Home Tools   - Search   - Colocalization   - Gene Analysis   - Gene Identification   - Small RNA Targets   - MicroRNA Targets Description Documentation Citations Downloads Publications History Contact Links Disclaimer	Search   Chromosome 1 Chromosome 2 Chromosome 3 Chromosome 4 Chromosome 5    Position Exon region Intron region UTR region AGI % Restriction to highly conserved TF binding sites (0-100)   Go to graphical and table display  1        10        20        30        40        50        60        70        80        90        100                   <---------MYB52(1)             --------->ARR14(1)            --------->ARR14(2)            <---------ARR14(2)            <---------ARR14(2)            --------->ARR14(2)            <---------GLK1(2)        ------>ZmHOX2a(1)         --------->LBD16          <------NtERF2                 <---------LBD16         <------ZmHOX2a(2)     <---------ARR14(2)         <---------ANAC58            <---------CCA1(2)          <---------ARR11(3)     --------->ARR14(2)         <---------RAP2.6(2)         <---------GLK1(2)      ---------->DOF2 ---------DOF2 --------->MYB59  <---------ANAC58      --------->GLK1(2)      --------->GLK1(1) -ZAT18  ------>ZmHOX2a(1)      <---------ANAC46     <---------GLK1(2)  ----------->GT1--------->ARR11(3) >ZAT18 <---------LBD16        ---------->ID1 --------->LBD16------->TEIL--------->At5g28300     <---   tctttggtatcctggattcggtagtcttcccttggcgtccttaagaaccgcataagattcttgaatctcggagacagtgaaatccaaaagatcaaggctc  24456500                                                           <------MYB83                                                           <------MYB46(1)                                                          <---------AtMYB61                                                          <---------MYB46(3)                                                     --------->LBD16                                                   <---------LBD16         --------->ANAC58                      <---------HSFB2a(1)         --------->ANAC55(2)                   --------->HSFC1(2)         <---------ANAC55(2)          <------ZmHOX2a(1)  <--------P              <-----------GT1         --------->ANAC58           <---------ANAC46--------->LBD16      --------->ARR14(2)         --------->ANAC46        --------->ALFIN1 <---------LBD16        <---------ARR14(2)         --------->ANAC55(1)    <-------GAMYB  <---------HSFC1(2)     <---------ANAC46              -     --------->CCA1(2)--------->TOE1(2)        --------->HSFB2a(1)    --------->ETT(1)        <------ ------LBD16         <---------ANAC55(2)     <---------GLK1(2)      <-----------HVH21     <---------MYB52(1)   tcggaagaaatacgcaatggaaaacgtgagagagggttgaggagatggaatctcccggagttggtgtccatgtcggatttgattatccagcccttactcg  24456600                                        <------ZmHOX2a(1)                                 ------->MYC4                                 <-------PIF4                                 ------->PIF5             --------->At4g35610                                 <-------MYC4             <---------ZAT2                                 ------->MYC2             --------->ZAT2                                 <-------MYC2             <---------At4g35610                                 ------->PIF4           <-----------RAV1(2)                                 <-------MYC3        <--------P                                 ------->MYC3        ==============================================MYC_MYB                                --------->TGA1a     ===============================================MYC_MYB                                <---------TGA1a  --------->LBD16                         ----------->RAV1(2)                                --------->ANAC58 ------>NtERF2                           ============                                --------->ANAC46--------->DEAR3(1)                       <---------TGA1a                                --------->ANAC55(2) <-------GAMYB                        --------->TGA1a                                --------->O2   <------NtERF2                             ============                                ============================MYC_MYB                      --------->O2                                --------->ANAC58<---------ANAC46                         <---------O2                                <---------O2   --------->ATERF1(1)               --------->HSFC1(2)                 --------->ANAC58<-------PIF5  <---------LBD16                   <---------HSFC1(2)                 --------->ANAC58<-----------HVH21<------NtERF2             <---------HSFC1(1)     <------ZmHOX2a(1)        <---------ALFIN1------>NtERF2                 --------->HSFC1(1)  <------ZmHOX2a(1)          <------NtERF2   --------->ANAC46               --------->HSFB2a(2) ----- -------->ALFIN1<---------LBD16 ==============================MYC_MYB       <---------HSFB2a(2) <---- ---LBD16      <---------ANAC46------->TEIL <---------ABI4(2)             ------>ZmHOX2a(1)--------->ALFIN1   gagaggaggagagagtgactcggaagaaggctgcacgtgagaggaacgcgccggggttgcagctgaagacatggtcctctagaagggtctcacttggggc  24456700                                                   --------->LBD16                                                  --------->DEAR3(1)                                                  <---------ANAC46                        <------NtERF2            <---------LBD16                       ------>NtERF2<---------GLK1(2)----------->HVH21            --------->WOX13(1)     <------ZmHOX2a(1)<------NtERF2    <--------P        <---------DEAR3(1)       --------->ANAC46   <-------GAMYB     --------->ZAT18<---------ARR14(2)                  --------->CCA1(2)  <---------ANAC46   --------->ATERF1(1)       --------->ANAC58      <---------YAB1 ============MYC_MYB <---------ZAT18--------->ARR14(2)        <---------ANAC58      <---------At4g35610 ==========MYC_MYB  <---------ATERF1(1)        --------->ANAC58  --------->ZAT18    --------->At4g35610 ------>HVH21      <---------DEAR3(1)       <---------REM1(2) <---------ANAC58 <---------GLK1(2) -----DEAR3(1)     <---------RAP2.3(3)   <<<<<<<<<TBF1       <------ZmHOX2a(1)<---------At4g35610   gatggggttgaagtcaatgagagggcgcctatggaaaggattcttcttcacgccggagacagaggagtgccatgatacacagatgctgctgaaacgcttg  24456800                             --------->AHL20(2)                        --------->RAP2.3(1)                        <------NtERF2                       <---------RAP2.3(1)                       <---------ATERF1(1)                       <---------ORA47(2)                       ------>NtERF2                       <---------DEAR4(2)           <---------TOE2(3)                       <---------ERF1               --------->MYB59                      --------->ATERF1(2)           --------->DAG2                      <---------RAP2.3(3)         <--------P                      <---------RAP2.3(2)        <---------MYB52(1)                      <---------ATERF1(2)       --------->LBD16                      <---------DEAR3(1)      <---------LBD16                     --------->SPL7          ------>ZmHOX2a(1)                     --------->ATERF1(1)<---------At4g35610                     <---------ABI4(1)  --------->GLK1(1)                  ===========================HOX2a_HOX2a                  ==================================HOX2a_HOX2a                        <---------ANAC58                  ------>ZmHOX2a(2)     --------->At4g35610                            <---------ANAC58                 ============================HOX2a_HOX2a          -------->P        <---------WOX13(1)                 <------ZmHOX2a(2)      <---------GLK1(1)     ------>MYB46(1)      >>>>>>>>>ARR2                 ===================================HOX2a_HOX2a  <-----------GT1   <------------CBF                <---------ARR14(2)     ----------->ARR10      ------>MYB83        --------->ATHB12              <---------HSFB2a(1)      <-----------ARR10     --------->WOX13(1)  <---------YAB1             <---------KAN4(2)        <------ZmHOX2a(1) <---------ETT(2)       <----------DOF2   tattcaactagggagaacgatcgggcggcgataaaatggaggagctcctccggtaaggtagaccaatctaccattttgctactttgattgtttgtgattt  24456900                       <---------ANAC46                       <---------ANAC55(2)              <-----------TBP              --------->AHL20(2)              <---------AHL20(2)                                                              -------            --------->AHL20(2)       ---------->DOF2                               ---------->DOF2            ----------->TBP       --------->TOE1(3)                            <----------DOF2<------           <---------AHL20(1)     --------->TOE2(3)  <---------TOE1(3)        <---------------AGL15           --------->AHL20(1)     <---------MYB59    <---------TOE2(3)        --------------->AGL15        --------->AHL20(2)      -------->P <---------MYB59                  <-----------GT1   -------     <---------ANAC55(2)  --------->ARR14(2)         --------->MYB59       <-----------GT1    <------     --------->ANAC55(2)  <---------ARR14(2)------>ZmHOX2a(1)        <---------ANAC46    ------------   gtgagtcacataatatatatatactacgtatacttacctaaaagtcctaacattttaggttccaaatggttgtgtttttaacttttaaagaaacaataaa  24457000  <---------AHL20(2) --------->AHL20(2) -->AHL20(1) ---AHL20(2)     <---------ICU4                  <---------MYB59                         <---------AHL20(2) -->AHL20(2)    <---------ATHB12                 --------->TOE2(3)                      --------->AHL20(2) ---AHL20(1) <-----------GT1              <------------CBF                            --------->YAB1 >CBF --------->YAB1          --------->YAB1   ------->TEIL                    ---------->DOF2   atataaaatcaaaattcactcattcccataaataagaatgaatacattgaacctaaatgaaaaatatgagttctaatttgctaaagaatattaattcata  24457100                      --------->ATHB12                      <---------ICU4                     --------->ICU4                     <---------ATHB12                     <---------YAB1       <---------MYB46(3)   --------------->AtSPL3                    <---------TOE2(3) <---------ICU4     <---------AHL20(2)                   --------->YAB1     --------->ATHB12  <---------AHL20(2)                       ----                 <---------YAB1      <---------YAB1     --------->AHL20(2)                       <---            <-----------GT1       <-------TEIL          --------->AHL20(1) ----------->GT1-----------        --------->AHL20(2)  <---------AtLEC2    <------------CBF       ---------->DOF2   ------------   ttctattcgattttataccattaatgattttcatggttcatcatttgttgaattgaaatttaatagcagtacttaaagagtaaatactctctccatttgt  24457200       <---------AHL20(1)       --------->ARR11(3)       --------->AHL20(1)                                                             <---------YAB1     --------->AHL20(1)                                                             <---------ICU4     --------->ARR11(3)                                                             --------->YAB1     <---------ARR11(3)                                                            --------->ICU4     <---------AHL20(1)                                                         --------->AHL20(2)    --------->YAB1                                                              <---------AHL20(2) ----->ETT(2)                               <---------PCF5                     --------->AHL20(2) ------ETT(2)   --------->WRKY38(1)--------->AtMYB61                         <---------ARR11(3) ---->AGL15     --------->WRKY12  --------->ANAC46                           --------->ARR11(3)     < ----->AGL3   <-------GAMYB     --------->REM1(1)       <---------ZAT6   ---------->DOF2          ---   agacaaaaatattttgggttgacttccctaaactacaccaaaacagggaccccaaatagtgtttgtacttaggcaaaaagatttaattatgtttcatagg  24457300        --------->ARR11(3)                  --------->AHL20(1)                          <-----------GT1        <---------AHL20(1)                 --------->AHL20(2)                     <---------AHL20(2)<     --------->AHL20(2)                --------->MYB46(3)                        <---------YAB1    <- ---------WOX13(1)            ---------->DOF2--------->CCA1(2)     <---------ATHB12 <---------TOE2(3) ------>ATHB12    --------->AHL20(2) ----------->RAV1(1)  --------->ANAC46     --------->YAB1      <-   tgattgattatatattctaaataaacaaaaacaaaagcccaacaaatatatgagactaagacacaacaaatcaaaaatgaataataaatgttacaaattt  24457400  Previous    Next  AGI:  At1g65740.1    Description:  F-box family protein. similar to F-box family protein [Arabidopsis thaliana] (TAIR:AT1G65760.1); similar to unknown [Populus trichocarpa] (GB:ABK93341.1); contains InterPro domain Protein of unknown function DUF295 (InterPro:IPR005174) Range:  from: 24455759    to: 24456874    Orientation: Reverse Links:  TAIR  MIPS      Please cite the corresponding publications when using AthaMap.
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