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Chromosome 1
Chromosome 2
Chromosome 3
Chromosome 4
Chromosome 5
Position
Exon region
Intron region
UTR region
AGI
% Restriction to highly conserved TF binding sites (0-100)
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1 10 20 30 40 50 60 70 80 90 100
-
<---------
YAB1
--------->
GLK1(2)
<
<---------
ZAT18
<-----------
ARR10
<
<---------
ZAT14
--------->
MYB52(1)
<---------
GLK1(2)
---
--------->
ZAT18
<---------
WRKY38(1)
------->
GAMYB
<----
--------->
ZAT14
<---------
WRKY12
--------->
At4g35610
--------->
ANAC58
--------
DOF2
<-----------
HVH21
--------->
AtMYB61
--------->
ANAC58
cttttgtgcagtatcattccgataaactgtcagcattggacaacggatagaacacaaatggaatggaccacaactgaagaccgattctaagcctagcaac
20118300
-----
<-----
--------->
ANAC46
--------->
ANAC55(2)
--------->
ANAC58
<---------
ANAC55(2)
==============
--------->
ANAC55(1)
<---------
TGA1a
--------->
bZIP60(1)
--------->
ATHB51
<---------
bZIP60(1)
<---------
ICU4
--------->
bZIP60(2)
--------->
AHL20(2)
--------->
TGA1a
<---------
AHL20(2)
--------->
AHL20(1)
<---------
O2
<--------
ATHB1
<---------
AHL20(1)
==============
-------->
ICU4
<---------
AHL20(2)
<-----------
GT1
--------->
YAB1
------
---------
ATHB12
--------->
AHL20(2)
<---------
AHL20(1)
------->
TEIL
----------->
GT1
---------
ATHB51
--------->
YAB1
--------->
AHL20(1)
<---------
GLK1(2)
--------->
ANAC58
------>
YAB1
<---------
YAB1
<---------
ARR11(3)
<---------
CCA1(2)
--------->
O2
-----
MYB52(2)
--------->
TOE2(3)
<-----------
GT1
<---------
ARR14(1)
<-----------
GT1
taataatttgaagttatcttattatattgtatgaacagttttttcaatattttttgctctattaatcgaatctcacaatcacattagtcacgttacaacg
20118400
----------->
GT1
<------
ZmHOX2a(1)
<----
-->
GAMYB
--------->
DAG2
<-----
----
MYB52(2)
---------->
DOF2
<------
===
MYC_MYB
--------->
MYB46(3)
<---------
MYB52(1)
==============================
bZIP_DOF
<---------
ARR11(3)
--->
MYB46(3)
<---------
MYB52(2)
<---------
AHL20(2)
--------->
AtMYB61
--------->
REM1(1)
<--------
accagacatgtagtaacaaacaaaaaggaccatacatttttttttgtttaacaaaaacgaccatacatgttatcgctacatgattttctctgttattttt
20118500
<---------
AHL20(2)
--------->
AHL20(1)
<---------
AHL20(1)
<---------
AHL20(2)
<---------
AHL20(2)
<-----------
TBP
--------->
ARR11(3)
-
------->
TEIL
--------->
ARR14(3)
<----
<---------
CCA1(2)
<---------
ARR11(3)
---------
-----
AHL20(2)
--------->
ALFIN1
--------->
AHL20(2)
<---------------
AGL15
----
YAB1
------->
MYC3
----------->
TBP
--------->
ANAC46
--------------->
AGL15
---
AHL20(2)
<-------
MYC3
<---------
ANAC46
--------->
ANAC58
--------------->
AGL15
-
-
YAB1
<------------
CBF
<---------
ARR14(3)
--------->
ANAC58
<---------------
AGL15
<
attttgtatctcacattgaacatgtggacgaagaccttcgtatatatatattttctaatgacacaccaaaaactgaattactactactagtagaaagtat
20118600
--------->
SPL7
--------->
MYB52(1)
------>
MYB46(1)
------->
GAMYB
--------->
MYB52(1)
------->
GAMYB
<---------
MYB55(2)
<---------
MYB111(2)
<---------
MYB52(2)
--------->
MYB46(3)
---------->
TBP
<---------
AHL20(1)
-------
TBP
<---------
ICU4
--------->
ARR11(3)
---
-->
GT1
--------->
WOX13(1)
------------>
CBF
--------->
AHL20(1)
---
-------->
AHL20(2)
<---------
YAB1
--------->
AHL20(2)
<-----------
TBP
------>
MYB83
<----
---------
AHL20(2)
<-----------
GT1
--------->
YAB1
--------->
AHL20(2)
<------
ZmHOX2a(1)
atataaatgcgaagaagacatataactatcattcagagccaaacataaaaaaaaatcaatacatatgcaaatatatagcaacaaccgaacgatgaggacc
20118700
------>
ZmHOX2a(1)
<---------
ANAC58
<---------
ARR14(2)
--------->
LBD16
--------->
ARR14(2)
------>
NtERF2
<---------
ANAC58
--------->
ANAC58
--------->
ANAC55(2)
<<<<<<<
GRF7
<---------
ANAC58
--------->
ANAC58
<-----------
GT1
<---------
DEAR3(1)
------>
ZmHOX2a(1)
<---------
ANAC46
--->
MYB46(1)
<---------
LBD16
----------->
HVH21
<---------
ANAC58
--->
MYB83
<---------
GLK1(1)
<---------
ICU4
<---------
ANAC46
--------->
ALFIN1
-----
MYB59
--------->
GLK1(1)
<-------
TEIL
<---------
ANAC58
<---------
ANAC58
-
aaattttcacttaatctgatttctccggcgaagaac
atggtgaagattcatcctgacaaggcgtttcctgtggattttagcgtgggagaaggcaagactt
20118800
<---------
ZAT14
--------->
YAB1
<---------
ALFIN1
------>
ZmHOX2a(2)
--------->
At4g35610
<------
ZmHOX2a(2)
<---------
At4g35610
<---------
LBD16
--------->
GLK1(1)
--------->
ZAT14
--------->
MYB52(1)
<---------
GLK1(1)
<------
NtERF2
<---------
SPL7
---------->
DOF2
--------->
ARR11(3)
--------->
ZAT18
---------->
DOF2
-------->
DEAR3(1)
<-----------
GT1
<---------
ARR11(3)
---------->
DOF2
<---------
YAB1
-------
cgccgtacttaacgacggagaaagagagtttcacgatttggatgagatctcttgtgtttcatagtaaaggctgcacagtttttgattccaaaggaaactt
20118900
--------->
TOE2(3)
--------------->
AGL15
<---------------
AGL15
<---------
ANAC55(2)
--------->
ARR14(3)
<---------
ARR14(3)
<---------
ARR11(3)
<---------
YAB1
----------->
GT1
--------->
ANAC55(2)
--------->
YAB1
--------->
ANAC58
<---------
bZIP60(1)
<---------
ICU4
<---------
DAG2
--------->
ANAC58
<---------
ANAC46
--------->
ICU4
--------->
TOE2(3)
--------->
GLK1(2)
----------->
GT1
<-----------
GT1
--------->
ANAC46
<----------
ID1
-
<---------
ANAC46
<---------
ZAT14
<---------
LBD16
<-----------
GT1
-----------
-->
TOE2(3)
<---------
YAB1
<---------
REM1(1)
------->
TEIL
--------->
ARR11(3)
--------->
DAG2
aatctatcgagtggataattataactccaagagttgtagtgaagtttaccttatggacttatacggcaaaatcttgtttacattacgtcaaaag
gtaaac
20119000
x
<
<---------
HSFB2a(2)
---------
--------->
HSFB2a(2)
<--------
<---------
ANAC58
<---------
CCA1(2)
<---------
ANAC58
<xxxxxxxxxxxxxx
--------->
TOE2(3)
<---------
AHL20(2)
--------->
KAN4(1)
-------->
AHL20(2)
<---------
YAB1
<---------
AHL20(2)
<---------
KAN4(2)
>
GT1
<---------
TOE1(2)
---------->
DOF2
<----------
DOF2
xxxxxxxxxxxxxxxxx>
smallRNA(si3)
aataaaacatatcatcttatgttcttatagttttcttaaaagtattttgttctaactcttttattttcttggttatag
aaattgggattattcaaatctt
20119100
x
x
x
x
xx
xx
<x
<--
xxx
<--
xxx
<--
<--
xxxx
<xxx
-----
<xxxxx
xxxxxx
<xxxxxx
xxxxxxx
xxxxxxx
<xxxxxx
xxxxxxxx
--------->
LBD16
xxxxxxxx
xxxxxxxxxxxxxxxxxxxxxxx>
smallRNA(fl3)
xxxxxxxxx
------->
GAMYB
xxxxxxxxx
<xxxxxxxxxxxxxxxxxxxxxxx
smallRNA(le3)
xxxxxxxxx
<-----------
GT1
xxxxxxxxx
<xxxxxxxxxxxxxxxxxxxxxx
smallRNA(se3)
xxxxxxxxx
<xxxxxxxxxxxxxxxxxxxxxxx
smallRNA(le3)
<-------
TEIL
<xxxxxxxx
--------->
CCA1(2)
<---------
ARR11(3)
xxxxxxxxx
<xxxxxxxxxxxxxxxxxxxxxxx
smallRNA(si3)
--------->
ARR14(2)
xxxxxxxxx
<------
ZmHOX2a(1)
--------->
ARR11(3)
<---------
AHL20(1)
xxxxxxxxxxxx
xxxxxxxxxxxxxxxxxxxxxx>
smallRNA(se3)
<---------
ARR14(2)
xxxxxxxxxxxx
xxxxxxxxxxxxxxxxxxxxxxx>
smallRNA(se3)
--------->
AHL20(1)
xxxxxxxxxxxxxxxxxxxxx
----------->
GT1
xxxxxxxxxxxxxxxxxxxxxxx>
smallRNA(si3)
---------->
DOF2
xxxxxxxxxxxxxxxxxxxxx
<xxxxxxxxxxxxxxxxxxxxxx
smallRNA(i2)
xxxxxxxxxxxxxxxxxxxxxx>
smallRNA(se3)
xxxxxxxxxxxxxxx
xxxxxxxxxxxxxxxxxxxxxxxx>
smallRNA(se3)
--------->
ARR11(3)
---------->
DOF2
<xxxxx
xxxxxxxxxxxxxxxxxxxxxx>
smallRNA(fl3)
<---------
ARR14(3)
xxxxxxxxxxxxxxxxxxxxxxx>
smallRNA(si3)
xxxxxxxxxxxxxxxxxxxxxxx
smallRNA(si3)
--------->
ARR14(3)
<---------
YAB1
xxxxxxxxxxxx
>
ARR11(3)
<---------
LBD16
xxxxxxxxxxxxxxxxxxxxxx>
smallRNA(se3)
xxxxxxxxxxxxxxx
-
ARR14(2)
xxxxxxxxxxxxxxxx>
smallRNA(i)
xxxxxxxxxxxxxxxxxxxxxxx>
smallRNA(le3)
xxxxxxxxxxxxxxxxxxxxxxx>
smallRNA(fl3)
xxxxxxxxx
smallRNA(i2)
<---------
ARR11(3)
xxxxxxxxxxxxxxxxxxxxxx>
smallRNA(si3)
xxxxxxxxxxxxxxx
ggaaaggatataactcaaccgggacaagatttcaactaagaaaaaacttcaagatattgccaaagggttcatcttcatcatacaaagttgtaatgggatc
20119200
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AGI:
At1g53880.1
Description:
GTP binding / translation initiation factor. similar to GTP binding / translation initiation factor [Arabidopsis thaliana] (TAIR:AT1G53900.1); similar to hypothetical protein [Vitis vinifera] (GB:CAN62132.1); contains InterPro domain Initiation factor 2B related; (InterPro:IPR000649); contains InterPro domain Protein of unknown function DUF567 (InterPro:IPR007612)
Range:
from: 20118737
to: 20122153
Orientation: Forward
Links:
TAIR
MIPS
Please cite the corresponding
publications
when using AthaMap.