Home Tools   - Search   - Colocalization   - Gene Analysis   - Gene Identification   - Small RNA Targets   - MicroRNA Targets Description Documentation Citations Downloads Publications History Contact Links Disclaimer	Search   Chromosome 1 Chromosome 2 Chromosome 3 Chromosome 4 Chromosome 5    Position Exon region Intron region UTR region AGI % Restriction to highly conserved TF binding sites (0-100)   Go to graphical and table display  1        10        20        30        40        50        60        70        80        90        100                                                                             --------->HSFB2a(2)                                                                      <---------At4g35610                                                                   <---------ANAC58--------->ARR11(3)                                                                   <---------ANAC58<---------ARR11(3)              ---------->DOF2                    --------->At4g35610  --------->At4g35610<---------YAB1           ----------->RAV1(1)              --------->WOX13(1)<---------ICU4--------->LBD16          --------->REM1(1)               <---------YAB1     --------->ICU4<---------HSFB2a(2)   <---------AHL20(2)                  <---------YAB1        <---------ATHB51   <------ZmHOX2a(1)   catatataatctacaacaaagagaacaacaccatgtccagcattataaatcaactcaaatgccataatggctagcttccagaggacatcttataattcag  28202100                                                       <---------YAB1                                                     --------->ATHB12                   --------->At4g35610                                                    --------->ICU4                     <---------ARR11(3)                                                    <---------YAB1                     --------->ARR11(3)                                               <---------ZAT14                     --------->YAB1                         <---------GLK1(2)  ------>MYB46(1)                     <----------DOF2                    ----------->RAV1(1)     ------>MYB83                    <-----------GT1               --------->HSFB2a(2)       --------->DEAR3(2)             <---------TOE2(3)------>ZmHOX2a(2)               <---------HSFB2a(2)     --------->MYB52(1)       --------->YAB1 --------->TOE2(3)-----   aacacaactctagagctctagaccacagaatttcaaaaaacaaaccgactgtacatgattagagtataagaactaagtttacctttgatgatctgaagtt  28202200                                                               ------>ZmHOX2a(2)                                  --------->MYB46(3)      <------NtERF2                                 --------->ANAC58       <---------DEAR3(1)                                 --------->ANAC58      <---------ORA47(1)          <---------ANAC58      ------->TEIL           --------->RAP2.6(3)               <------MYB83          <---------ANAC58     <---------ALFIN1        --------->SPL7                    <------MYB46(1)     --------->ATHB12        --------->ANAC58         ===============HOX2a_HOX2a       <--------P     <---------ICU4          --------->ANAC58         <------ZmHOX2a(1)       <---------LBD16<-------     -------->ATHB1     --------->ZAT18          ------>MYB83  --------->ANAC58      --------->ATHB12    <---------ATHB12    <---------ZAT18          -------->P    --------->ANAC58 --------->LBD16    <-    <---------YAB1      <---------ZAT14     --------->GLK1(2) <------ZmHOX2a(2)--------->ANAC46  ----    --------->ICU4      --------->ZAT14---------->DOF2================HOX2a_HOX2a    <---------MYB46(3) ---->WRKY12   --------->YAB1--------->ANAC46    ------>MYB46(1)   --------->GLK1(1)<---------AtMYB61   gacgaaatcattgggtatcaaaatagtgcagacgcacccgataaagattccaaccaggacggcgatcgcaattccacattcgcggaatggttggactttc  28202300                 <---------------AGL15                 --------------->AGL15                ----------------->AG                =============================================================MADS_MADS        --------->ANAC58        --------->RAP2.6(2)        --------->DREB2C(2)        ------->GAMYB        --------->ANAC46        --------->DEAR3(1)                                       --------->AHL20(2)       <------------AtMYB77                                      <---------AHL20(2)       --------->DEAR3(2)                                     ------>MYB46(1)       --------->MYB46(3)          ----------->GT1            ------>MYB83      ------->TEIL               ---------->DOF2    <-------TEIL--------->AHL20(2)     --------->ARR14(2)         --------->LBD16    --------->CCA1(2)            <----------DOF2 ---DOF2--------->ANAC58       --------->ANAC46   --------->ARR11(3)  <-----------GT1               - ---------DOF2  ----------------->AGL3      ----------->GT1 <---------MYB59 <----------DOF2     ----- ----------------->WRI1<---------TOE2(3)---------->DOF2    ----------------->AGL3               <----   tctttacgaaccgccattgccaattgaagttatccgaaagtaaaaagagtaagatacagtaaccaaattaataaacccctttctttcttctgtgatcaaa  28202400                                                                                           <---------TOE2(3)                                                                                           ----------                                                                             <---------WRKY45                                                                             <---------WRKY38(1)                                                                             <---------WRKY12                                                               *TSS         <<<<<<<<<<WRKY62                                                           <---------At4g35610            <----------                                                           --------->At4g35610---------->DOF2      <---------ZAT6       --------->ATHB12              --------->ANAC58   --------->WRKY18(1) ----->ZmHOX2a(1)         <---------YAB1                 --------->ANAC46   <<<<<<<<<<WRKY40 ---->ARR14(2)          <-----------GT1                  --------->ANAC58   <<<<<<<<<<WRKY18 -------- -----ARR14(2)   --------->TOE2(3)                   <-----------GT1       <-----------HVH21---------   tcctagtagtgcaagttaatcttatataaccattgattttggtttcaatgttttttaacacggctgaagttgttcttggtcaaaggccatattaacaata  28202500                                                                                   <----------TaMYB80                                                                                  --------->AHL20(1)                                                                                  <---------AHL20(1)                                                         <-----------GT1          <---------AHL20(2)                                         --------->At4g35610                     --------->AHL20(2)                                         <---------At4g35610---------->DOF2      --------->YAB1                                   ------>MYB46(1)    <---------ICU4            <---------YAB1      <                                   ------>MYB83       <---------AHL20(2)      <---------AHL20(2)    - -->CBF                          <---------MYB59--------->YAB1               --------->AHL20(2)     - -GT1                            <---------MYB46(2)  --------->ICU4          <---------AHL20(2)------ ->YAB1                        --------->MYB52(1)    --------->AHL20(2)   --------->AHL20(2)   <----- >ZAT6                        <-----------GT1   --------->TOE2(3)  <------ZmHOX2a(1) <-----------GT1-   acatctaactaggtagagaggtttaggcagaattaccgaactcagcacaaccatatttattacaaagcaggaccgattatttattatattcccctcaaat  28202600                                          --------->MYB52(1)                                       --------->ANAC58                                       --------->ANAC55(2)                                       --------->ANAC58                                       <---------ANAC55(2)      <---------MYB52(1)                                       --------->TGA1a         <------MYB83                               <-------MYC2                    <------MYB46(1)                               ------->MYC2                  <---------ANAC46                               ------->MYC3  ----------->HVH21<---------------AtSPL3                               <-------MYC3----------->RAV1(2)<---------MYB46(3)                              --------->ANAC46              <---------ZAT2          --------->ZAT6      --------->ANAC58      ----------->HVH21       ------>NtERF2 ---------ALFIN1              --------->ANAC58    --------->ANAC55(2)----------->HVH21 -------->ANAC46             ------->TEIL ------->TEIL     ------>NtERF2 --------->LBD16 -------->ANAC58       <---------ATHB12<---------TGA1a    <---------RAP2.6(2)                 ------>ZmHOX2a(1) --->ARR14(2)       --------->TOE1(2)  --------->ANAC46   <---------RAP2.3(3)  ----------->RAV1(1) ----ARR14(2)       --------->TOE2(2) <---------TOE1(2)<---------ANAC46<---------LBD16  <---------HSFC1(2) -------->ANAC58 <-----------GT1 <-----------HVH21<---------ANAC55(2)<---------ZAT14    --------->HSFC1(2)   ccacaccattcaacactattaacctatgatgcacgcgtctcacgtacctgaaacgtgatgggggctggtacttcacggggacaacagggaaacatcctct  28202700                                  --------->ANAC55(2)                              <---------MYB52(2)                         --------->ANAC58                                           <----------DOF2                         --------->ANAC58                                           <---------DAG2                      <------NtERF2                                 <---------RVE1(1)     --------->AHL20(2)                    --------->ANAC58                                <---------CCA1(1)     <---------AHL20(2)                    <---------DEAR3(1)                       --------->YAB1<---------ANAC58                    --------->ANAC58          --------->HSFB2a(1)  --------->ARR11(3)    --------->YAB1                   --------->SPL7 <---------ANAC55(2)   <---------ATHB12   <---------ANAC58      <---                   --------->RAP2.6(3)        <---------HSFB2a(1)  <---------ARR11(3)   <------------   aaacgtttcatgaaacagagggacggcaagcaaaaaacgtgatggagaacgtttcccaaacatttatgagatattttaggtgtcccctttataaaaatag  28202800                   <---------ARR11(3)        <---------TOE2(3)                                              <---------MYB52(1)      ---------->DOF2                                             ------>MYB46(1)              ------  --------->AHL20(2)                                              ------>MYB83                -------  <---------AHL20(2)     <---------YAB1                           --------->MYB52(1)        --------- ---ZmHOX2a(1)     --------->ARR11(3)                           <---------MYB59          --------->YAB1 ---AGL15      ---------->DOF2 ----------->GT1---------->DOF2   --------->AtMYB61    --------->At4g35610   gaaatttataaaggaataaaagagcttattctagggtttaatattagtaaaagctgtatacaaaaaccaaaccgttttcgagttctcagaagcataaaga  28202900                                                                        --------->YAB1                                                                        --------->TOE2(3)                                                                       ----------->GT1      --------->YAB1                                               --------->ZAT14     <---------ATHB12     --------->ZAT6      --------->At4g35610  <---------ZAT14 --->YAB1               -------->P      ------>ZmHOX2a(1)     ------->TEIL -->ICU4          <------ZmHOX2a(1)   ----------------->AG   <-----------GT1 ->DOF2      --------->TOE2(2)     <----------DOF2        --------------->AtSPL8---------->DOF2   tgatcaaatcataaacctaaggagtctaccagtactcctttcctaagcagttgagacatttttgtaccctgcaatgttaaaacaaagtttccaaatttta  28203000  Previous    Next  AGI:  At1g75120.1    Description:  RRA1 (REDUCED RESIDUAL ARABINOSE 1). similar to RRA2 (REDUCED RESIDUAL ARABINOSE 2) [Arabidopsis thaliana] (TAIR:AT1G75110.1); similar to unnamed protein product [Vitis vinifera] (GB:CAO61198.1); contains InterPro domain Reticulon; (InterPro:IPR003388) Range:  from: 28200518    to: 28202463    Orientation: Reverse Links:  TAIR  MIPS      Please cite the corresponding publications when using AthaMap.
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