Home Tools   - Search   - Colocalization   - Gene Analysis   - Gene Identification   - Small RNA Targets   - MicroRNA Targets Description Documentation Citations Downloads Publications History Contact Links Disclaimer	Search   Chromosome 1 Chromosome 2 Chromosome 3 Chromosome 4 Chromosome 5    Position Exon region Intron region UTR region AGI % Restriction to highly conserved TF binding sites (0-100)   Go to graphical and table display  1        10        20        30        40        50        60        70        80        90        100                                                                                                      -          <---------YAB1                                                         --------->GLK1(2)  <    <---------ZAT18                                                              <-----------ARR10  <    <---------ZAT14                   --------->MYB52(1)                        <---------GLK1(2) ---    --------->ZAT18                  <---------WRKY38(1)               ------->GAMYB            <----    --------->ZAT14                  <---------WRKY12                --------->At4g35610   --------->ANAC58 --------DOF2            <-----------HVH21                       --------->AtMYB61         --------->ANAC58   cttttgtgcagtatcattccgataaactgtcagcattggacaacggatagaacacaaatggaatggaccacaactgaagaccgattctaagcctagcaac  20118300                                                                                                -----                                                                                               <-----                                                                                       --------->ANAC46                                                                                       --------->ANAC55(2)                                                                                       --------->ANAC58                                                                                       <---------ANAC55(2)                                                                                       ==============                                                                                       --------->ANAC55(1)                                                                                       <---------TGA1a                                                                                       --------->bZIP60(1) --------->ATHB51                                                                      <---------bZIP60(1) <---------ICU4                                                                        --------->bZIP60(2) --------->AHL20(2)                                                                    --------->TGA1a <---------AHL20(2) --------->AHL20(1)                                                 <---------O2 <--------ATHB1     <---------AHL20(1)                                                 ============== -------->ICU4      <---------AHL20(2)             <-----------GT1          --------->YAB1     ------ ---------ATHB12   --------->AHL20(2)        <---------AHL20(1)   ------->TEIL         ----------->GT1 ---------ATHB51   --------->YAB1            --------->AHL20(1)  <---------GLK1(2)     --------->ANAC58 ------>YAB1      <---------YAB1             <---------ARR11(3)  <---------CCA1(2)     --------->O2 -----MYB52(2)--------->TOE2(3)        <-----------GT1           <---------ARR14(1)  <-----------GT1   taataatttgaagttatcttattatattgtatgaacagttttttcaatattttttgctctattaatcgaatctcacaatcacattagtcacgttacaacg  20118400        ----------->GT1 <------ZmHOX2a(1)                                                       <---- -->GAMYB            --------->DAG2                                                            <----- ----MYB52(2)       ---------->DOF2                                                           <------ ===MYC_MYB  --------->MYB46(3)                                                          <---------MYB52(1) ==============================bZIP_DOF                                        <---------ARR11(3) --->MYB46(3)<---------MYB52(2)    <---------AHL20(2)     --------->AtMYB61--------->REM1(1)<--------   accagacatgtagtaacaaacaaaaaggaccatacatttttttttgtttaacaaaaacgaccatacatgttatcgctacatgattttctctgttattttt  20118500                                             <---------AHL20(2)                                            --------->AHL20(1)                                            <---------AHL20(1)                                           <---------AHL20(2)                                         <---------AHL20(2)                                         <-----------TBP                              --------->ARR11(3)                                                    -    ------->TEIL              --------->ARR14(3)                                                <----   <---------CCA1(2)          <---------ARR11(3)                                            --------- -----AHL20(2)       --------->ALFIN1    --------->AHL20(2)                      <---------------AGL15 ----YAB1           ------->MYC3       ----------->TBP      --------->ANAC46     --------------->AGL15 ---AHL20(2)        <-------MYC3   <---------ANAC46         --------->ANAC58  --------------->AGL15 - -YAB1     <------------CBF   <---------ARR14(3)            --------->ANAC58  <---------------AGL15 <   attttgtatctcacattgaacatgtggacgaagaccttcgtatatatatattttctaatgacacaccaaaaactgaattactactactagtagaaagtat  20118600                                                                                     --------->SPL7                                                                                    --------->MYB52(1)                                                                                    ------>MYB46(1)                                                                                  ------->GAMYB                                                                                --------->MYB52(1)                                                                               ------->GAMYB                                                                              <---------MYB55(2)                                                                              <---------MYB111(2)                                                                              <---------MYB52(2)                                                                              --------->MYB46(3) ---------->TBP                                                      <---------AHL20(1) -------TBP                                          <---------ICU4  --------->ARR11(3)           --- -->GT1                    --------->WOX13(1)       ------------>CBF --------->AHL20(1)           --- -------->AHL20(2)       <---------YAB1         --------->AHL20(2)  <-----------TBP ------>MYB83<---- ---------AHL20(2)  <-----------GT1     --------->YAB1              --------->AHL20(2)       <------ZmHOX2a(1)   atataaatgcgaagaagacatataactatcattcagagccaaacataaaaaaaaatcaatacatatgcaaatatatagcaacaaccgaacgatgaggacc  20118700                                                                 ------>ZmHOX2a(1)                                                               <---------ANAC58                                                             <---------ARR14(2)                       --------->LBD16                       --------->ARR14(2)                       ------>NtERF2                      <---------ANAC58                 --------->ANAC58      --------->ANAC55(2)                           <<<<<<<GRF7<---------ANAC58            --------->ANAC58    <-----------GT1   <---------DEAR3(1)          ------>ZmHOX2a(1)          <---------ANAC46 --->MYB46(1)        <---------LBD16              ----------->HVH21          <---------ANAC58 --->MYB83      <---------GLK1(1)               <---------ICU4 <---------ANAC46--------->ALFIN1 -----MYB59     --------->GLK1(1)           <-------TEIL  <---------ANAC58   <---------ANAC58       -   aaattttcacttaatctgatttctccggcgaagaacatggtgaagattcatcctgacaaggcgtttcctgtggattttagcgtgggagaaggcaagactt  20118800                                                                     <---------ZAT14                                                        --------->YAB1<---------ALFIN1                                             ------>ZmHOX2a(2)       --------->At4g35610                                            <------ZmHOX2a(2)        <---------At4g35610           <---------LBD16                  --------->GLK1(1)        --------->ZAT14       --------->MYB52(1)                   <---------GLK1(1)        <------NtERF2 <---------SPL7  ---------->DOF2           --------->ARR11(3)        --------->ZAT18  ---------->DOF2 -------->DEAR3(1)          <-----------GT1<---------ARR11(3) ---------->DOF2  <---------YAB1 -------   cgccgtacttaacgacggagaaagagagtttcacgatttggatgagatctcttgtgtttcatagtaaaggctgcacagtttttgattccaaaggaaactt  20118900                                                                                   --------->TOE2(3)                                                                                   --------------->AGL15                                                                                   <---------------AGL15                                                                                  <---------ANAC55(2)                                                                   --------->ARR14(3)                                                                   <---------ARR14(3)                                                                   <---------ARR11(3)                  <---------YAB1                             ----------->GT1      --------->ANAC55(2)                --------->YAB1                              --------->ANAC58      <---------bZIP60(1)                <---------ICU4                <---------DAG2--------->ANAC58      <---------ANAC46               --------->ICU4                 --------->TOE2(3)    --------->GLK1(2)         ----------->GT1                   <-----------GT1  --------->ANAC46      <----------ID1    -      <---------ANAC46               <---------ZAT14       <---------LBD16 <-----------GT1----------- -->TOE2(3)    <---------YAB1  <---------REM1(1)     ------->TEIL  --------->ARR11(3)    --------->DAG2   aatctatcgagtggataattataactccaagagttgtagtgaagtttaccttatggacttatacggcaaaatcttgtttacattacgtcaaaaggtaaac  20119000                                                                                                    x                                                                                                    <                                                                        <---------HSFB2a(2) ---------                                                                        --------->HSFB2a(2) <--------                                                                <---------ANAC58           <---------CCA1(2)                                                                <---------ANAC58      <xxxxxxxxxxxxxx                               --------->TOE2(3)              <---------AHL20(2)     --------->KAN4(1) -------->AHL20(2)   <---------YAB1                      <---------AHL20(2)         <---------KAN4(2) >GT1          <---------TOE1(2)   ---------->DOF2     <----------DOF2xxxxxxxxxxxxxxxxx>smallRNA(si3)   aataaaacatatcatcttatgttcttatagttttcttaaaagtattttgttctaactcttttattttcttggttatagaaattgggattattcaaatctt  20119100                                                                                                    x                                                                                                    x                                                                                                    x                                                                                                    x                                                                                                   xx                                                                                                   xx                                                                                                   <x                                                                                                  <--                                                                                                  xxx                                                                                                  <--                                                                                                  xxx                                                                                                  <--                                                                                                  <--                                                                                                 xxxx                                                                                                 <xxx                                                                                                -----                                                                                               <xxxxx                                                                                               xxxxxx                                                                                              <xxxxxx                                                                                              xxxxxxx                                                                                              xxxxxxx                                                                                              <xxxxxx                                                                                             xxxxxxxx                 --------->LBD16                                                             xxxxxxxx                 xxxxxxxxxxxxxxxxxxxxxxx>smallRNA(fl3)                                      xxxxxxxxx                ------->GAMYB                                                               xxxxxxxxx                <xxxxxxxxxxxxxxxxxxxxxxxsmallRNA(le3)                                       xxxxxxxxx        <-----------GT1                                                                     xxxxxxxxx       <xxxxxxxxxxxxxxxxxxxxxxsmallRNA(se3)                                                 xxxxxxxxx     <xxxxxxxxxxxxxxxxxxxxxxxsmallRNA(le3)                       <-------TEIL               <xxxxxxxx     --------->CCA1(2)                            <---------ARR11(3)                        xxxxxxxxx     <xxxxxxxxxxxxxxxxxxxxxxxsmallRNA(si3)        --------->ARR14(2)                        xxxxxxxxx   <------ZmHOX2a(1)     --------->ARR11(3)       <---------AHL20(1)                     xxxxxxxxxxxx   xxxxxxxxxxxxxxxxxxxxxx>smallRNA(se3)           <---------ARR14(2)                     xxxxxxxxxxxx  xxxxxxxxxxxxxxxxxxxxxxx>smallRNA(se3)           --------->AHL20(1)            xxxxxxxxxxxxxxxxxxxxx  ----------->GT1xxxxxxxxxxxxxxxxxxxxxxx>smallRNA(si3)    ---------->DOF2       xxxxxxxxxxxxxxxxxxxxx <xxxxxxxxxxxxxxxxxxxxxxsmallRNA(i2)              xxxxxxxxxxxxxxxxxxxxxx>smallRNA(se3)xxxxxxxxxxxxxxx xxxxxxxxxxxxxxxxxxxxxxxx>smallRNA(se3)           --------->ARR11(3)            ---------->DOF2<xxxxx xxxxxxxxxxxxxxxxxxxxxx>smallRNA(fl3)             <---------ARR14(3)       xxxxxxxxxxxxxxxxxxxxxxx>smallRNA(si3) xxxxxxxxxxxxxxxxxxxxxxxsmallRNA(si3)             --------->ARR14(3)      <---------YAB1 xxxxxxxxxxxx >ARR11(3)     <---------LBD16                   xxxxxxxxxxxxxxxxxxxxxx>smallRNA(se3) xxxxxxxxxxxxxxx -ARR14(2) xxxxxxxxxxxxxxxx>smallRNA(i)xxxxxxxxxxxxxxxxxxxxxxx>smallRNA(le3) xxxxxxxxxxxxxxxxxxxxxxx>smallRNA(fl3) xxxxxxxxxsmallRNA(i2)   <---------ARR11(3)    xxxxxxxxxxxxxxxxxxxxxx>smallRNA(si3)   xxxxxxxxxxxxxxx   ggaaaggatataactcaaccgggacaagatttcaactaagaaaaaacttcaagatattgccaaagggttcatcttcatcatacaaagttgtaatgggatc  20119200  Previous    Next  AGI:  At1g53880.1    Description:  GTP binding / translation initiation factor. similar to GTP binding / translation initiation factor [Arabidopsis thaliana] (TAIR:AT1G53900.1); similar to hypothetical protein [Vitis vinifera] (GB:CAN62132.1); contains InterPro domain Initiation factor 2B related; (InterPro:IPR000649); contains InterPro domain Protein of unknown function DUF567 (InterPro:IPR007612) Range:  from: 20118737    to: 20122153    Orientation: Forward Links:  TAIR  MIPS      Please cite the corresponding publications when using AthaMap.
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