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Chromosome 1
Chromosome 2
Chromosome 3
Chromosome 4
Chromosome 5
Position
Exon region
Intron region
UTR region
AGI
% Restriction to highly conserved TF binding sites (0-100)
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1 10 20 30 40 50 60 70 80 90 100
--------->
YAB1
<---------
ATHB12
<---------
ARR11(3)
--------->
ARR11(3)
<---------
ICU4
<-----------
ARR10
--------->
ICU4
---->
YAB1
--------->
RVE1(1)
<---------
ARR11(3)
<---------
YAB1
----
YAB1
<---------
AHL20(2)
<-----------
GT1
<-----------
RAV1(1)
--
ICU4
--------->
YAB1
--------->
AHL20(2)
--------->
ARR11(3)
--------->
WRKY18(1)
->
YAB1
<---------
ZAT6
--------->
CCA1(1)
--------->
YAB1
<---------------
AGL15
>
ICU4
<---------
ZAT14
--------->
AHL20(2)
---------->
DOF2
--------->
At4g35610
aaagttttatgaactagtctagtgtaacttataaaaatatctaatcaaaaaaatgaaaaagaataacatcttatcaactcaatgtggcagtcaagattac
24860000
----------->
GT1
--------->
ANAC58
---------->
DOF2
----------->
GT1
--------->
ANAC46
====================
<-------
TEIL
--------->
AtLEC2
<---------
HSFB2a(2)
<---------
HSFB2a(2)
---------->
DOF2
------->
TEIL
<---------
TOE2(3)
-
--------->
GLK1(1)
<-------
TEIL
<-------
TEIL
--------->
ANAC58
<---------
YAB1
<---------
CCA1(2)
atttgagaaatcgagaaattcgtaaattcatcaaagtaacatttgaaatacatgaatttcaagcaaattgatgatgttattctaaaagtctcatatcaac
24860100
<-----------
HVH21
<-----------
TGA1
--------->
O2
--------->
bZIP60(2)
=============================================
bZIP_DOF
<---------
TOE2(3)
---------->
DOF2
<----------
DOF2
---------->
DOF2
=====================
bZIP_DOF
<---------------
AGL15
---------->
DOF2
<-
--------->
YAB1
--------->
TGA1a
--------------->
AGL15
<------
ZmHOX2a(1)
-----
===========================
bZIP_DOF
--------->
AHL20(2)
<---------
LBD16
<--------
-------->
YAB1
<------
ZmHOX2a(1)
<---------
AHL20(2)
----------->
GT1
----------->
HVH21
aaaaatcatcttttaaggactcgtcagtgccactaattgtttttaatttccatcaaaagaaagttataaaccaggaaaggaagagagagac
ctgatagat
24860200
--------->
AtMYB61
--------->
O2
--------->
At4g35610
--------->
TGA1a
--------->
bZIP60(2)
<---------
At4g35610
--------->
ANAC46
------>
ZmHOX2a(2)
<---------
ANAC58
------>
ZmHOX2a(1)
--------->
HSFB2a(2)
<---------
ANAC58
--------->
ARR14(2)
<---------
HSFB2a(2)
====================================
HOX2a_HOX2a
--------->
ZAT14
<-----------
RAV1(1)
<---------
MYB52(1)
----------->
HVH21
--------->
ALFIN1
------>
NtERF2
<---------
ARR14(2)
<---------
ALFIN1
--------->
At4g35610
----------->
RAV1(1)
<---------
ALFIN1
--------->
DEAR3(1)
-----
ZmHOX2a(1)
<-----------
RAV1(2)
<------
ZmHOX2a(2)
<---------
ANAC58
--------->
ANAC46
---->
CCA1(2)
--------->
At4g35610
--------->
ARR11(3)
<---------
ANAC58
--------->
MYB46(3)
-
WOX13(1)
<---------
At4g35610
<---------
ARR11(3)
<---------
At4g35610
<---------
ALFIN1
-----
aggagccccaagtttgtggtagcagatgggacagtccagaagatcaagctccaacagtgttgctgatcgtgccacctcacttccactcgccgttcctcca
24860300
<
<--
<----------
DOF2
<----
<---------
ARR11(3)
<----
--------->
AtLEC2
<---------
ORA47(1)
---------
<---------
AtLEC2
<----------
DOF2
------>
ZmHOX2a(2)
<------
ZmHOX2a(1)
------>
RAV1(1)
--------->
ARR11(3)
<-----------
HVH21
<---------
TOE1(2)
-
acattctccatggagacaggtctttgcctctttggacggtcgagggatcgctcggagttattcgtgatgttttccat
ctctatcgaaggataagagatga
24860400
-------
TEIL
-------
SPL7
-----------
AtSPL3
-----------
AtSPL8
------------>
CBF
------>
ZmHOX2a(1)
>
CCA1(2)
<-----------
TBP
------>
NtERF2
--------->
TOE2(3)
------->
TEIL
-
-------->
SPL7
--------------->
AGL15
<----------
DOF2
------>
ZmHOX2a(1)
<--------
ggtacggtgtcttaagacttcgctacttatagatagaacgatgccaatagaccctactttccttatacttcctgttgaacgttttttaaaagttttcatt
24860500
--------->
ANAC58
--------->
ANAC58
----------->
HVH21
--------->
ARR11(3)
----------->
TGA1
--------->
GLK1(2)
--------->
ALFIN1
<---------
ARR11(3)
<-----------
RAV1(1)
--------->
REM1(1)
------>
ZmHOX2a(1)
<-------
TEIL
<-----------
ARR10
--------->
ARR14(2)
--------------->
AtSPL8
<--
--------->
GLK1(2)
<---------
At4g35610
--------->
HSFB2a(2)
<--
-------->
CCA1(2)
<---------
MYB46(3)
<-----------
GT1
<---------
HSFB2a(2)
--------->
YAB1
------
-
YAB1
<---------
ARR14(2)
<---------
YAB1
<---------------
AtSPL8
<----------
DOF2
<------
agatttgagaatccttatgtgggtgacgctatgttagcttatttacaggtacatcttatagaagaaaatctagcctctttaatatttgaatttgtttctc
24860600
--------->
YAB1
--------->
TOE2(3)
<----------
DOF2
--------->
AHL20(1)
<----
<---------
AHL20(1)
-----
----------->
GT1
<-----------
GT1
<------
ZmHOX2a(1)
--------->
ANAC58
-------
DAG2
--------->
AHL20(2)
--------->
YAB1
--------->
ANAC58
--------
DOF2
<---------
AHL20(2)
<---------
YAB1
<---------
ZAT14
-------
---->
ID1
--------->
AHL20(2)
--------->
YAB1
--------->
ZAT14
----------->
GT1
-----
GT1
<---------
AHL20(2)
<----------
DOF2
<----------
DOF2
---------->
DOF2
<
ctttttgaatgtaaaattaaatttttctttcttaatttcttttataataggataactaagagtctaaagactttactgcaaacaagaaagaaaaaaaaaa
24860700
------>
ZmHOX2a(1)
--------------------->
WRI1
------>
ZmHOX2a(2)
<---------
ARR14(2)
<---------
ARR11(3)
--------->
ARR11(3)
--------->
ARR14(2)
<---------
ARR11(3)
--------->
ARR11(3)
<---------
AHL20(1)
--------->
ZAT14
--------->
AHL20(1)
<---------
ZAT14
--------->
CCA1(2)
---------->
ID1
--------->
ANAC58
-----------
AtSPL8
<------
ZmHOX2a(2)
--------->
ANAC46
---->
DAG2
--------->
GLK1(1)
<---------
YAB1
--------->
ANAC58
--->
DOF2
<---------
LBD16
<---------
ICU4
<-------
TEIL
<---------
LBD16
------->
GAMYB
-------
TEIL
<---------
LBD16
<----------
DOF2
--------->
AHL20(2)
--------->
MYB52(1)
----------->
RAV1(1)
ggttcagatatatttcagggatcctttgttctttttgaacattacgataaaatacattcgaaaatacaaattcacggatgaaagtttactgcaacagaaa
24860800
--------->
ATHB12
--------->
YAB1
<---------
ICU4
--------->
ATHB51
-------->
ATHB1
-------->
HAHB4
<---------
ICU4
<--------
HAHB4
--------->
ATHB12
<---------
AHL20(2)
<------------
CBF
<---------
YAB1
<---------
AHL20(2)
--------->
ICU4
------------>
CBF
<---------
YAB1
<---------
ATHB51
--------->
AHL20(2)
--------->
ANAC46
<---------
AHL20(2)
<---------
YAB1
<---------
AHL20(2)
<---------
YAB1
<---------
AHL20(1)
<---------
ARR11(3)
--------->
YAB1
<-----------
GT1
--------->
AHL20(2)
<---------
ANAC55(2)
----------->
GT1
-
<----------
DOF2
------------>
CBF
<---------
AHL20(2)
--------->
ARR11(3)
----------->
GT1
<-----
actgtctttacgatacaatacattcaattttttttagttttattgattacatatgttccaagataattattagataaaacagatgttaaaaataaatatg
24860900
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AGI:
At1g66630.1
Description:
seven in absentia (SINA) family protein. Identical to E3 ubiquitin-protein ligase SINA-like 3 [Arabidopsis Thaliana] (GB:Q9C6H2); similar to seven in absentia (SINA) protein, putative [Arabidopsis thaliana] (TAIR:AT1G66620.1); similar to SIAH1 protein [Brassica napus var. napus] (GB:CAB89182.1); contains InterPro domain Seven in absentia protein; (InterPro:IPR004162); contains InterPro domain SIAH-type (InterPro:IPR013323); contains InterPro domain TRAF-like (InterPro:IPR008974); contains InterPro domain Zinc finger, SIAH-type; (InterPro:IPR013010); contains InterPro domain Zinc finger, RING-type; (InterPro:IPR001841)
Range:
from: 24858949
to: 24860377
Orientation: Reverse
Links:
TAIR
MIPS
Please cite the corresponding
publications
when using AthaMap.