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Chromosome 1
Chromosome 2
Chromosome 3
Chromosome 4
Chromosome 5
Position
Exon region
Intron region
UTR region
AGI
% Restriction to highly conserved TF binding sites (0-100)
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1 10 20 30 40 50 60 70 80 90 100
<---------
MYB52(1)
--------->
ARR14(1)
--------->
ARR14(2)
<---------
ARR14(2)
<---------
ARR14(2)
--------->
ARR14(2)
<---------
GLK1(2)
------>
ZmHOX2a(1)
--------->
LBD16
<------
NtERF2
<---------
LBD16
<------
ZmHOX2a(2)
<---------
ARR14(2)
<---------
ANAC58
<---------
CCA1(2)
<---------
ARR11(3)
--------->
ARR14(2)
<---------
RAP2.6(2)
<---------
GLK1(2)
---------->
DOF2
---------
DOF2
--------->
MYB59
<---------
ANAC58
--------->
GLK1(2)
--------->
GLK1(1)
-
ZAT18
------>
ZmHOX2a(1)
<---------
ANAC46
<---------
GLK1(2)
----------->
GT1
--------->
ARR11(3)
>
ZAT18
<---------
LBD16
---------->
ID1
--------->
LBD16
------->
TEIL
--------->
At5g28300
<---
tctttggtatcctggattcggtagtcttcccttggcgtccttaagaaccgcataagattcttgaatctcggagacagtgaaatccaaaagatcaaggctc
24456500
<------
MYB83
<------
MYB46(1)
<---------
AtMYB61
<---------
MYB46(3)
--------->
LBD16
<---------
LBD16
--------->
ANAC58
<---------
HSFB2a(1)
--------->
ANAC55(2)
--------->
HSFC1(2)
<---------
ANAC55(2)
<------
ZmHOX2a(1)
<--------
P
<-----------
GT1
--------->
ANAC58
<---------
ANAC46
--------->
LBD16
--------->
ARR14(2)
--------->
ANAC46
--------->
ALFIN1
<---------
LBD16
<---------
ARR14(2)
--------->
ANAC55(1)
<-------
GAMYB
<---------
HSFC1(2)
<---------
ANAC46
-
--------->
CCA1(2)
--------->
TOE1(2)
--------->
HSFB2a(1)
--------->
ETT(1)
<------
------
LBD16
<---------
ANAC55(2)
<---------
GLK1(2)
<-----------
HVH21
<---------
MYB52(1)
tcggaagaaatacgcaatggaaaacgtgagagagggttgaggagatggaatctcccggagttggtgtccatgtcggatttgattatccagcccttactcg
24456600
<------
ZmHOX2a(1)
------->
MYC4
<-------
PIF4
------->
PIF5
--------->
At4g35610
<-------
MYC4
<---------
ZAT2
------->
MYC2
--------->
ZAT2
<-------
MYC2
<---------
At4g35610
------->
PIF4
<-----------
RAV1(2)
<-------
MYC3
<--------
P
------->
MYC3
==============================================
MYC_MYB
--------->
TGA1a
===============================================
MYC_MYB
<---------
TGA1a
--------->
LBD16
----------->
RAV1(2)
--------->
ANAC58
------>
NtERF2
============
--------->
ANAC46
--------->
DEAR3(1)
<---------
TGA1a
--------->
ANAC55(2)
<-------
GAMYB
--------->
TGA1a
--------->
O2
<------
NtERF2
============
============================
MYC_MYB
--------->
O2
--------->
ANAC58
<---------
ANAC46
<---------
O2
<---------
O2
--------->
ATERF1(1)
--------->
HSFC1(2)
--------->
ANAC58
<-------
PIF5
<---------
LBD16
<---------
HSFC1(2)
--------->
ANAC58
<-----------
HVH21
<------
NtERF2
<---------
HSFC1(1)
<------
ZmHOX2a(1)
<---------
ALFIN1
------>
NtERF2
--------->
HSFC1(1)
<------
ZmHOX2a(1)
<------
NtERF2
--------->
ANAC46
--------->
HSFB2a(2)
-----
-------->
ALFIN1
<---------
LBD16
==============================
MYC_MYB
<---------
HSFB2a(2)
<----
---
LBD16
<---------
ANAC46
------->
TEIL
<---------
ABI4(2)
------>
ZmHOX2a(1)
--------->
ALFIN1
gagaggaggagagagtgactcggaagaaggctgcacgtgagaggaacgcgccggggttgcagctgaagacatggtcctctagaagggtctcacttggggc
24456700
--------->
LBD16
--------->
DEAR3(1)
<---------
ANAC46
<------
NtERF2
<---------
LBD16
------>
NtERF2
<---------
GLK1(2)
----------->
HVH21
--------->
WOX13(1)
<------
ZmHOX2a(1)
<------
NtERF2
<--------
P
<---------
DEAR3(1)
--------->
ANAC46
<-------
GAMYB
--------->
ZAT18
<---------
ARR14(2)
--------->
CCA1(2)
<---------
ANAC46
--------->
ATERF1(1)
--------->
ANAC58
<---------
YAB1
============
MYC_MYB
<---------
ZAT18
--------->
ARR14(2)
<---------
ANAC58
<---------
At4g35610
==========
MYC_MYB
<---------
ATERF1(1)
--------->
ANAC58
--------->
ZAT18
--------->
At4g35610
------>
HVH21
<---------
DEAR3(1)
<---------
REM1(2)
<---------
ANAC58
<---------
GLK1(2)
-----
DEAR3(1)
<---------
RAP2.3(3)
<<<<<<<<<
TBF1
<------
ZmHOX2a(1)
<---------
At4g35610
gatggggttgaagtcaatgagagggcgcctatggaaaggattcttcttcacgccggagacagaggagtgccatgatacacagatgctgctgaaacgcttg
24456800
--------->
AHL20(2)
--------->
RAP2.3(1)
<------
NtERF2
<---------
RAP2.3(1)
<---------
ATERF1(1)
<---------
ORA47(2)
------>
NtERF2
<---------
DEAR4(2)
<---------
TOE2(3)
<---------
ERF1
--------->
MYB59
--------->
ATERF1(2)
--------->
DAG2
<---------
RAP2.3(3)
<--------
P
<---------
RAP2.3(2)
<---------
MYB52(1)
<---------
ATERF1(2)
--------->
LBD16
<---------
DEAR3(1)
<---------
LBD16
--------->
SPL7
------>
ZmHOX2a(1)
--------->
ATERF1(1)
<---------
At4g35610
<---------
ABI4(1)
--------->
GLK1(1)
===========================
HOX2a_HOX2a
==================================
HOX2a_HOX2a
<---------
ANAC58
------>
ZmHOX2a(2)
--------->
At4g35610
<---------
ANAC58
============================
HOX2a_HOX2a
-------->
P
<---------
WOX13(1)
<------
ZmHOX2a(2)
<---------
GLK1(1)
------>
MYB46(1)
>>>>>>>>>
ARR2
===================================
HOX2a_HOX2a
<-----------
GT1
<------------
CBF
<---------
ARR14(2)
----------->
ARR10
------>
MYB83
--------->
ATHB12
<---------
HSFB2a(1)
<-----------
ARR10
--------->
WOX13(1)
<---------
YAB1
<---------
KAN4(2)
<------
ZmHOX2a(1)
<---------
ETT(2)
<----------
DOF2
tattcaactagggagaacgatcgggcggcgataaaatggaggagctcctccggtaaggtagaccaatctaccat
tttgctactttgattgtttgtgattt
24456900
<---------
ANAC46
<---------
ANAC55(2)
<-----------
TBP
--------->
AHL20(2)
<---------
AHL20(2)
-------
--------->
AHL20(2)
---------->
DOF2
---------->
DOF2
----------->
TBP
--------->
TOE1(3)
<----------
DOF2
<------
<---------
AHL20(1)
--------->
TOE2(3)
<---------
TOE1(3)
<---------------
AGL15
--------->
AHL20(1)
<---------
MYB59
<---------
TOE2(3)
--------------->
AGL15
--------->
AHL20(2)
-------->
P
<---------
MYB59
<-----------
GT1
-------
<---------
ANAC55(2)
--------->
ARR14(2)
--------->
MYB59
<-----------
GT1
<------
--------->
ANAC55(2)
<---------
ARR14(2)
------>
ZmHOX2a(1)
<---------
ANAC46
------------
gtgagtcacataatatatatatactacgtatacttacctaaaagtcctaacattttaggttccaaatggttgtgtttttaacttttaaagaaacaataaa
24457000
<---------
AHL20(2)
--------->
AHL20(2)
-->
AHL20(1)
---
AHL20(2)
<---------
ICU4
<---------
MYB59
<---------
AHL20(2)
-->
AHL20(2)
<---------
ATHB12
--------->
TOE2(3)
--------->
AHL20(2)
---
AHL20(1)
<-----------
GT1
<------------
CBF
--------->
YAB1
>
CBF
--------->
YAB1
--------->
YAB1
------->
TEIL
---------->
DOF2
atataaaatcaaaattcactcattcccataaataagaatgaatacattgaacctaaatgaaaaatatgagttctaatttgctaaagaatattaattcata
24457100
--------->
ATHB12
<---------
ICU4
--------->
ICU4
<---------
ATHB12
<---------
YAB1
<---------
MYB46(3)
--------------->
AtSPL3
<---------
TOE2(3)
<---------
ICU4
<---------
AHL20(2)
--------->
YAB1
--------->
ATHB12
<---------
AHL20(2)
----
<---------
YAB1
<---------
YAB1
--------->
AHL20(2)
<---
<-----------
GT1
<-------
TEIL
--------->
AHL20(1)
----------->
GT1
-----------
--------->
AHL20(2)
<---------
AtLEC2
<------------
CBF
---------->
DOF2
------------
ttctattcgattttataccattaatgattttcatggttcatcatttgttgaattgaaatttaatagcagtacttaaagagtaaatactctctccatttgt
24457200
<---------
AHL20(1)
--------->
ARR11(3)
--------->
AHL20(1)
<---------
YAB1
--------->
AHL20(1)
<---------
ICU4
--------->
ARR11(3)
--------->
YAB1
<---------
ARR11(3)
--------->
ICU4
<---------
AHL20(1)
--------->
AHL20(2)
--------->
YAB1
<---------
AHL20(2)
----->
ETT(2)
<---------
PCF5
--------->
AHL20(2)
------
ETT(2)
--------->
WRKY38(1)
--------->
AtMYB61
<---------
ARR11(3)
---->
AGL15
--------->
WRKY12
--------->
ANAC46
--------->
ARR11(3)
<
----->
AGL3
<-------
GAMYB
--------->
REM1(1)
<---------
ZAT6
---------->
DOF2
---
agacaaaaatattttgggttgacttccctaaactacaccaaaacagggaccccaaatagtgtttgtacttaggcaaaaagatttaattatgtttcatagg
24457300
--------->
ARR11(3)
--------->
AHL20(1)
<-----------
GT1
<---------
AHL20(1)
--------->
AHL20(2)
<---------
AHL20(2)
<
--------->
AHL20(2)
--------->
MYB46(3)
<---------
YAB1
<-
---------
WOX13(1)
---------->
DOF2
--------->
CCA1(2)
<---------
ATHB12
<---------
TOE2(3)
------>
ATHB12
--------->
AHL20(2)
----------->
RAV1(1)
--------->
ANAC46
--------->
YAB1
<-
tgattgattatatattctaaataaacaaaaacaaaagcccaacaaatatatgagactaagacacaacaaatcaaaaatgaataataaatgttacaaattt
24457400
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AGI:
At1g65740.1
Description:
F-box family protein. similar to F-box family protein [Arabidopsis thaliana] (TAIR:AT1G65760.1); similar to unknown [Populus trichocarpa] (GB:ABK93341.1); contains InterPro domain Protein of unknown function DUF295 (InterPro:IPR005174)
Range:
from: 24455759
to: 24456874
Orientation: Reverse
Links:
TAIR
MIPS
Please cite the corresponding
publications
when using AthaMap.