 <-----------GT1                    <------ZmHOX2a(1)    <---------YAB1             ----------->GT1   --------->YAB1                      ----------->GT1       --------->ICU4    <---------YAB1            <---------YAB1    ---------->DOF2 ---------->DOF2        --------->YAB1 xxxxxxxsmallRNA(si3)---------->DOF2--------->ZAT6        --------->AHL20(2)        --------->YAB1<--   tagattataagaaaaatgtataacaaagacttattataccactaatctcacaaagaaagattaaacaaaaggatattttaatccaagaatcataatttct  28411500          <---------PCF5 <------NtERF2 ---------RAP2.6(3)           --------->DAG2                                         <----------DOF2 -------->LBD16              ---------->DOF2                           <---------ANAC58 ------->RAP2.6(2) <---------ARR11(3)                                  <---------ANAC46 ------->LBD16   --------->ANAC58                                      <---------ANAC58        <----- ------->HSFB2a(2) --------->ARR11(3)        ----------->GT1         ------>ZmHOX2a(1)        <------ -------LBD16    --------->ANAC58   ---------->DOF2   <---------------AtSPL8    <----------DOF2------   gccggaatagatggaccacaagaactagacataaagccgaaagagactagtttaatcaagtacaacaagtccttcgtgttctcttttctttgattcaaat  28411600                                                                   xxxxxxxxxxxxxxxxx>smallRNA(si3)                                                                 <---------GLK1(2)                                                                 --------->ARR14(2)                                                                 <---------ARR11(3)                                                                 <---------ARR14(2)                                                                <------ZmHOX2a(1)                                                               xxxxxxxxxxxxxxxxxxxx>smallRNA(se3)                                                              xxxxxxxxxxxxxxxxxxxxx>smallRNA(se3)                                                              xxxxxxxxxxxxxxxxxxxxxxxxxx>smallRNA(se3)                                                              xxxxxxxxxxxxxxxxxxx>smallRNA(se3)                                                              xxxxxxxxxxxxxxx>smallRNA(si3)                                                              xxxxxxxxxxxxxxxxx>smallRNA(fl3)                                                              xxxxxxxxxxxxxxxxxxxxxxxxxx>smallRNA(le3)                                                              xxxxxxxxxxxxxxxx>smallRNA(fl3)                                                             xxxxxxxxxxxxxxxx>smallRNA(s)                                                             xxxxxxxxxxxxxxxxx>smallRNA(se3)                                                             xxxxxxxxxxxxxxxxxxxxxxxxxx>smallRNA(se3)                                                             xxxxxxxxxxxxxxx>smallRNA(le3)                                                             xxxxxxxxxxxxxxxxxxxxxxx>smallRNA(se3)                                                             xxxxxxxxxxxxxxxxxxx>smallRNA(se3)                                                             <-----------RAV1(2)                                                            xxxxxxxxxxxxxxxxxxx>smallRNA(se3)                                                            xxxxxxxxxxxxxxxx>smallRNA(s)                                                       --------->ZAT2                                                       <---------At4g35610                                                       <---------ZAT2                                                      xxxxxxxxxxxxxxxxxxxxxxx>smallRNA(fl3)                                                   xxxxxxxxxxxxxxxxxxxxxxxxx>smallRNA(se3)                                                  xxxxxxxxxxxxxxxxxxxxxxxx>smallRNA(se3)                                                  xxxxxxxxxxxxxxxxxxxxxxxx>smallRNA(fl3)                                                  xxxxxxxxxxxxxxxx>smallRNA(s)                                                xxxxxxxxxxxxxxxxxxxxxxx>smallRNA(se3)                                                xxxxxxxxxxxxxxxx>smallRNA(i)                                               xxxxxxxxxxxxxxxxxx>smallRNA(se3)                                              xxxxxxxxxxxxxxxx>smallRNA(s)                                              xxxxxxxxxxxxxxxxxxxxxxxxx>smallRNA(se3)                                              xxxxxxxxxxxxxxxxxxx>smallRNA(fl3)                                             xxxxxxxxxxxxxxxxxxx>smallRNA(le3)                                             xxxxxxxxxxxxxxxxxxxxxxxxxxx>smallRNA(le3)                                             xxxxxxxxxxxxxxxxxxxxxx>smallRNA(le3)                                             xxxxxxxxxxxxxxxxxxxx>smallRNA(le3)                                             xxxxxxxxxxxxxxxxxxxxxx>smallRNA(i2)                                             xxxxxxxxxxxxxxx>smallRNA(le3)                                             xxxxxxxxxxxxxxxxxxxxx>smallRNA(le3)                                             xxxxxxxxxxxxxxxxxxxx>smallRNA(si3)                                             xxxxxxxxxxxxxxxx>smallRNA(s)                                             xxxxxxxxxxxxxxxxxxxxxxxxxx>smallRNA(fl3)                                             xxxxxxxxxxxxxxxxxxxxxxx>smallRNA(fl3)                                             xxxxxxxxxxxxxxxxxxxxxxxxx>smallRNA(fl3)                                             xxxxxxxxxxxxxxxxxx>smallRNA(fl3)                                             xxxxxxxxxxxxxxxxxxxxxxxxxxx>smallRNA(fl3)                                             xxxxxxxxxxxxxxxx>smallRNA(fl3)                                             xxxxxxxxxxxxxxx>smallRNA(fl3)                                             xxxxxxxxxxxxxxxxxxxx>smallRNA(fl3)                                             xxxxxxxxxxxxxxxxxxxxx>smallRNA(fl3)                                             xxxxxxxxxxxxxxxxx>smallRNA(fl3)                                             xxxxxxxxxxxxxxxxxxx>smallRNA(fl3)                                             xxxxxxxxxxxxxxxx>smallRNA(i)<-----------ARR10                                             xxxxxxxxxxxxxxx>smallRNA(si3)                                             xxxxxxxxxxxxxxxxxxxxxxxx>smallRNA(si3)                                             xxxxxxxxxxxxxxxxxxx>smallRNA(si3)                                             xxxxxxxxxxxxxxxxxxxxxx>smallRNA(si3)                                             xxxxxxxxxxxxxxxxxx>smallRNA(se3)                                             xxxxxxxxxxxxxxxxxxxxx>smallRNA(si3)                                             *TSS xxxxxxxxxxxxxxxxxxxxxxx>smallRNA(fl3)                                             xxxxxxxxxxxxxxxxxxxxxxx>smallRNA(si3)                                             xxxxxxxxxxxxxxxxxxxxxxxxxxx>smallRNA(si3)                                             xxxxxxxxxxxxxxxxxxxxx>smallRNA(l2)                                             xxxxxxxxxxxxxxxxx>smallRNA(si3)                                             xxxxxxxxxxxxxxxxxxxx>smallRNA(l2)                                             xxxxxxxxxxxxxxxxxxxxxx>smallRNA(se3)                                             xxxxxxxxxxxxxxxxx>smallRNA(se3)                                             xxxxxxxxxxxxxxxxxxxxx>smallRNA(se3)                                             xxxxxxxxxxxxxxxxxxxx>smallRNA(se3)                                             xxxxxxxxxxxxxxxxxxx>smallRNA(se3)                                             xxxxxxxxxxxxxxxxxxxxxxxx>smallRNA(se3)                                             xxxxxxxxxxxxxxxx>smallRNA(se3)                 xxxxxxxxx                                             xxxxxxxxxxxxxxxxxxxxxxxxxx>smallRNA(se3)      --------->LBD16                                             xxxxxxxxxxxxxxxxxxxxxxxxx>smallRNA(se3) xxxxxxxxxxxxxxxx                     <---------At4g35610     xxxxxxxxxxxxxxxxxxxxxxxx>smallRNA(fl3) xxxxxxxxxxxxxxxx>smallRNA(s)       <-----------HVH21                     xxxxxxxxxxxxxxxxxxxxxxx>smallRNA(se3) xxxxxxxxxxxxxxxx>smallRNA(s)    <---------ANAC55(1)                     xxxxxxxxxxxxxxxxxxxxx>smallRNA(si3)   --------->LBD16    --------->ANAC55(2)                 --------->ARR14(2) xxxxxxxxxxxxxxxx>smallRNA(s)  <---------LBD16    <---------ANAC55(2)                --------->GLK1(1) xxxxxxxxxxxxxxxxxxxxxx>smallRNA(si3) ----ARR14(2)        --------->At4g35610<---------ARR14(2)xxxxxxxxxxxxxxxx>smallRNA(s)xxxxxxxxxxxxxxx ---CCA1(2)  <---------AHL20(2)        <---------GLK1(1)xxxxxxxxxxxxxxxx>smallRNA(s)xxxxxxxxxxxxxxxx>smallRNA(si3) --->ARR11(3)--------->AHL20(2)       xxxxxxxxxxxxxxxxxxxxxx>smallRNA(si3)  ----------->HVH21 xxxxxxx   cttgttaagtgtcatataatttgagctaagaaatcgaacacaaatccgttgtagtctagctggtcaggatactcggctctcacccgagagacccgggttc  28411700               --------->GLK1(2)             --------->HSFB2a(1)             --------->HSFC1(2)          ------->GAMYB       --------->MYB52(1)     <------NtERF2    --------->ANAC46    ------>NtERF2    --------->LBD16   <---------LBD16   <---------ETT(1)   --------->LBD16        <---------AHL20(2)  <---------LBD16 <----------DOF2 <---------YAB1 xxxxxxx>smallRNA(fl3)    <---------AHL20(1) >smallRNA(s)<---------HSFC1(2)<---------AHL20(2)            <---------CCA1(2) xxxxxxx>smallRNA(fl3)    --------->AHL20(2)         ---------->DOF2 xxxxxxxxx>smallRNA(s)<---------AHL20(2)         <---------ETT(1)                              ------   gagtcccggcaacggagtttctttttattttattttttgataaatgggcttccgacaaagcccatattttggtttgtcttaagcccgattactgtttcat  28411800                                                                        <------NtERF2                                                                       ------>NtERF2                                                                      <---------DEAR3(1)                                                                     --------->ATERF1(1)                                                                     <------NtERF2                                                                    <---------SPL7                                                                    <---------ATERF1(1)                                                                   --------->DEAR3(1)                                                                   --------->RAP2.3(3)                                                                   <---------ATERF1(2)                                                                   --------->ATERF1(2)                                                                  --------->RAP2.3(1)                                                                  --------->ERF1                                                                  --------->RRTF1(1)                                                                ------->GAMYB                                                                --------->DEAR3(1)                                                                --------->ANAC46    <------MYB83                                                      ----------->HVH21<---------DEAR3(2)                                                    <---------ANAC58<-----------HVH21      <---------                                                    <---------ANAC58------>NtERF2   <------MYB46(1)                          <----------ID1      <---------ZAT18  <------------AtMYB77 <---------MYB46(3)           <---------ANAC58            --------->AHL20(2) --------->TOE2(3)  <---------ALFIN1    <---           <---------ANAC58            <---------ATHB12   --------->TOE1(3) --------->MYB46(3)   <---         <-----------GT1  ----------->GT1     --------->ZAT14  --------->DEAR3(2)  <---------AtMYB61        *TSS           <---------MYB52(1)     --------->ZAT18  --------->MYB46(3) <---------MYB52(1) --->TOE2(3)<----------DOF2<------ZmHOX2a(1)  <---------ZAT14 <---------At5g28300<-------GAMYB<------   taatccgatttttgctttctcatccattaggaaaaaacccaataaatgtgcacttcgtgaccttaaccgccgtcggcaaacaccgttggttttttacttt  28411900                          --------->ARR11(3)                         <---------CCA1(2)                     --------->CCA1(2)                    --------->ARR11(3)                 <------NtERF2                                             <------MYB83                --------->LBD16                                 <-----------GT1       --------->ARR14(2)              <------NtERF2                                   <----------DOF2  <---------HSFB2a(2)              <---------LBD16                             <---------MYB52(1)   <------NtERF2              --------->ATERF1(1)                      --------->DEAR3(2)  <------MYB46(1)            <---------DEAR3(1)                        ------->TEIL       <--------P --------->HSFC1(2)            --------->ETT(2)                        <---------SPL7      <-------GAMYB <---------ARR14(2)     <----------DOF2<---------ARR11(3)              <---------ZAT14    --------->MYB55(2) ---------->ID1--------->DEAR3(1)                   --------->ZAT18    <---------MYB46(3) --GT1    <-----------HVH21                        --------->ALFIN1    --------->ATHB12             < ------ANAC58------>NtERF2<---------ARR11(3)     <---------ANAC46     <---------AtMYB61     <-------- ------ANAC58<---------RAP2.3(1)                 <---------ANAC58    <---------MYB52(1)   ------>ZmHOX2a(1) ----DOF2<-----------RAV1(1)                     <---------ANAC58<---------At5g28300<---------HSFC1(2)   cttgttcctttgtgtcgccggagatatatatcttcgacatcggtgaagaatgggtgtaccgtcgttttaccgatggttggccgagaagtatcctctttta  28412000                                                                               -------->P    <-----------ARR10                                                         ------->GAMYB   <-------GAMYB                                                        --------->TOE2(3)   <------NtERF2                                                        --------->TOE1(3)  <---------MYB46(3)                                                   --------->ZAT6         ------- <---------ANAC58                                      <---------ARR14(2)    <---------MYB111(2) <--- <---------ANAC58                                      --------->ARR14(2)    --------->MYB46(3) <---- <---------ANAC46                                 ------>ZmHOX2a(1)  ------>MYB83--------->TOE2(3) <---------RAP2.6(2)                          --------->GLK1(2)      ------>MYB46(1)     <---------YAB1 ---------LBD16         <-------GAMYB        <---------GLK1(2)     <---------MYB59    --------->ARR14(2) --DOF2        <------ZmHOX2a(1)           <---------YAB1          --------->AtMYB61  <---------ARR14(2)   gtggcggatgttatcgaggaagagcctgttgaaatcgaaggcatcaagattcctgtggatactagtaaacctaaccctaacaacctcgaatacgataatc  28412100  Previous    Next  AGI:  At1g75650.1    Description:  pre-tRNA. tRNA-Glu (anticodon: CTC) Range:  from: 28411645    to: 28411717    Orientation: Forward Links:  TAIR  MIPS    AGI:  At1g75660.1    Description:  XRN3 (5'-3' exoribonuclease 3); 5'-3' exoribonuclease. similar to XRN2 (EXORIBONUCLEASE 2), 5'-3' exonuclease/ nucleic acid binding [Arabidopsis thaliana] (TAIR:AT5G42540.1); similar to hypothetical protein OsJ_004151 [Oryza sativa (japonica cultivar-group)] (GB:EAZ14326.1); similar to putative 5-3 exoribonuclease [Oryza sativa (japonica cultivar-group)] (GB:BAB86550.1); similar to hypothetical protein OsI_004507 [Oryza sativa (indica cultivar-group)] (GB:EAY76660.1); contains InterPro domain Zinc finger, CCHC-type; (InterPro:IPR001878); contains InterPro domain Putative 5-3 exonuclease; (InterPro:IPR004859); contains InterPro domain Exonucle Range:  from: 28411808    to: 28418778    Orientation: Forward Links:  TAIR  MIPS      Please cite the corresponding publications when using AthaMap.
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