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Chromosome 1
Chromosome 2
Chromosome 3
Chromosome 4
Chromosome 5
Position
Exon region
Intron region
UTR region
AGI
% Restriction to highly conserved TF binding sites (0-100)
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1 10 20 30 40 50 60 70 80 90 100
--------->
HSFB2a(2)
<---------
At4g35610
<---------
ANAC58
--------->
ARR11(3)
<---------
ANAC58
<---------
ARR11(3)
---------->
DOF2
--------->
At4g35610
--------->
At4g35610
<---------
YAB1
----------->
RAV1(1)
--------->
WOX13(1)
<---------
ICU4
--------->
LBD16
--------->
REM1(1)
<---------
YAB1
--------->
ICU4
<---------
HSFB2a(2)
<---------
AHL20(2)
<---------
YAB1
<---------
ATHB51
<------
ZmHOX2a(1)
catatataatctacaacaaagagaacaacaccatgtccagcattataaatcaactcaaatgccataatggctagcttccagaggacatcttataattcag
28202100
<---------
YAB1
--------->
ATHB12
--------->
At4g35610
--------->
ICU4
<---------
ARR11(3)
<---------
YAB1
--------->
ARR11(3)
<---------
ZAT14
--------->
YAB1
<---------
GLK1(2)
------>
MYB46(1)
<----------
DOF2
----------->
RAV1(1)
------>
MYB83
<-----------
GT1
--------->
HSFB2a(2)
--------->
DEAR3(2)
<---------
TOE2(3)
------>
ZmHOX2a(2)
<---------
HSFB2a(2)
--------->
MYB52(1)
--------->
YAB1
--------->
TOE2(3)
-----
aacacaactctagagctctagaccacagaatttcaaaaaacaaaccgactgtacatgattagagtataagaactaagtttac
ctttgatgatctgaagtt
28202200
------>
ZmHOX2a(2)
--------->
MYB46(3)
<------
NtERF2
--------->
ANAC58
<---------
DEAR3(1)
--------->
ANAC58
<---------
ORA47(1)
<---------
ANAC58
------->
TEIL
--------->
RAP2.6(3)
<------
MYB83
<---------
ANAC58
<---------
ALFIN1
--------->
SPL7
<------
MYB46(1)
--------->
ATHB12
--------->
ANAC58
===============
HOX2a_HOX2a
<--------
P
<---------
ICU4
--------->
ANAC58
<------
ZmHOX2a(1)
<---------
LBD16
<-------
-------->
ATHB1
--------->
ZAT18
------>
MYB83
--------->
ANAC58
--------->
ATHB12
<---------
ATHB12
<---------
ZAT18
-------->
P
--------->
ANAC58
--------->
LBD16
<-
<---------
YAB1
<---------
ZAT14
--------->
GLK1(2)
<------
ZmHOX2a(2)
--------->
ANAC46
----
--------->
ICU4
--------->
ZAT14
---------->
DOF2
================
HOX2a_HOX2a
<---------
MYB46(3)
---->
WRKY12
--------->
YAB1
--------->
ANAC46
------>
MYB46(1)
--------->
GLK1(1)
<---------
AtMYB61
gacgaaatcattgggtatcaaaatagtgcagacgcacccgataaagattccaaccaggacggcgatcgcaattccacattcgcggaatggttggactttc
28202300
<---------------
AGL15
--------------->
AGL15
----------------->
AG
=============================================================
MADS_MADS
--------->
ANAC58
--------->
RAP2.6(2)
--------->
DREB2C(2)
------->
GAMYB
--------->
ANAC46
--------->
DEAR3(1)
--------->
AHL20(2)
<------------
AtMYB77
<---------
AHL20(2)
--------->
DEAR3(2)
------>
MYB46(1)
--------->
MYB46(3)
----------->
GT1
------>
MYB83
------->
TEIL
---------->
DOF2
<-------
TEIL
--------->
AHL20(2)
--------->
ARR14(2)
--------->
LBD16
--------->
CCA1(2)
<----------
DOF2
---
DOF2
--------->
ANAC58
--------->
ANAC46
--------->
ARR11(3)
<-----------
GT1
-
---------
DOF2
----------------->
AGL3
----------->
GT1
<---------
MYB59
<----------
DOF2
-----
----------------->
WRI1
<---------
TOE2(3)
---------->
DOF2
----------------->
AGL3
<----
tctttacgaaccgccat
tgccaattgaagttatccgaaagtaaaaagagtaagatacagtaaccaaattaataaacccctttctttcttctgtgatcaaa
28202400
<---------
TOE2(3)
----------
<---------
WRKY45
<---------
WRKY38(1)
<---------
WRKY12
*
TSS
<<<<<<<<<<
WRKY62
<---------
At4g35610
<----------
--------->
At4g35610
---------->
DOF2
<---------
ZAT6
--------->
ATHB12
--------->
ANAC58
--------->
WRKY18(1)
----->
ZmHOX2a(1)
<---------
YAB1
--------->
ANAC46
<<<<<<<<<<
WRKY40
---->
ARR14(2)
<-----------
GT1
--------->
ANAC58
<<<<<<<<<<
WRKY18
--------
-----
ARR14(2)
--------->
TOE2(3)
<-----------
GT1
<-----------
HVH21
---------
tcctagtagtgcaagttaatcttatataaccattgattttggtttcaatgttttttaacacgg
ctgaagttgttcttggtcaaaggccatattaacaata
28202500
<----------
TaMYB80
--------->
AHL20(1)
<---------
AHL20(1)
<-----------
GT1
<---------
AHL20(2)
--------->
At4g35610
--------->
AHL20(2)
<---------
At4g35610
---------->
DOF2
--------->
YAB1
------>
MYB46(1)
<---------
ICU4
<---------
YAB1
<
------>
MYB83
<---------
AHL20(2)
<---------
AHL20(2)
-
-->
CBF
<---------
MYB59
--------->
YAB1
--------->
AHL20(2)
-
-
GT1
<---------
MYB46(2)
--------->
ICU4
<---------
AHL20(2)
------
->
YAB1
--------->
MYB52(1)
--------->
AHL20(2)
--------->
AHL20(2)
<-----
>
ZAT6
<-----------
GT1
--------->
TOE2(3)
<------
ZmHOX2a(1)
<-----------
GT1
-
acatctaactaggtagagaggtttaggcagaattaccgaactcagcacaaccatatttattacaaagcaggaccgattatttattatattcccctcaaat
28202600
--------->
MYB52(1)
--------->
ANAC58
--------->
ANAC55(2)
--------->
ANAC58
<---------
ANAC55(2)
<---------
MYB52(1)
--------->
TGA1a
<------
MYB83
<-------
MYC2
<------
MYB46(1)
------->
MYC2
<---------
ANAC46
------->
MYC3
----------->
HVH21
<---------------
AtSPL3
<-------
MYC3
----------->
RAV1(2)
<---------
MYB46(3)
--------->
ANAC46
<---------
ZAT2
--------->
ZAT6
--------->
ANAC58
----------->
HVH21
------>
NtERF2
---------
ALFIN1
--------->
ANAC58
--------->
ANAC55(2)
----------->
HVH21
-------->
ANAC46
------->
TEIL
------->
TEIL
------>
NtERF2
--------->
LBD16
-------->
ANAC58
<---------
ATHB12
<---------
TGA1a
<---------
RAP2.6(2)
------>
ZmHOX2a(1)
--->
ARR14(2)
--------->
TOE1(2)
--------->
ANAC46
<---------
RAP2.3(3)
----------->
RAV1(1)
----
ARR14(2)
--------->
TOE2(2)
<---------
TOE1(2)
<---------
ANAC46
<---------
LBD16
<---------
HSFC1(2)
-------->
ANAC58
<-----------
GT1
<-----------
HVH21
<---------
ANAC55(2)
<---------
ZAT14
--------->
HSFC1(2)
ccacaccattcaacactattaacctatgatgcacgcgtctcacgtacctgaaacgtgatgggggctggtacttcacggggacaacagggaaacatcctct
28202700
--------->
ANAC55(2)
<---------
MYB52(2)
--------->
ANAC58
<----------
DOF2
--------->
ANAC58
<---------
DAG2
<------
NtERF2
<---------
RVE1(1)
--------->
AHL20(2)
--------->
ANAC58
<---------
CCA1(1)
<---------
AHL20(2)
<---------
DEAR3(1)
--------->
YAB1
<---------
ANAC58
--------->
ANAC58
--------->
HSFB2a(1)
--------->
ARR11(3)
--------->
YAB1
--------->
SPL7
<---------
ANAC55(2)
<---------
ATHB12
<---------
ANAC58
<---
--------->
RAP2.6(3)
<---------
HSFB2a(1)
<---------
ARR11(3)
<------------
aaacgtttcatgaaacagagggacggcaagcaaaaaacgtgatggagaacgtttcccaaacatttatgagatattttaggtgtcccctttataaaaatag
28202800
<---------
ARR11(3)
<---------
TOE2(3)
<---------
MYB52(1)
---------->
DOF2
------>
MYB46(1)
------
--------->
AHL20(2)
------>
MYB83
-------
<---------
AHL20(2)
<---------
YAB1
--------->
MYB52(1)
---------
---
ZmHOX2a(1)
--------->
ARR11(3)
<---------
MYB59
--------->
YAB1
---
AGL15
---------->
DOF2
----------->
GT1
---------->
DOF2
--------->
AtMYB61
--------->
At4g35610
gaaatttataaaggaataaaagagcttattctagggtttaatattagtaaaagctgtatacaaaaaccaaaccgttttcgagttctcagaagcataaaga
28202900
--------->
YAB1
--------->
TOE2(3)
----------->
GT1
--------->
YAB1
--------->
ZAT14
<---------
ATHB12
--------->
ZAT6
--------->
At4g35610
<---------
ZAT14
--->
YAB1
-------->
P
------>
ZmHOX2a(1)
------->
TEIL
-->
ICU4
<------
ZmHOX2a(1)
----------------->
AG
<-----------
GT1
->
DOF2
--------->
TOE2(2)
<----------
DOF2
--------------->
AtSPL8
---------->
DOF2
tgatcaaatcataaacctaaggagtctaccagtactcctttcctaagcagttgagacatttttgtaccctgcaatgttaaaacaaagtttccaaatttta
28203000
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AGI:
At1g75120.1
Description:
RRA1 (REDUCED RESIDUAL ARABINOSE 1). similar to RRA2 (REDUCED RESIDUAL ARABINOSE 2) [Arabidopsis thaliana] (TAIR:AT1G75110.1); similar to unnamed protein product [Vitis vinifera] (GB:CAO61198.1); contains InterPro domain Reticulon; (InterPro:IPR003388)
Range:
from: 28200518
to: 28202463
Orientation: Reverse
Links:
TAIR
MIPS
Please cite the corresponding
publications
when using AthaMap.