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Chromosome 1
Chromosome 2
Chromosome 3
Chromosome 4
Chromosome 5
Position
Exon region
Intron region
UTR region
AGI
% Restriction to highly conserved TF binding sites (0-100)
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1 10 20 30 40 50 60 70 80 90 100
<---------
YAB1
--------->
YAB1
==============================================
--------->
YAB1
<---------
YAB1
--------->
YAB1
----------->
GT1
--------->
GLK1(1)
--------->
ATHB51
--
MYB83
--------------->
AtSPL3
<---------
ARR11(3)
<--------
HAHB4
------>
GT1
--------------->
AtSPL8
<---------
ARR14(2)
<---------
YAB1
--
MYB46(1)
------>
MYB46(1)
--------->
ARR14(2)
<---------
GLK1(2)
<-----------
GT1
----
MYB46(3)
------>
MYB83
--------->
ARR11(3)
----------->
GT1
-------->
ATHB1
---
ANAC58
<---------
MYB59
<------
ZmHOX2a(1)
--------->
ARR14(2)
<---------
ICU4
---
ANAC58
<---------
MYB111(1)
---------->
DOF2
----------------->
AGL3
--------->
YAB1
---
ANAC46
-------->
P
--------->
ZAT6
<-------
TEIL
<---------
ARR14(2)
--------->
ICU4
---
gtaaatcagaaactaccaaatcgtacatatttctcactaaaaggatattcatagcatctcatatatggttagattatgaattattatgattttcaatatt
28411200
--------->
ARR14(2)
--------->
GLK1(1)
<---------
GLK1(1)
------>
ZmHOX2a(1)
<---------------
AGL15
--------->
LBD16
------>
ZmHOX2a(1)
--------->
HSFB2a(2)
<---------
ARR14(2)
<---------
ARR14(2)
--------------->
AGL15
--------->
YAB1
<---------
TOE2(3)
<---------
TOE2(3)
============================
MADS_MADS
<-----------
GT1
--------->
ARR14(2)
--------->
ARR14(2)
------->
DOF2
<---------
HSFB2a(2)
<---------
ATHB12
<---------
TOE1(3)
<---------
TOE1(3)
caaagcttactctttctaaaaatcgaaatccactaatcaaaatgtttttcattctatgttaaggttcctggttattagttaaggttcctggttcacccat
28411300
--------->
DAG2
<-----------
GT1
--------->
DAG2
<---------
AHL20(2)
---------->
DOF2
<---------
AHL20(2)
--------->
ZAT6
--------->
ANAC58
--------->
AHL20(2)
--------------->
AtSPL3
--------->
ANAC58
<---------
AHL20(2)
<---------
At5g28300
---------->
DOF2
<---------
YAB1
<-----------
GT1
<---------
ETT(2)
--------->
AtLEC2
--------->
YAB1
<---------
AHL20(2)
--------->
ICU4
<xxxxxxxxxxxxxxxx
agttcatgcaaagcaaaaggggaatttataattttataacaaaattgttttatttacagtactattagtcactatgagacatatggataatgtagacaaa
28411400
<
<---------
AHL20(2)
-
--------->
AHL20(2)
--
<---------
RVE1(1)
--
<---------
CCA1(1)
--
<---------
ARR11(3)
--------->
ATHB51
--------->
ARR11(3)
<---------
ICU4
<-----------
GT1
<------
ZmHOX2a(1)
--------->
ICU4
----------->
GT1
--------->
YAB1
----------->
GT1
<---------
YAB1
<---------
YAB1
<---------
YAB1
---------->
DOF2
---------->
DOF2
--------->
YAB1
xxxxxxx
smallRNA(si3)
---------->
DOF2
--------->
ZAT6
--------->
AHL20(2)
--------->
YAB1
<--
tagattataagaaaaatgtataacaaagacttattataccactaatctcacaaagaaagattaaacaaaaggatattttaatccaagaatcataatttct
28411500
<---------
PCF5
<------
NtERF2
---------
RAP2.6(3)
--------->
DAG2
<----------
DOF2
-------->
LBD16
---------->
DOF2
<---------
ANAC58
------->
RAP2.6(2)
<---------
ARR11(3)
<---------
ANAC46
------->
HSFB2a(2)
--------->
ARR11(3)
<---------
ANAC58
<-----
------->
LBD16
--------->
ANAC58
----------->
GT1
------>
ZmHOX2a(1)
<------
-------
LBD16
--------->
ANAC58
---------->
DOF2
<---------------
AtSPL8
<----------
DOF2
------
gccggaatagatggaccacaagaactagacataaagccgaaagagactagtttaatcaagtacaacaagtccttcgtgttctcttttctttgattcaaat
28411600
xxxxxxxxxxxxxxxxx>
smallRNA(si3)
<---------
GLK1(2)
--------->
ARR14(2)
<---------
ARR11(3)
<---------
ARR14(2)
<------
ZmHOX2a(1)
xxxxxxxxxxxxxxxxxxxx>
smallRNA(se3)
xxxxxxxxxxxxxxxxxxxxx>
smallRNA(se3)
xxxxxxxxxxxxxxxxxxxxxxxxxx>
smallRNA(se3)
xxxxxxxxxxxxxxxxxxx>
smallRNA(se3)
xxxxxxxxxxxxxxx>
smallRNA(si3)
xxxxxxxxxxxxxxxxx>
smallRNA(fl3)
xxxxxxxxxxxxxxxxxxxxxxxxxx>
smallRNA(le3)
xxxxxxxxxxxxxxxx>
smallRNA(fl3)
xxxxxxxxxxxxxxxx>
smallRNA(s)
xxxxxxxxxxxxxxxxx>
smallRNA(se3)
xxxxxxxxxxxxxxxxxxxxxxxxxx>
smallRNA(se3)
xxxxxxxxxxxxxxx>
smallRNA(le3)
xxxxxxxxxxxxxxxxxxxxxxx>
smallRNA(se3)
xxxxxxxxxxxxxxxxxxx>
smallRNA(se3)
<-----------
RAV1(2)
xxxxxxxxxxxxxxxxxxx>
smallRNA(se3)
xxxxxxxxxxxxxxxx>
smallRNA(s)
--------->
ZAT2
<---------
At4g35610
<---------
ZAT2
xxxxxxxxxxxxxxxxxxxxxxx>
smallRNA(fl3)
xxxxxxxxxxxxxxxxxxxxxxxxx>
smallRNA(se3)
xxxxxxxxxxxxxxxxxxxxxxxx>
smallRNA(se3)
xxxxxxxxxxxxxxxxxxxxxxxx>
smallRNA(fl3)
xxxxxxxxxxxxxxxx>
smallRNA(s)
xxxxxxxxxxxxxxxxxxxxxxx>
smallRNA(se3)
xxxxxxxxxxxxxxxx>
smallRNA(i)
xxxxxxxxxxxxxxxxxx>
smallRNA(se3)
xxxxxxxxxxxxxxxx>
smallRNA(s)
xxxxxxxxxxxxxxxxxxxxxxxxx>
smallRNA(se3)
xxxxxxxxxxxxxxxxxxx>
smallRNA(fl3)
xxxxxxxxxxxxxxxxxxx>
smallRNA(le3)
xxxxxxxxxxxxxxxxxxxxxxxxxxx>
smallRNA(le3)
xxxxxxxxxxxxxxxxxxxxxx>
smallRNA(le3)
xxxxxxxxxxxxxxxxxxxx>
smallRNA(le3)
xxxxxxxxxxxxxxxxxxxxxx>
smallRNA(i2)
xxxxxxxxxxxxxxx>
smallRNA(le3)
xxxxxxxxxxxxxxxxxxxxx>
smallRNA(le3)
xxxxxxxxxxxxxxxxxxxx>
smallRNA(si3)
xxxxxxxxxxxxxxxx>
smallRNA(s)
xxxxxxxxxxxxxxxxxxxxxxxxxx>
smallRNA(fl3)
xxxxxxxxxxxxxxxxxxxxxxx>
smallRNA(fl3)
xxxxxxxxxxxxxxxxxxxxxxxxx>
smallRNA(fl3)
xxxxxxxxxxxxxxxxxx>
smallRNA(fl3)
xxxxxxxxxxxxxxxxxxxxxxxxxxx>
smallRNA(fl3)
xxxxxxxxxxxxxxxx>
smallRNA(fl3)
xxxxxxxxxxxxxxx>
smallRNA(fl3)
xxxxxxxxxxxxxxxxxxxx>
smallRNA(fl3)
xxxxxxxxxxxxxxxxxxxxx>
smallRNA(fl3)
xxxxxxxxxxxxxxxxx>
smallRNA(fl3)
xxxxxxxxxxxxxxxxxxx>
smallRNA(fl3)
xxxxxxxxxxxxxxxx>
smallRNA(i)
<-----------
ARR10
xxxxxxxxxxxxxxx>
smallRNA(si3)
xxxxxxxxxxxxxxxxxxxxxxxx>
smallRNA(si3)
xxxxxxxxxxxxxxxxxxx>
smallRNA(si3)
xxxxxxxxxxxxxxxxxxxxxx>
smallRNA(si3)
xxxxxxxxxxxxxxxxxx>
smallRNA(se3)
xxxxxxxxxxxxxxxxxxxxx>
smallRNA(si3)
*
TSS
xxxxxxxxxxxxxxxxxxxxxxx>
smallRNA(fl3)
xxxxxxxxxxxxxxxxxxxxxxx>
smallRNA(si3)
xxxxxxxxxxxxxxxxxxxxxxxxxxx>
smallRNA(si3)
xxxxxxxxxxxxxxxxxxxxx>
smallRNA(l2)
xxxxxxxxxxxxxxxxx>
smallRNA(si3)
xxxxxxxxxxxxxxxxxxxx>
smallRNA(l2)
xxxxxxxxxxxxxxxxxxxxxx>
smallRNA(se3)
xxxxxxxxxxxxxxxxx>
smallRNA(se3)
xxxxxxxxxxxxxxxxxxxxx>
smallRNA(se3)
xxxxxxxxxxxxxxxxxxxx>
smallRNA(se3)
xxxxxxxxxxxxxxxxxxx>
smallRNA(se3)
xxxxxxxxxxxxxxxxxxxxxxxx>
smallRNA(se3)
xxxxxxxxxxxxxxxx>
smallRNA(se3)
xxxxxxxxx
xxxxxxxxxxxxxxxxxxxxxxxxxx>
smallRNA(se3)
--------->
LBD16
xxxxxxxxxxxxxxxxxxxxxxxxx>
smallRNA(se3)
xxxxxxxxxxxxxxxx
--------->
At4g35610
xxxxxxxxxxxxxxxxxxxxxxxx>
smallRNA(fl3)
xxxxxxxxxxxxxxxx>
smallRNA(s)
<-----------
HVH21
xxxxxxxxxxxxxxxxxxxxxxx>
smallRNA(se3)
xxxxxxxxxxxxxxxx>
smallRNA(s)
<---------
ANAC55(2)
xxxxxxxxxxxxxxxxxxxxx>
smallRNA(si3)
--------->
LBD16
--------->
ANAC55(2)
--------->
ARR14(2)
xxxxxxxxxxxxxxxx>
smallRNA(s)
<---------
LBD16
<---------
ANAC55(1)
<---------
GLK1(1)
xxxxxxxxxxxxxxxxxxxxxx>
smallRNA(si3)
----
ARR14(2)
<---------
At4g35610
<---------
ARR14(2)
xxxxxxxxxxxxxxxx>
smallRNA(s)
xxxxxxxxxxxxxxx
---
CCA1(2)
--------->
AHL20(2)
--------->
GLK1(1)
xxxxxxxxxxxxxxxx>
smallRNA(s)
xxxxxxxxxxxxxxxx>
smallRNA(si3)
--->
ARR11(3)
<---------
AHL20(2)
xxxxxxxxxxxxxxxxxxxxxx>
smallRNA(si3)
----------->
HVH21
xxxxxxx
cttgttaagtgtcatataatttgagctaagaaatcgaacacaaa
tccgttgtagtctagctggtcaggatactcggctctcacccgagagacccgggttc
28411700
--------->
GLK1(2)
--------->
HSFB2a(1)
<---------
HSFC1(2)
------->
GAMYB
--------->
MYB52(1)
<------
NtERF2
--------->
ANAC46
------>
NtERF2
--------->
LBD16
--------->
LBD16
<---------
ETT(1)
<---------
LBD16
<---------
AHL20(1)
<---------
LBD16
<----------
DOF2
<---------
YAB1
xxxxxxx>
smallRNA(fl3)
--------->
AHL20(2)
>
smallRNA(s)
--------->
HSFC1(2)
<---------
AHL20(2)
<---------
CCA1(2)
xxxxxxx>
smallRNA(fl3)
<---------
AHL20(2)
---------->
DOF2
xxxxxxxxx>
smallRNA(s)
<---------
AHL20(2)
<---------
ETT(1)
------
gagtcccggcaacggag
tttctttttattttattttttgataaatgggcttccgacaaagcccatattttggtttgtcttaagcccgattactgtttcat
28411800
<------
NtERF2
------>
NtERF2
<---------
DEAR3(1)
--------->
ATERF1(1)
<------
NtERF2
<---------
SPL7
<---------
ATERF1(1)
--------->
RAP2.3(3)
--------->
DEAR3(1)
<---------
ATERF1(2)
--------->
ATERF1(2)
--------->
RAP2.3(1)
--------->
ERF1
--------->
RRTF1(1)
------->
GAMYB
--------->
DEAR3(1)
--------->
ANAC46
<------
MYB83
----------->
HVH21
<---------
DEAR3(2)
<---------
ANAC58
<-----------
HVH21
<---------
<---------
ANAC58
------>
NtERF2
<------
MYB46(1)
<----------
ID1
--------->
ZAT14
<------------
AtMYB77
<---------
MYB46(3)
<---------
ANAC58
<---------
ATHB12
--------->
TOE2(3)
<---------
ALFIN1
<---
<---------
ANAC58
--------->
AHL20(2)
--------->
TOE1(3)
--------->
MYB46(3)
<---
<-----------
GT1
----------->
GT1
<---------
ZAT18
--------->
DEAR3(2)
<---------
AtMYB61
*
TSS
<---------
MYB52(1)
--------->
ZAT18
--------->
MYB46(3)
<---------
MYB52(1)
--->
TOE2(3)
<----------
DOF2
<------
ZmHOX2a(1)
<---------
ZAT14
<---------
At5g28300
<-------
GAMYB
<------
taatccg
atttttgctttctcatccattaggaaaaaacccaataaatgtgcacttcgtgaccttaaccgccgtcggcaaacaccgttggttttttacttt
28411900
--------->
ARR11(3)
<---------
CCA1(2)
--------->
CCA1(2)
--------->
ARR11(3)
<------
NtERF2
<------
MYB83
--------->
LBD16
<-----------
GT1
--------->
ARR14(2)
<------
NtERF2
<----------
DOF2
<---------
HSFB2a(2)
<---------
LBD16
<---------
MYB52(1)
<------
NtERF2
--------->
ATERF1(1)
--------->
DEAR3(2)
<------
MYB46(1)
<---------
DEAR3(1)
------->
TEIL
<--------
P
--------->
HSFC1(2)
--------->
ETT(2)
<---------
SPL7
<-------
GAMYB
<---------
ARR14(2)
<----------
DOF2
<---------
ARR11(3)
<---------
ZAT14
--------->
MYB55(2)
---------->
ID1
--------->
DEAR3(1)
--------->
ZAT18
<---------
MYB46(3)
--
GT1
<-----------
HVH21
--------->
ALFIN1
--------->
ATHB12
<
------
ANAC58
------>
NtERF2
<---------
ARR11(3)
<---------
ANAC46
<---------
AtMYB61
<--------
------
ANAC58
<---------
RAP2.3(1)
<---------
ANAC58
<---------
MYB52(1)
------>
ZmHOX2a(1)
----
DOF2
<-----------
RAV1(1)
<---------
ANAC58
<---------
At5g28300
<---------
HSFC1(2)
cttgttcctttgtgtcgccggagatatatatcttcgacatcggtgaaga
atgggtgtaccgtcgttttaccgatggttggccgagaagtatcctctttta
28412000
-------->
P
<-----------
ARR10
------->
GAMYB
<-------
GAMYB
--------->
TOE2(3)
<------
NtERF2
--------->
TOE1(3)
<---------
MYB46(3)
--------->
ZAT6
-------
<---------
ANAC58
<---------
ARR14(2)
<---------
MYB111(2)
<---
<---------
ANAC58
--------->
ARR14(2)
--------->
MYB46(3)
<----
<---------
ANAC46
------>
ZmHOX2a(1)
------>
MYB83
--------->
TOE2(3)
<---------
RAP2.6(2)
--------->
GLK1(2)
------>
MYB46(1)
<---------
YAB1
---------
LBD16
<-------
GAMYB
<---------
GLK1(2)
<---------
MYB59
--------->
ARR14(2)
--
DOF2
<------
ZmHOX2a(1)
<---------
YAB1
--------->
AtMYB61
<---------
ARR14(2)
gtggcggatgttatcgaggaagagcctgttgaaatcgaaggcatcaagattcctgtggatactagtaaacctaaccctaacaacctcgaatacgataatc
28412100
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AGI:
At1g75650.1
Description:
pre-tRNA. tRNA-Glu (anticodon: CTC)
Range:
from: 28411645
to: 28411717
Orientation: Forward
Links:
TAIR
MIPS
AGI:
At1g75660.1
Description:
XRN3 (5'-3' exoribonuclease 3); 5'-3' exoribonuclease. similar to XRN2 (EXORIBONUCLEASE 2), 5'-3' exonuclease/ nucleic acid binding [Arabidopsis thaliana] (TAIR:AT5G42540.1); similar to hypothetical protein OsJ_004151 [Oryza sativa (japonica cultivar-group)] (GB:EAZ14326.1); similar to putative 5-3 exoribonuclease [Oryza sativa (japonica cultivar-group)] (GB:BAB86550.1); similar to hypothetical protein OsI_004507 [Oryza sativa (indica cultivar-group)] (GB:EAY76660.1); contains InterPro domain Zinc finger, CCHC-type; (InterPro:IPR001878); contains InterPro domain Putative 5-3 exonuclease; (InterPro:IPR004859); contains InterPro domain Exonucle
Range:
from: 28411808
to: 28418778
Orientation: Forward
Links:
TAIR
MIPS
Please cite the corresponding
publications
when using AthaMap.