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Chromosome 1
Chromosome 2
Chromosome 3
Chromosome 4
Chromosome 5
Position
Exon region
Intron region
UTR region
AGI
% Restriction to highly conserved TF binding sites (0-100)
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1 10 20 30 40 50 60 70 80 90 100
--------->
ANAC46
--------->
ANAC58
--------->
AHL20(2)
<---------
AHL20(1)
<---------
GLK1(1)
--------->
ANAC58
--------->
AHL20(1)
--------->
ARR11(3)
--------->
ANAC46
--------->
ARR14(3)
<---------
ARR11(3)
--------->
ANAC58
--------->
ARR14(2)
--------->
ARR11(3)
<---------
AHL20(2)
<---------
ARR11(3)
<---------
ARR11(3)
--------->
YAB1
<---------
ARR14(2)
------
<---------
ARR11(3)
--------->
AHL20(2)
<---------
ARR14(3)
<-----
--------->
ARR11(3)
<---------
AHL20(2)
--------->
ARR11(3)
<---------
TOE2(3)
<------
ZmHOX2a(1)
--------->
YAB1
--------->
ANAC58
<---------
HSFB2a(2)
<------
ZmHOX2a(1)
aggttaggatattagatattagatatcacgaatattaattaaaacactccacgacttcaaaacaagatattgttgtttgagaagttgcaaaggttaggat
19728800
---------->
ID1
<-----------
RAV1(1)
<-
<----------
DOF2
<-
--------->
ANAC46
<---------
YAB1
------->
TEIL
<-----
<---------
AHL20(2)
----------->
GT1
--------->
ARR14(2)
<-----
--------->
AHL20(2)
<---------
AHL20(1)
<---------
ARR14(2)
<-----
--------->
TOE2(3)
------>
NtERF2
--------->
AHL20(1)
<---------
ARR11(1)
<--------
--------->
YAB1
<<<<<<<<<
TAC1
--------->
AHL20(2)
<---------
ARR14(1)
------------
<---------
YAB1
--------->
YAB1
<---------
ARR11(3)
<---------
CCA1(2)
<-----------
--->
ARR11(3)
<---------
AHL20(2)
<---------
AHL20(2)
<---------
ANAC55(2)
<------------
----
ARR11(3)
--------->
AHL20(2)
--------->
ARR11(3)
--------->
ANAC55(2)
------------>
CBF
attatcacaaatattaattaaaacactcgacgactcaaaacaatatattgttatttgagaaaatgcaaaacgtatcttttgttgttttgaacaatttatg
19728900
-------->
ATHB1
--------->
AHL20(2)
<---------
AHL20(2)
<---------
ICU4
<--------
HAHB4
------------>
CBF
--------->
GLK1(1)
--------->
ANAC58
<---------
CCA1(2)
--------->
ANAC58
--------->
ANAC58
<-------
TEIL
--------->
ANAC58
<-------
TEIL
--------->
ANAC46
--------->
ARR14(1)
--------
WRKY12
--------->
CCA1(2)
--------
WRKY38(1)
--------->
ARR14(2)
----
TOE1(3)
--------->
ARR11(1)
----
TOE2(3)
<---------
ARR14(2)
--------->
ARR11(3)
----
YAB1
----------->
ARR10
<---------
ARR11(3)
-
AHL20(2)
---------->
DOF2
--------->
ATHB51
------>
ZmHOX2a(1)
<-----------
GT1
--->
AGL15
--------->
ANAC58
<---------
ATHB12
<---------
ARR14(2)
<xxxxxxxxxxxxxxxxxxxxxxx
smallRNA(se3)
----
AGL15
--------->
ANAC58
<---------
ATHB51
--------->
ARR14(2)
--------->
YAB1
<xxxxxxxxxxxxxxxxxxx
-----
AGL3
--------->
ANAC46
--------->
ICU4
<---------
CCA1(2)
--------->
AHL20(2)
<xxxxxxxxxxxxxxxx
gtaaacgcatttctcgcaaagatacgttcgcaattatttctcttggtatatcttcctcttaacaaataatattccatataacaaatcgaaacacacttat
19729000
<---------
YAB1
----------->
TBP
------>
ZmHOX2a(2)
<xxxxxxxxxxxxxxxxxxxxxx
smallRNA(le3)
--------->
GLK1(1)
xxxxxxxxxxxxxxxxxxxxxxx>
smallRNA(si3)
<------
ZmHOX2a(2)
------>
ZmHOX2a(2)
--------->
YAB1
--------
--------->
ARR14(3)
<------
ZmHOX2a(2)
<---------
YAB1
<-------
<---------
AGP1
--------->
GLK1(1)
--------->
ICU4
--------->
ANAC46
<---------
ARR14(3)
<---------
ARR14(2)
<---------
ALFIN1
--------->
ANAC58
<---------
ARR14(2)
--------->
ARR14(2)
--------->
ANAC46
--------->
ANAC58
--------->
ARR14(2)
--------->
ARR14(3)
<---------
MYB55(2)
--------->
TOE2(3)
<---------
ARR11(3)
<---------
ARR11(3)
--------->
MYB46(3)
<---------
ARR11(3)
--------->
ARR11(3)
--------->
ARR11(3)
--------->
ANAC46
<---------
AHL20(2)
--------->
TOE1(3)
xxxx
smallRNA(s2)
<---------
AGP1
xxxxxxxxxxxxxxxxxx>
smallRNA(se3)
<------
ZmHOX2a(1)
xxxxxxx
smallRNA(fl3)
<---------
ARR14(3)
<xxxxxxxxxxxxxxxxxxxxx
smallRNA(i2)
--------->
ARR11(3)
-
caaatcgaagatctctatctaaatcgaagatctctatctatctaatccacccagcacttattataaataaacgtgagtaggaataccttcacgatatcaa
19729100
<---------
At4g35610
--------->
ANAC46
<---------
REM1(2)
<---------
ICU4
--------->
YAB1
--------->
AtLEC2
<xxxxxxxxxxxx
---->
CBF
--------->
AHL20(2)
------>
MYB46(1)
<---------
ARR14(2)
<-----------
GT1
--
YAB1
--------->
YAB1
------>
MYB83
----------->
GT1
--------->
At4g35610
------>
TEIL
------------>
CBF
<xxxxxxxxxxxxxxxxxxxxxxx
smallRNA(i2)
--------->
YAB1
xxxxxxxxx
tgtgccttctctcataaaccaattcattactcactgcaaaaccaaacaaa
atggatgaagtgaatccatacacagctatcaaaaacttgaaaccgttcaa
19729200
<---------
YAB1
<--------
HAHB4
--------->
YAB1
-------->
ATHB1
<---------
ICU4
<---------
ATHB12
<---------
HSFB2a(2)
---
--------->
ICU4
--------->
HSFB2a(2)
<---------
At4g35610
xxxxxxxxxxxxxxxxxxxxxxx>
smallRNA(se3)
<xxxxxxxxxxxxxxxx
smallRNA(i)
<---------
At4g35610
----------->
GT1
--------->
LBD16
--------->
ARR14(2)
--------->
At4g35610
<xxxxxxxxxxxxxxxxxxxx
smallRNA(si3)
xxxxxxxxxxxxxxxxxxxxxxx>
smallRNA(si3)
--------->
At4g35610
<---------
ANAC46
<---------
ANAC58
--------->
GLK1(2)
<---------
YAB1
<------
ZmHOX2a(1)
xxxxxxxxxx
smallRNA(si3)
<---------
ANAC58
<---------
ARR14(2)
xxxxxxxxxxxxxxxxxxxxxxx>
smallRNA(i2)
xxxxxxxxxxxxxx>
smallRNA(i2)
<---------
ANAC46
--------->
HSFB2a(1)
--------->
ICU4
<---------
TOE2(3)
aacctcttggtgtattcaagttaaaattcttcatgcgtggaatcattataccaaaggttctgggatgtcttatgaaatgatgttagcagatgaggat
gta
19729300
<---
<----
--------->
AHL20(2)
-----
<---------
MYB46(3)
-----
--------->
YAB1
<---------
AHL20(2)
<----
<-----------
GT1
--------->
TOE2(3)
<-----------
GT1
--------->
LBD16
<----------
DOF2
--------->
TOE1(3)
<-----------
GT1
--------->
ANAC55(2)
<---------
LBD16
------>
ICU4
--------->
YAB1
<----------
DOF2
--------->
ZAT6
<---------
LBD16
agtattttagactttacaatttgtctataatcttaatggttgtctttaattgtttttaactctcgcattcacgttttcttatgctattttcag
ggaaata
19729400
--------->
AHL20(2)
--------->
YAB1
<------
ZmHOX2a(1)
<---------
ATHB12
--------->
ANAC46
--------->
ZAT14
---
---------->
DOF2
--------->
ZAT18
<--
------
AHL20(2)
<---------
ZAT14
<------
ZmHOX2a(1)
---
-----
AHL20(2)
--------->
ARR11(3)
<<<<<<<<<<<<<<<<<
LFY
<---
---->
AHL20(2)
<---------
ARR11(3)
--------->
CCA1(2)
<---------
KAN4(2)
<----
---->
AHL20(1)
<-----------
ARR10
<---------
YAB1
--------->
WOX13(1)
<----
-----
AHL20(1)
---------->
DOF2
--------->
ZAT14
<---------
ARR14(2)
<------
ZmHOX2a(1)
<----
aaattcaagcaggaataaaaaaggaacatctactcaaactacagaggtatgtgaagataggacactggacaatcatcgaggaattttcagtgactaaggc
19729500
<------
NtERF2
----
------>
ATERF1(1)
<------
----
NtERF2
--------->
WOX13(1)
--------->
GLK1(1)
----------->
RAV1(1)
<------
------>
ALFIN1
--------->
ARR11(3)
------>
NtERF2
<------
--------
HVH21
--------->
RVE1(1)
--------->
ANAC46
--------->
CCA1(2)
-----
ANAC58
--------->
AtLEC2
--------->
LBD16
--------->
ANAC58
<---------
ARR14(2)
-----
DEAR3(1)
--------->
MYB46(3)
--------->
CCA1(1)
--------->
ANAC58
--------->
ARR14(2)
-----
ANAC58
<------
ZmHOX2a(2)
--------->
AHL20(2)
<---------
GLK1(2)
----------->
ARR10
gtcgggactatatcgatcaacaactcatccatacagaataaatatccagagctctactcgattctccaactcgccaacaatttcagacgagatttggctt
19729600
--------->
YAB1
<------
MYB83
--------->
ICU4
<------
MYB46(1)
--------->
MYB52(2)
----------->
GT1
<--------
P
----->
ATHB12
<---------
TOE2(3)
<---------
MYB46(3)
<-----------
GT1
---
ANAC46
--------->
YAB1
<---------
ZAT2
<----------
DOF2
---
ANAC58
<---------
AHL20(2)
<------
ZmHOX2a(2)
----------->
GT1
------->
TEIL
---
ANAC58
--------->
AHL20(2)
<----------
DOF2
--------->
ZAT2
<---------
AHL20(2)
-------
gatttggtgaattttaatgatgtgctaagtggaactttagatcaaaacaagctggtta
gtgagtgaaatttgatataatgaactcttttaatctttttat
19729700
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AGI:
At1g52950.1
Description:
replication protein-related. similar to unknown protein [Arabidopsis thaliana] (TAIR:AT2G05642.1); similar to hypothetical protein 31.t00031 [Brassica oleracea] (GB:ABD65118.1); contains InterPro domain Replication factor-A, C-terminal (InterPro:IPR013955); contains InterPro domain Protein of unknown function DUF223, Arabidopsis thaliana (InterPro:IPR003871); contains InterPro domain Nucleic acid-binding, OB-fold (InterPro:IPR012340); contains InterPro domain Nucleic acid-binding, OB-fold-like (InterPro:IPR016027)
Range:
from: 19729151
to: 19731675
Orientation: Forward
Links:
TAIR
MIPS
Please cite the corresponding
publications
when using AthaMap.