Home Tools   - Search   - Colocalization   - Gene Analysis   - Gene Identification   - Small RNA Targets   - MicroRNA Targets Description Documentation Citations Downloads Publications History Contact Links Disclaimer	Search   Chromosome 1 Chromosome 2 Chromosome 3 Chromosome 4 Chromosome 5    Position Exon region Intron region UTR region AGI % Restriction to highly conserved TF binding sites (0-100)   Go to graphical and table display  1        10        20        30        40        50        60        70        80        90        100                                                  --------->ANAC58                                                --------->ANAC46                                    --------->YAB1             --------->ARR14(2)                    <---------GLK1(1)      --------->ANAC58    <---------ARR11(3)                   --------->ARR11(3)      --------->ANAC46    --------->ARR11(3)                   <---------ARR11(3)      --------->ANAC58    <---------ARR14(2)            <---------ARR11(3)      --------->AHL20(2)         --------->AHL20(1)            --------->ARR11(3)      <---------AHL20(2)         --------->ARR14(3)              <-----     --------->ARR11(3)         --------->AHL20(2)             <---------AHL20(1)              ------     <---------ARR11(3)         <---------AHL20(2)             <---------ARR14(3)      <---------TOE2(3)    <------ZmHOX2a(1)         --------->YAB1    --------->ANAC58           <---------HSFB2a(2)<------ZmHOX2a(1)   aggttaggatattagatattagatatcacgaatattaattaaaacactccacgacttcaaaacaagatattgttgtttgagaagttgcaaaggttaggat  19728800                                                                              ---------->ID1                                                                            <-----------RAV1(1)    <-                                                                         <----------DOF2           <-                      --------->ANAC46         <---------YAB1         ------->TEIL             <-----           <---------AHL20(2)                ----------->GT1          --------->ARR14(2)       <-----           --------->AHL20(2)            --------->ARR11(3)           <---------ARR11(1)       <-----         --------->TOE2(3)  ------>NtERF2--------->AHL20(1)           <---------ARR14(2)    <--------  --------->YAB1      <<<<<<<<<TAC1      <---------AHL20(2)          <---------ARR14(1)  ------------ <---------YAB1--------->AHL20(2)        --------->AHL20(2)          <---------CCA1(2)   <----------- ----ARR11(3)  --------->YAB1            <---------AHL20(1)        --------->ANAC55(2)  <------------ --->ARR11(3)  <---------AHL20(2)        <---------ARR11(3)        <---------ANAC55(2) ------------>CBF   attatcacaaatattaattaaaacactcgacgactcaaaacaatatattgttatttgagaaaatgcaaaacgtatcttttgttgttttgaacaatttatg  19728900                               <---------ICU4                               <---------AHL20(2)                               --------->AHL20(2)                               <--------HAHB4                               -------->ATHB1                          ------------>CBF      <---------CCA1(2)  --------->ANAC58      --------->GLK1(1)  --------->ANAC58  --------->ANAC46      <-------TEIL  --------->ANAC58  <-------TEIL  --------->ANAC58 --------->CCA1(2) --------WRKY38(1) --------->ARR14(1) --------WRKY12   <---------ARR14(2) ----TOE1(3)      --------->ARR11(1) ----TOE2(3)      --------->ARR14(2)          --------->ARR11(3) ----YAB1       ----------->ARR10             <---------ARR11(3) -AHL20(2)    ---------->DOF2  --------->ATHB51      ------>ZmHOX2a(1)      <-----------GT1 --->AGL15 --------->ANAC58   <---------ATHB12<---------ARR14(2)  <xxxxxxxxxxxxxxxxxxxxxxxsmallRNA(se3) ----AGL15 --------->ANAC46   --------->ICU4 <---------CCA1(2)  --------->YAB1   <xxxxxxxxxxxxxxxxxxx -----AGL3 --------->ANAC58   <---------ATHB51--------->ARR14(2)--------->AHL20(2)  <xxxxxxxxxxxxxxxx   gtaaacgcatttctcgcaaagatacgttcgcaattatttctcttggtatatcttcctcttaacaaataatattccatataacaaatcgaaacacacttat  19729000                                                            <---------YAB1                                                            ----------->TBP         ------>ZmHOX2a(2)      <xxxxxxxxxxxxxxxxxxxxxxsmallRNA(le3)        --------->GLK1(1)       xxxxxxxxxxxxxxxxxxxxxxx>smallRNA(si3)        <------ZmHOX2a(2)   ------>ZmHOX2a(2)             --------->YAB1                     --------       --------->ARR14(3)  <------ZmHOX2a(2)             <---------YAB1                      <-------       <---------AGP1      --------->GLK1(1)          --------->ICU4                    --------->ANAC58       <---------ARR14(3) <---------ARR14(2)       <---------ALFIN1                     --------->ANAC58       <---------ARR14(2) --------->ARR14(2)    --------->ANAC46                        --------->ANAC46       --------->ARR14(2) --------->ARR14(3)   <---------MYB55(2)                  --------->TOE1(3)       <---------ARR11(3) <---------ARR11(3)   --------->MYB46(3)                <---------ARR11(3)       --------->ARR11(3) --------->ARR11(3)  --------->ANAC46  <---------AHL20(2) --------->TOE2(3) xxxxsmallRNA(s2)         <---------AGP1xxxxxxxxxxxxxxxxxx>smallRNA(se3)     <------ZmHOX2a(1) xxxxxxxsmallRNA(fl3)     <---------ARR14(3)  <xxxxxxxxxxxxxxxxxxxxxsmallRNA(i2) --------->ARR11(3) -   caaatcgaagatctctatctaaatcgaagatctctatctatctaatccacccagcacttattataaataaacgtgagtaggaataccttcacgatatcaa  19729100                                                                       <---------At4g35610                                                                   --------->ANAC46                                                                  <---------REM1(2)                     <---------ICU4        --------->YAB1        --------->AtLEC2       <xxxxxxxxxxxx ---->CBF           --------->AHL20(2)   ------>MYB46(1)    <---------ARR14(2)         <-----------GT1 --YAB1  --------->YAB1                  ------>MYB83  ----------->GT1 --------->At4g35610 ------>TEIL   ------------>CBF     <xxxxxxxxxxxxxxxxxxxxxxxsmallRNA(i2)    --------->YAB1  xxxxxxxxx   tgtgccttctctcataaaccaattcattactcactgcaaaaccaaacaaaatggatgaagtgaatccatacacagctatcaaaaacttgaaaccgttcaa  19729200                                          <---------YAB1                                        <--------HAHB4                                        --------->YAB1                                        -------->ATHB1                                        <---------ICU4                                       <---------ATHB12  <---------HSFB2a(2)                      ---                                       --------->ICU4    --------->HSFB2a(2)      <---------At4g35610                xxxxxxxxxxxxxxxxxxxxxxx>smallRNA(se3)  <xxxxxxxxxxxxxxxxsmallRNA(i)  <---------At4g35610               ----------->GT1   --------->LBD16      --------->ARR14(2)          --------->At4g35610          <xxxxxxxxxxxxxxxxxxxxsmallRNA(si3)   xxxxxxxxxxxxxxxxxxxxxxx>smallRNA(si3) --------->At4g35610       <---------ANAC46         <---------ANAC58      --------->GLK1(2)      <---------YAB1<------ZmHOX2a(1) xxxxxxxxxxsmallRNA(si3)        <---------ANAC58      <---------ARR14(2)   xxxxxxxxxxxxxxxxxxxxxxx>smallRNA(i2) xxxxxxxxxxxxxx>smallRNA(i2)    <---------ANAC46    --------->HSFB2a(1)   --------->ICU4 <---------TOE2(3)   aacctcttggtgtattcaagttaaaattcttcatgcgtggaatcattataccaaaggttctgggatgtcttatgaaatgatgttagcagatgaggatgta  19729300                                                                                                 <---                                                                                                <----                                           --------->AHL20(2)                                   -----                                  <---------MYB46(3)                                            -----                            --------->YAB1 <---------AHL20(2)                                   <----           <-----------GT1  --------->TOE2(3)         <-----------GT1                    --------->LBD16         <----------DOF2    --------->TOE1(3)        <-----------GT1--------->ANAC55(2) <---------LBD16 ------>ICU4             --------->YAB1  <----------DOF2--------->ZAT6                 <---------LBD16   agtattttagactttacaatttgtctataatcttaatggttgtctttaattgtttttaactctcgcattcacgttttcttatgctattttcagggaaata  19729400             --------->AHL20(2)                                       --------->YAB1         <------ZmHOX2a(1)                                           <---------ATHB12    --------->ANAC46                                           --------->ZAT14                    ---  ---------->DOF2                                         --------->ZAT18                         <-- ------AHL20(2)                      <---------ZAT14     <------ZmHOX2a(1)                        --- -----AHL20(2)          --------->ARR11(3)               <<<<<<<<<<<<<<<<<LFY                    <--- ---->AHL20(2)          <---------ARR11(3)            --------->CCA1(2)        <---------KAN4(2)<---- ---->AHL20(1)          <-----------ARR10          <---------YAB1  --------->WOX13(1)           <---- -----AHL20(1)  ---------->DOF2      --------->ZAT14 <---------ARR14(2)      <------ZmHOX2a(1)  <----   aaattcaagcaggaataaaaaaggaacatctactcaaactacagaggtatgtgaagataggacactggacaatcatcgaggaattttcagtgactaaggc  19729500 <------NtERF2                                                                                   ---- ------>ATERF1(1)                                                                             <------ ----NtERF2--------->WOX13(1)                  --------->GLK1(1)        ----------->RAV1(1)   <------ ------>ALFIN1                          --------->ARR11(3)              ------>NtERF2         <------ --------HVH21                         --------->RVE1(1)            --------->ANAC46     --------->CCA1(2) -----ANAC58                --------->AtLEC2--------->LBD16         --------->ANAC58    <---------ARR14(2) -----DEAR3(1)   --------->MYB46(3)    --------->CCA1(1)            --------->ANAC58    --------->ARR14(2) -----ANAC58 <------ZmHOX2a(2)     --------->AHL20(2)    <---------GLK1(2)            ----------->ARR10   gtcgggactatatcgatcaacaactcatccatacagaataaatatccagagctctactcgattctccaactcgccaacaatttcagacgagatttggctt  19729600         --------->YAB1  <------MYB83--------->ICU4  <------MYB46(1)                                     --------->MYB52(2)  ----------->GT1                                   <--------P ----->ATHB12<---------TOE2(3)                    <---------MYB46(3)                  <-----------GT1 ---ANAC46  --------->YAB1                     <---------ZAT2                     <----------DOF2 ---ANAC58<---------AHL20(2)          <------ZmHOX2a(2)   ----------->GT1     ------->TEIL ---ANAC58--------->AHL20(2)    <----------DOF2--------->ZAT2           <---------AHL20(2)    -------   gatttggtgaattttaatgatgtgctaagtggaactttagatcaaaacaagctggttagtgagtgaaatttgatataatgaactcttttaatctttttat  19729700  Previous    Next  AGI:  At1g52950.1    Description:  replication protein-related. similar to unknown protein [Arabidopsis thaliana] (TAIR:AT2G05642.1); similar to hypothetical protein 31.t00031 [Brassica oleracea] (GB:ABD65118.1); contains InterPro domain Replication factor-A, C-terminal (InterPro:IPR013955); contains InterPro domain Protein of unknown function DUF223, Arabidopsis thaliana (InterPro:IPR003871); contains InterPro domain Nucleic acid-binding, OB-fold (InterPro:IPR012340); contains InterPro domain Nucleic acid-binding, OB-fold-like (InterPro:IPR016027) Range:  from: 19729151    to: 19731675    Orientation: Forward Links:  TAIR  MIPS      Please cite the corresponding publications when using AthaMap.
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