Home Tools   - Search   - Colocalization   - Gene Analysis   - Gene Identification   - Small RNA Targets   - MicroRNA Targets Description Documentation Citations Downloads Publications History Contact Links Disclaimer	Search   Chromosome 1 Chromosome 2 Chromosome 3 Chromosome 4 Chromosome 5    Position Exon region Intron region UTR region AGI % Restriction to highly conserved TF binding sites (0-100)   Go to graphical and table display  1        10        20        30        40        50        60        70        80        90        100                                            --------->YAB1                                         <---------ATHB12                                   <---------ARR11(3)                                   --------->ARR11(3)                                      <---------ICU4                                   <-----------ARR10                                      <---------YAB1 ---->YAB1                        --------->RVE1(1)             <---------ARR11(3)        --------->ICU4 ----YAB1                     <---------AHL20(2)             <-----------GT1   <-----------RAV1(1) --ICU4                      --------->YAB1   --------->AHL20(2)--------->ARR11(3)     --------->WRKY18(1) ->YAB1            <---------ZAT6 --------->CCA1(1)       --------->YAB1   <---------------AGL15 >ICU4         <---------ZAT14--------->AHL20(2)      ---------->DOF2    --------->At4g35610   aaagttttatgaactagtctagtgtaacttataaaaatatctaatcaaaaaaatgaaaaagaataacatcttatcaactcaatgtggcagtcaagattac  24860000                                                                       ----------->GT1                                                          --------->ANAC46       ====================                 ----------->GT1                          --------->ANAC58       ---------->DOF2                <-------TEIL                              --------->ANAC58     <---------HSFB2a(2)         <---------HSFB2a(2) ---------->DOF2        ------->TEIL   <---------TOE2(3)                -     --------->GLK1(1)  <-------TEIL          <-------TEIL--------->AtLEC2  <---------YAB1<---------CCA1(2)   atttgagaaatcgagaaattcgtaaattcatcaaagtaacatttgaaatacatgaatttcaagcaaattgatgatgttattctaaaagtctcatatcaac  24860100                   <-----------HVH21                   <-----------TGA1                  --------->bZIP60(2)                  --------->O2                  =============================================bZIP_DOF            <---------TOE2(3)                           ---------->DOF2       <----------DOF2                              ---------->DOF2       =====================bZIP_DOF           <---------------AGL15    ---------->DOF2            <-   --------->YAB1 --------->TGA1a              --------------->AGL15   <------ZmHOX2a(1)        ----- ===========================bZIP_DOF    --------->AHL20(2)          <---------LBD16         <-------- -------->YAB1<------ZmHOX2a(1)         <---------AHL20(2)----------->GT1                ----------->HVH21   aaaaatcatcttttaaggactcgtcagtgccactaattgtttttaatttccatcaaaagaaagttataaaccaggaaaggaagagagagacctgatagat  24860200                                                                        --------->AtMYB61                                                                       --------->O2                                                                       --------->At4g35610                                                                       --------->TGA1a                                                                       --------->bZIP60(2)                                                                       <---------At4g35610                                                                       --------->ANAC46                                                                ------>ZmHOX2a(2)                                                                <---------ANAC58             ------>ZmHOX2a(1)                                 --------->HSFB2a(2)            <---------ANAC58         <---------MYB52(1)                                 <---------HSFB2a(2)            ====================================HOX2a_HOX2a                                --------->ZAT14       <-----------RAV1(1)                --------->ARR14(2)                         ----------->HVH21            --------->ALFIN1------>NtERF2      <---------ARR14(2)     <---------ALFIN1--------->At4g35610         ----------->RAV1(1) <---------ALFIN1  --------->DEAR3(1) -----ZmHOX2a(1)   <-----------RAV1(2)  <------ZmHOX2a(2)  <---------ANAC58         --------->ANAC46 ---->CCA1(2)     --------->At4g35610  --------->ARR11(3)  <---------ANAC58        --------->MYB46(3) -WOX13(1)        <---------At4g35610  <---------ARR11(3) <---------At4g35610   <---------ALFIN1-----   aggagccccaagtttgtggtagcagatgggacagtccagaagatcaagctccaacagtgttgctgatcgtgccacctcacttccactcgccgttcctcca  24860300                                                                                                    -                                                                                                  <--                   <----------DOF2                                                              <----                <---------ARR11(3)                                                              <----       --------->AtLEC2         <---------ORA47(1)                                          ---------     <---------AtLEC2      <----------DOF2   ------>ZmHOX2a(2)                       <------ZmHOX2a(1) ------>RAV1(1) --------->ARR11(3) <-----------HVH21                               <---------TOE1(2)<   acattctccatggagacaggtctttgcctctttggacggtcgagggatcgctcggagttattcgtgatgttttccatctctatcgaaggataagagatga  24860400 -------->SPL7 -------SPL7 -----------AtSPL8 -----------AtSPL3                      ------------>CBF   ------>ZmHOX2a(1) >CCA1(2)             <-----------TBP  ------>NtERF2      --------->TOE2(3)------->TEIL             - -------TEIL        --------------->AGL15             <----------DOF2------>ZmHOX2a(1)      <--------   ggtacggtgtcttaagacttcgctacttatagatagaacgatgccaatagaccctactttccttatacttcctgttgaacgttttttaaaagttttcatt  24860500                       --------->ANAC58                       --------->ANAC58                    ----------->TGA1                            <---------ARR11(3)                    ----------->HVH21                           <-----------ARR10                --------->ALFIN1                                --------->ARR11(3)              <-----------RAV1(1)               --------->REM1(1)           ------>ZmHOX2a(1)                   <-------TEIL     --------->GLK1(2)       --------->ARR14(2)                  --------------->AtSPL8                                 <--       --------->GLK1(2)         <---------At4g35610   <---------HSFB2a(2)                        <-- -------->CCA1(2)<---------MYB46(3)     <-----------GT1--------->HSFB2a(2)   --------->YAB1    ------ -YAB1 <---------ARR14(2)   <---------YAB1 <---------------AtSPL8         <----------DOF2     <------   agatttgagaatccttatgtgggtgacgctatgttagcttatttacaggtacatcttatagaagaaaatctagcctctttaatatttgaatttgtttctc  24860600                           --------->TOE2(3)                           --------->YAB1                        <----------DOF2               --------->AHL20(1)                                                               <----               <---------AHL20(1)                                                               -----      ----------->GT1<-----------GT1           <------ZmHOX2a(1)                 --------->ANAC58 -------DAG2   --------->AHL20(2)         --------->YAB1                         --------->ANAC58 --------DOF2  <---------AHL20(2)        <---------YAB1              --------->ZAT14          ------- ---->ID1     --------->AHL20(2)       --------->YAB1                <---------ZAT14 ----------->GT1 -----GT1     <---------AHL20(2)    <----------DOF2                 <----------DOF2---------->DOF2  <   ctttttgaatgtaaaattaaatttttctttcttaatttcttttataataggataactaagagtctaaagactttactgcaaacaagaaagaaaaaaaaaa  24860700                     --------------------->WRI1                     ------>ZmHOX2a(1)                   ------>ZmHOX2a(2)                 --------->ARR11(3)                 <---------ARR11(3)                 --------->ARR14(2)                 <---------ARR14(2)      --------->AHL20(1)      --------->ARR11(3)      <---------ARR11(3)                                                          --------->ZAT14      <---------AHL20(1)                                                          <---------ZAT14     --------->CCA1(2)   ---------->ID1                                --------->ANAC46 -----------AtSPL8<------ZmHOX2a(2)                                    --------->ANAC58 ---->DAG2      --------->GLK1(1)        <---------YAB1                --------->ANAC58 --->DOF2    <---------LBD16        <---------ICU4<-------TEIL        <---------LBD16       ------->GAMYB -------TEIL<---------LBD16 <----------DOF2  --------->AHL20(2)      --------->MYB52(1)  ----------->RAV1(1)   ggttcagatatatttcagggatcctttgttctttttgaacattacgataaaatacattcgaaaatacaaattcacggatgaaagtttactgcaacagaaa  24860800                                                                <--------HAHB4                                                                --------->YAB1                                                                --------->ATHB51                                                                --------->ATHB12                                                                <---------ICU4                                                                <---------AHL20(2)                                         <---------ICU4         -------->HAHB4                                         --------->ATHB12       -------->ATHB1                                      <------------CBF         <---------YAB1                          <---------AHL20(2)                   <---------ATHB51           ------------>CBF         <---------YAB1             --------->ICU4            <---------AHL20(2)       <---------YAB1    <---------AHL20(1)                 <---------YAB1               --------->AHL20(2)       --------->ANAC46  <---------AHL20(2)                <---------ARR11(3)          --------->YAB1     <-----------GT1     --------->AHL20(2)   <---------ANAC55(2)                ----------->GT1    -   <----------DOF2  ------------>CBF<---------AHL20(2)     --------->ARR11(3)   ----------->GT1<-----   actgtctttacgatacaatacattcaattttttttagttttattgattacatatgttccaagataattattagataaaacagatgttaaaaataaatatg  24860900  Previous    Next  AGI:  At1g66630.1    Description:  seven in absentia (SINA) family protein. Identical to E3 ubiquitin-protein ligase SINA-like 3 [Arabidopsis Thaliana] (GB:Q9C6H2); similar to seven in absentia (SINA) protein, putative [Arabidopsis thaliana] (TAIR:AT1G66620.1); similar to SIAH1 protein [Brassica napus var. napus] (GB:CAB89182.1); contains InterPro domain Seven in absentia protein; (InterPro:IPR004162); contains InterPro domain SIAH-type (InterPro:IPR013323); contains InterPro domain TRAF-like (InterPro:IPR008974); contains InterPro domain Zinc finger, SIAH-type; (InterPro:IPR013010); contains InterPro domain Zinc finger, RING-type; (InterPro:IPR001841) Range:  from: 24858949    to: 24860377    Orientation: Reverse Links:  TAIR  MIPS      Please cite the corresponding publications when using AthaMap.
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