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Chromosome 1
Chromosome 2
Chromosome 3
Chromosome 4
Chromosome 5
Position
Exon region
Intron region
UTR region
AGI
% Restriction to highly conserved TF binding sites (0-100)
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1 10 20 30 40 50 60 70 80 90 100
----->
HAHB4
--------->
ANAC55(2)
<----
------>
YAB1
<-----------
GT1
--------->
ANAC58
------
YAB1
--------->
AHL20(2)
--------->
ANAC46
----->
ICU4
<---------
AHL20(2)
--------->
ANAC58
>
ANAC55(2)
--------->
AHL20(1)
------>
MYB46(1)
-
ANAC55(2)
<---------
AHL20(2)
------>
MYB83
-----
>
ANAC58
<---------
AHL20(1)
--------->
TOE2(2)
>
ANAC46
--------->
AHL20(2)
<-----------
GT1
--------->
MYB46(3)
>
ANAC58
<---------
AHL20(2)
---------->
DOF2
<---------
MYB52(2)
>
ANAC55(1)
--------->
AHL20(2)
--------------->
AGL15
--------->
AHL20(2)
--------->
MYB52(1)
-
GT1
<---------
AHL20(1)
<---------------
AGL15
--------->
AHL20(2)
<---------
MYB55(2)
taatagttttaaaaaatttaatttacataatagaaaactaataaaagtatttttactatgtcaaaaaatataagaaaacaaaccaacgtaacacataaaa
19524000
--------->
ANAC46
<---------------
AtSPL8
<---------
ARR11(3)
<---------
ANAC58
--------->
ARR11(3)
<---------
ANAC58
-----
AHL20(2)
<---------------
AtSPL3
<-----------------
AGL2
---->
AHL20(2)
------->
TEIL
<---------
WRKY18(1)
--------->
WOX13(1)
---------->
DOF2
aaatgagatgttcaaaaacgaatttgtacgagcttgaccacttaactattgagcaatctgatttgggaatggaaggcataaccaaaaaaaaaagagatgt
19524100
<---------
AHL20(2)
--------->
AHL20(2)
--------->
YAB1
<---------
YAB1
--------->
TOE2(3)
<-----
<----------
DOF2
--------->
YAB1
--------->
ARR11(3)
<---------
DAG2
<---------
CCA1(2)
<---------
ARR11(3)
<---------
AHL20(2)
<-----------
GT1
------>
ZmHOX2a(1)
<---
--------->
AHL20(1)
<---------
AHL20(2)
<-----------
GT1
<--------
--------->
AHL20(2)
<---------
ICU4
---------->
ID1
<--------
--------->
AHL20(2)
--------->
AHL20(2)
<-----------
GT1
---------
<---------
AHL20(2)
<---------
AHL20(2)
---------->
ID1
--------->
YAB1
gtttttaaaaaaattgactttattaaaataaatatttctatcttagttattccatcaatagttttttttttgttttttttcctatttccatgatattatt
19524200
<---------
AHL20(2)
--------->
AHL20(1)
<---------
AHL20(1)
<---------
AHL20(2)
--------->
AHL20(2)
--------->
AHL20(2)
--------->
AHL20(2)
<---------
AHL20(2)
<---------
AHL20(2)
--------->
YAB1
--------->
AHL20(2)
--------->
AHL20(2)
<---------
AHL20(2)
<---------
ICU4
--------->
ANAC46
----
YAB1
--------->
YAB1
--------->
YAB1
--------->
ANAC58
------
AHL20(2)
<-----------
HVH21
<---------
AHL20(2)
<---------
ALFIN1
<------
-
AHL20(2)
--------->
AHL20(2)
--------->
AHL20(2)
<----------
DOF2
<------
-
YAB1
<---------
AHL20(1)
--------->
TOE2(3)
<-----------
GT1
--------->
ANAC46
>
ICU4
--------->
YAB1
--------->
YAB1
<---------
At4g35610
--------->
ANAC58
-------
attttcaataaaattataaaatgtcacatttactaatattaattatattatttcacatctagctgtttaacttttgctacacacaaaatgagttatctag
19524300
----------->
GT1
>>>>>>>>>>
AtMYB44
--------->
MYB59
--------->
MYB46(2)
--------->
MYB52(2)
--------->
MYB111(1)
<---------
MYB52(1)
<---------
O2
------------>
MYB.PH3(2)
--------->
ANAC58
<---------
TOE2(3)
<---------
ARR14(2)
--------->
ANAC58
<<<<<<<<<<
GATA-1
<---------
ARR11(1)
--------->
O2
<---------
GLK1(1)
--------->
ARR14(2)
*
TSS
---
HSFB2a(2)
--------->
GLK1(1)
<---------
ARR14(1)
-----
---
HSFC1(1)
---------->
DOF2
<-------
MYC3
<---------
CCA1(2)
-----
-->
HSFB2a(2)
--------->
CCA1(2)
------->
MYC3
<---------
AHL20(2)
<---------
YAB1
--
aagaagagccacgagataaaagaatgaaatccacgtttaagttagttacaacggttttattttataagcgtatccatagctatgtgatgcttcttc
aagc
19524400
<---------------
AGL15
--------->
ARR14(2)
<---------
ARR14(2)
<----------
DOF2
------->
TEIL
--------->
ANAC46
<---------
ANAC58
<---------
CCA1(2)
<---------
GLK1(1)
<---------
ANAC58
<---------
ANAC46
--------->
GLK1(1)
<---------
HSFB2a(1)
--------->
ARR14(2)
<---------
GLK1(2)
--------------->
AGL15
--------->
HSFC1(2)
<---------
ARR14(2)
--------->
ARR11(3)
<-----------------
AGL3
<---------
HSFC1(2)
------->
TEIL
<---------
ARR11(3)
<-----------------
AGL2
--------->
HSFB2a(1)
<---------
CCA1(2)
---->
TOE2(3)
----------------->
AGL2
------->
TEIL
<---------
ANAC58
<----------
DOF2
---->
TOE1(3)
<-----------------
AGL1
--------->
AtLEC2
<---------
ANAC58
------>
ZmHOX2a(1)
-------->
DOF2
------>
ZmHOX2a(1)
--------->
REM1(1)
<---------
ANAC46
<----------
DOF2
ttaaagattttgtgtatcctcgttcttgta
atggaaatctacaccatgaaaacgaattttcttgtactggctttgtctttgtgtatccttctttcaagct
19524500
<<<<<<<<<<
GT-3b
----------->
GT1
<---------
YAB1
----------->
GT1
--------->
ATHB51
--------->
MYB59
--------->
AHL20(2)
--------->
ANAC46
<-
>>>>>>>
GRF7
<---------
AHL20(2)
--------->
AHL20(2)
<----------
DOF2
<-----------
RAV1(2)
<---------
ICU4
--------->
AHL20(2)
------->
TEIL
<----
<-----------
HVH21
--------->
ICU4
<---------
AHL20(2)
<---------
CCA1(2)
<---------
ANAC58
<---------
AHL20(2)
--------->
YAB1
------->
TEIL
<------
ZmHOX2a(1)
<---------
ANAC46
--------->
AHL20(2)
--------->
TOE2(3)
--------->
ANAC58
=======
<---------
ANAC58
<----------
DOF2
--------->
TOE1(3)
--------->
ANAC58
<--------
tccatgaggtttcttgtcag
gtagaaaaaaacatgtcttttaattatttttctttcaaccttaaaaataattttcaacgcatcttgtatctttttag
gat
19524600
<---------
TOE2(2)
--------->
KAN4(2)
<---------
TOE1(2)
<---------
MYB46(3)
<---------
YAB1
--------->
HSFB2a(1)
<---------
TOE2(3)
<---------
AtMYB61
----------->
GT1
<------
ZmHOX2a(1)
<---------
ANAC55(2)
--------
YAB1
==================================
HOX2a_HOX2a
<---------
ALFIN1
-----
YAB1
------>
ZmHOX2a(2)
<---------
YAB1
<---------
ETT(1)
<---
==============================
HOX2a_HOX2a
<---------
TOE2(3)
--------->
MYB52(1)
<----------
DOF2
-
TOE2(3)
<---------
AGP1
--------->
ICU4
<---------
HSFB2a(1)
--------->
ANAC55(2)
<-------
gatggtagtggtttgagtaatttggatctaatagaacgtgattatcaag
gtaaggacattctcagaaataccgacacttatccaaggttttctttctttt
19524700
------>
ZmHOX2a(2)
<------
ZmHOX2a(2)
---------
<--------
--------->
ARR11(3)
<------
ZmHOX2a(2)
--------->
ARR11(3)
<---------
TOE2(3)
=============================
HOX2a_HOX2a
<---------
TOE1(3)
==================
HOX2a_HOX2a
<---------
ANAC58
--------->
HSFB2a(2)
<------
ZmHOX2a(1)
<---------
ARR11(3)
<---------
ANAC46
<----------
DOF2
<---------
ZAT6
==============================
HOX2a_HOX2a
<---------
ANAC58
<---------
GLK1(2)
<---------
HSFB2a(2)
--------->
ANAC58
<---------
AGP1
------
AHL20(2)
--------->
MYB59
<----------
DOF2
<---------------
AGL15
<---------
ARR11(3)
---
DOF2
<---------
WOX13(1)
<-----------
GT1
<-----------
HVH21
--------->
ANAC58
<---------
ZAT6
tatttgttttcttggattgattttaggttctctttttttctttctag
atagtgtcaatgctcttcaaggcaaggacgatgaagatcagt
gtaagatctct
19524800
<-------
TEIL
--------->
CCA1(2)
--------->
ARR11(1)
<---------
ANAC58
<---------
GLK1(2)
--------->
ARR11(3)
--------->
ARR11(3)
--------->
At4g35610
---------->
DOF2
<---------
ARR11(3)
<---------
At4g35610
--------->
At4g35610
<---------
CCA1(2)
<---------
ZAT2
<---------
ZAT2
>
GLK1(1)
<---------
ANAC58
----------->
HVH21
--------->
ZAT2
----------->
GT1
-
-
GLK1(1)
<----------
DOF2
<---------
YAB1
<---------
At4g35610
<--
ctctctatatctctttcttgattctatttttgttatgtttgtgacagcttctatgtttctgtgtgtcttcag
ctgcaaagatacagagtgaaaaccagaa
19524900
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AGI:
At1g52410.1
Description:
TSA1 (TSK-ASSOCIATING PROTEIN 1); calcium ion binding / protein binding. similar to (TSA1-LIKE), protein binding [Arabidopsis thaliana] (TAIR:AT3G15950.1); similar to AGAP002737-PA [Anopheles gambiae str. PEST] (GB:XP_312188.4)
Range:
from: 19524397
to: 19529293
Orientation: Forward
Links:
TAIR
MIPS
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publications
when using AthaMap.
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