Home Tools   - Search   - Colocalization   - Gene Analysis   - Gene Identification   - Small RNA Targets   - MicroRNA Targets Description Documentation Citations Downloads Publications History Contact Links Disclaimer	Search   Chromosome 1 Chromosome 2 Chromosome 3 Chromosome 4 Chromosome 5    Position Exon region Intron region UTR region AGI % Restriction to highly conserved TF binding sites (0-100)   Go to graphical and table display  1        10        20        30        40        50        60        70        80        90        100                                      --------->AHL20(1)                                    --------->AHL20(2)                                    <---------AHL20(2)                                    <---------AHL20(1)                       --------->HSFB2a(2)                   --------->ARR14(2)  <---------AHL20(2)                  <---------CCA1(2)--------->YAB1                                      <---------ANAC58                ==============HOX2a_HOX2a                                     ------->GAMYB    --------->TOE1(3)  <---------HSFB2a(2)     <---------At4g35610           xxxxxxxxxxxxxxxx>smallRNA(s)    --------->TOE2(3)  ------>ZmHOX2a(1)       --------->At4g35610          --------->At4g35610 <-----------GT1------>ZmHOX2a(2)  --------->AHL20(2)                       xxxxxxxxxxxxxxxxxxxxxxx>smallRNA(i2) ------------->WRI1<---------ARR14(2)  <---------YAB1              --------->DAG2      <---------ANAC58 ---DOF2      --------->ARR14(2)  <---------YAB1                  ---------->DOF2     <---------STY1(2)   tgtttaccttcaactggatcgtatcctagaaaaactattatattattccagcttaatctgggtatgggtaaagttatcaactgtctcttgctagggttcc  17578100                                                            <---------ICU4                                             <---------ARR14(2)                                             --------->ARR14(2)                                             <---------GLK1(2)                                 --------->ANAC58          --------->AHL20(2)                                 --------->ANAC58 --------->LBD16                               ---------->DOF2   <---------ANAC55(2)                               --                              =================================HOX2a_HOX2a    <---------MYB52(1)-----                              <------ZmHOX2a(2)  <---------ANAC46            ----------->GT1  <------                             --------->ARR11(3)  <---------ANAC58           --------->HSFB2a(2) -----                             <-----------ARR10--------->GLK1(2)             <---------HSFB2a(2)<-----        <----------DOF2     --------->At4g35610  <---------ANAC58   --------->REM1(1)    <---------YAB1  --------->MYB52(1)  ---------->DOF2  ----------->HVH21<------ZmHOX2a(1)------>ZmHOX2a(1)--------->YAB1   aaactatcggcatttttgatgtcttaaagcagatcaagccctggacagattccgtagaggaataaatactacatccttctggtaattccatatgataacg  17578200                                                                   --------->ZAT18                                                                   <xxxxxxxxxxxxxxxxxxxxxxsmallRNA(i2)                                                                  <------ZmHOX2a(1)                                                           --------->ARR14(2)                                                           <---------ARR14(2)                                                         --------->LBD16                                                        <---------ANAC46                                                        --------->ANAC55(2)                                                        <---------ANAC58    --------->ZAT2                                      <---------ANAC58    <---------At4g35610              <---------ZAT14    <---------ANAC55(2)    --------->At4g35610         <---------GLK1(1)      <---------LBD16 -------->DOF2              --------->HSFB2a(2)    <-----------RAV1(1)           ---------->ID1 ---->TOE1(3)            <----------DOF2           <---------REM1(1)    --------->ANAC58 ---TOE2(3)           <---------ARR11(3)          --------->ARR11(3)    --------->ANAC58 ---->TOE2(3)         --------->ARR11(3)          <---------ARR11(3)    --------->ANAC46 -----ID1 <xxxxxxxxxxxxxxxxxxxxxxxsmallRNA(se3)  xxxxxxxxxxxxxxxxxxxxxx>smallRNA(s2)   ataaagagctgagaagaagagtaagaccttttagaattctgaagtgaatgaagatgttgcggaattgaggacacaaacaacttgtcattttctatgaagc  17578300                                                                 --------->YAB1                                                               <---------WOX13(1)                                                             --------->ATHB12                                                             <---------MYB46(3)                  ----                   <---------PCF2                           <---------YAB1                  ---------                --------->ALFIN1                          <---------MYB46(3)              ------->GAMYB              <---------TGA1a                            <---------DEAR3(1)              --------->ANAC58              <---------ANAC46                           --------->ALFIN1                --------->ANAC58              <---------ANAC58                           <---------AtMYB61               --------->ANAC46              <---------ANAC58                        <---------MYB46(3)            --------->ANAC58              <---------MYB46(3)                      <---------DEAR3(1)            --------->ANAC46             <---------DEAR3(1)                       ------>ZmHOX2a(2)             --------->ANAC58            ------>NtERF2                           --------->ARR14(2)     <---------HSFC1(2)    ----   ---------->DOF2 ----------->HVH21                <---------ARR14(2)  ---------->DOF2--------->MYB52(1)   =====================bZIP_DOF      xxxxxxxxxxxxxxxxxxxxxxx>smallRNA(se3)--------->HSFC1(2)    ----   aaactaaaagactcggccgtggggaccgagtttcgaacaagttgatgaaatatggatcggtggtgattgataaccaaagcttcgacacacaacgaaacct  17578400                                           <------ZmHOX2a(2)                                           ==============HOX2a_HOX2a                                          --------->ARR11(3)                                          --------->ARR14(2)                                          <---------ARR14(2)                                          --------->AGP1                                   <---------TOE1(2)                                   <---------TOE2(2)                             <---------GLK1(1)                            <-----------ARR10<---------HSFB2a(2)       >>>>>>>>>ARR2                            --------->ARR11(3)                        <------------------------ANAC81                            <---------ARR11(3)                    xxxxxxxxxxxxxxxxxxxxxxx>smallRNA(fl3)                   --------->TOE2(3)    --------->MYB59      <---------ZAT2      <---------GLK1(1)     --------->ARR14(2)               <---------At4g35610           --------->HSFB2a(2) ----->ANAC58      --------->TOE1(3)    ----------->ARR10   ------->TEIL              <----------DOF2 >ARR14(2) <-----------RAV1(2)    --------->LBD16     <----------ID1  --------->ATHB12<---------DAG2 ----->ANAC46  <--------P   <---------ARR14(2)--------->LBD16--------->At4g35610<----------DOF2    <- ----->ANAC58 <---------MYB52(1) <---------TOE1(1)<------ZmHOX2a(1)  <---------YAB1<-----------GT1 <-   cgcaatagatttctcaggtagccttaagagtatctccgaggttagatccagaggaagggacgaagctgattttgattgtgttcttttacttttcgagact  17578500                                                xxxxxxxxxxxxxxxx>smallRNA(s)                                              xxxxxxxxxxxxxxxx>smallRNA(s)                                   <xxxxxxxxxxxxxxxxsmallRNA(s)                               <xxxxxxxxxxxxxxxxxxxxsmallRNA(fl3)                              <----------DOF2--------->TOE2(3)                             <xxxxxxxxxxxxxxxxxxxxxxxsmallRNA(si3)                             <xxxxxxxxxxxxxxxxxxxxxxsmallRNA(se3)                             <xxxxxxxxxxxxxxxxxxxxxxsmallRNA(fl3)                            <xxxxxxxxxxxxxxxxxxxxxxxsmallRNA(le3)                            <xxxxxxxxxxxxxxxxxxxxxxxsmallRNA(se3)                            xxxxxxxxxxxxxxxxxxxxxxx>smallRNA(se3)                            <xxxxxxxxxxxxxxxxxxxxxxxsmallRNA(si3)                            <xxxxxxxxxxxxxxxxxxxxxxxsmallRNA(fl3)                            <xxxxxxxxxxxxxxxxxxxxxxxsmallRNA(s2)                            <xxxxxxxxxxxxxxxxxxxxxxxsmallRNA(i2)                            <xxxxxxxxxxxxxxxxxxxxxxsmallRNA(i2)                            <xxxxxxxxxxxxxxxxxxxxxxxsmallRNA(l2)                           <xxxxxxxxxxxxxxxxxxxxxxxsmallRNA(se3)                           <xxxxxxxxxxxxxxxxxxxxxxxsmallRNA(si3)                           <xxxxxxxxxxxxxxxxxxxxxxsmallRNA(si3)                           <xxxxxxxxxxxxxxxxxxxxsmallRNA(i2)                          <xxxxxxxxxxxxxxxxxxxxxxxsmallRNA(si3)                          <xxxxxxxxxxxxxxxxxxxxxxxsmallRNA(fl3)                         <xxxxxxxxxxxxxxxxxxxxxxxsmallRNA(i2)                         <xxxxxxxxxxxxxxxxxxxxxsmallRNA(si3)                        <xxxxxxxxxxxxxxxxxxxxxxsmallRNA(le3)                        <xxxxxxxxxxxxxxxxxxxxxxsmallRNA(s2)                        <xxxxxxxxxxxxxxxxxxxxxxsmallRNA(i2)                                         <                        <xxxxxxxxxxxxxxxxxxxxxxxsmallRNA(i2)                                        <                        <xxxxxxxxxxxxxxxxxxxxxxsmallRNA(l2)                 <---------DAG2          -                        <xxxxxxxxxxxxxxxxxxxxxxxxsmallRNA(l2)            <-----------GT1          ---                        <xxxxxxxxxxxxxxxxxxxxxxsmallRNA(si3)           <xxxxxxxxxxxxxxxxxxxxxxxsmallRNA(se3)                       <xxxxxxxxxxxxxxxxxxxxxxxsmallRNA(si3)         <xxxxxxxxxxxxxxxxxxxxxxxsmallRNA(si3)                       <xxxxxxxxxxxxxxxxxxxxxxxsmallRNA(le3)         <----------DOF2              <--                       <xxxxxxxxxxxxxxxxxxxxxxxsmallRNA(i2)         <---------ANAC46       <-------TEIL                      xxxxxxxxxxxxxxxxxxxxxx>smallRNA(fl3)          <---------ANAC58   <---------AHL20(1)                      <xxxxxxxxxxxxxxxxxxxxxxsmallRNA(si3)          <---------ANAC58   <---------ARR11(3)                  <-----------RAV1(1)        --------->TOE1(3) <-----------RAV1(1)    ----------->TBP                <xxxxxxxxxxxxxxxxxxxxxxxsmallRNA(si3)          --------->ALFIN1   ------------>CBF<-- --------DAG2<xxxxxxxxxxxxxxxxxxxxxxxsmallRNA(i2)          xxxxxxxxxxxxxxxxxxxxxxx>smallRNA(fl3)----- ---------DOF2<xxxxxxxxxxxxxxxxxxxxxxsmallRNA(i2)       <xxxxxxxxxxxxxxxxxxxxxxsmallRNA(le3)    <----   acttttctcttcttctgtttttgttgctccatcttttgtagtcaaaaccctaatttgttcaggctgtgttgctttcaaccttttctcaatatatacatat  17578600           <---------------AtSPL8           --------------->AtSPL8           <-------TEIL        <xxxxxxxxxxxxxxxxxxxxxxxsmallRNA(i2)      <-----------TBP      --------->AHL20(2)      <---------AHL20(2)    <-----------TBP    <---------AHL20(2)                                            ------>ZmHOX2a(2)    --------->AHL20(2)                                           <------ZmHOX2a(2)  <-----------TBP                                               <---------AGP1  --------->MYB52(1)  <---------AHL20(2)                                            --------->ARR11(3)  --------->AHL20(2)                                            <---------ARR14(3) -----------TBP                                                 --------->ARR14(3) ---------AHL20(2)                                              --------->ARR14(2) -------->AHL20(2)                                     <---------AHL20(2)  <---------YAB1 ------>AHL20(2)              <------MYB83             --------->AHL20(2)--------->YAB1 -------AHL20(2)     ------>ZmHOX2a(1)             --------->AHL20(2)    ----------->GT1 ---------TBP  ------->TEIL   <------MYB46(1)     <---------YAB1<---------ARR14(2) ---->AHL20(2) <-------TEIL  --------->MYB59 <----------DOF2    <---------ARR11(3) -------TBP--------------->AtSPL3      <-----------GT1<---------AHL20(2)<---------YAB1 <---------MYB46(3)   atatatatatatatacgtacatcctatgcattaggttttattttctacttttattatttatttgaagatcttatatgataaataagggtttgttcaaaaa  17578700                --------->MYB52(1)           <---------YAB1                                            <----------DOF2         ----------->GT1                                          ---------->ID1         --------->YAB1                    <---------HSFB2a(2) <----------DOF2        ----------->GT1                    --------->HSFB2a(2) <---------DAG2        <---------YAB1                  <----------DOF2 <xxxxxxxxxxxxxxxxxsmallRNA(se3)    --------->AHL20(2)     ------>ZmHOX2a(1)           <---------REM1(1)                <----------DOF2   aaaaaaaaaaatgataaataagggttctccttcaaacttatactttgagaagttgacatgtagcacttttccttttgacatttgtcatttcttttatact  17578800                                             <---------AHL20(2)                                    <---------YAB1                                                 --                  <---------At4g35610--------->AHL20(2)                                            --              <---------AHL20(2)  <--------HAHB4                                                   <-            <---------YAB1 >>>>>>>>>ARR2--------->AHL20(1)                           <--------ATHB1--          <---------AHL20(2)      --------->YAB1--------->AHL20(2)                  --------->ICU4 <-          --------->AHL20(2)     <---------YAB1 <---------AHL20(2)                  <---------ATHB12<       --------->TOE2(3)   <------------CBF  --------->AHL20(2)                     <---------YAB1 <-    ----------->RAV1(1)  <---------YAB1 <---------AHL20(1)            ---------->DOF2--------->ATHB12   taaatccaacatttatttttatctgatttgattgtatcattatatattaaaaaattcaaaagttttaaatcaaaaagaaatatacaatgatttgttttca  17578900              --------->AHL20(1)              <---------AHL20(1)              --------->AHL20(2)              <---------AHL20(2)             --------->AHL20(2)            <---------YAB1                                                                     <-----          --------->YAB1                                                                       <-----         <---------YAB1                                                                     ---------        <---------ARR11(3)                                                                 <---------AHL20(2)        --------->ARR11(3)                                                                 <---------ATHB51    <---------AHL20(2)                                                                     --------->AHL20(2)   --------->AHL20(2)                                                               <---------AHL20(2) ------->AHL20(1)                                                              --------->AHL20(2) --- ------->AHL20(2)                                          --------->AHL20(2)----------->GT1<-------- --------AHL20(1)                                       --------->YAB1   --------->YAB1    --------->ICU4 ------->ARR11(3)                                    --------->YAB1--------->YAB1  --------->AHL20(2) --------ARR11(3)                     <---------GLK1(2)<---------YAB1  <---------YAB1  <---------YAB1 ---------AHL20(2)     <---------ARR11(3)        <---------YAB1    --------->TOE2(3)--------->AHL20(2) --------AHL20(2)      --------->ARR11(3) <----------DOF2  <---------AHL20(2)<---------ANAC55(2)  <--   atatatttaatatcattatattgaatatctatgagagacacattctttgttatatttataataaaacaaacttaatattaagtaaatttataaataatta  17579000  Previous    Next  AGI:  At1g47765.1    Description:  F-box family protein. Identical to Putative F-box protein At1g47765 [Arabidopsis Thaliana] (GB:Q9FZF3); similar to F-box family protein [Arabidopsis thaliana] (TAIR:AT1G47790.1); similar to hypothetical protein [Vitis vinifera] (GB:CAN60954.1); contains InterPro domain F-box associated type 3 (InterPro:IPR013187); contains InterPro domain Cyclin-like F-box (InterPro:IPR001810); contains InterPro domain F-box associated type 1 (InterPro:IPR006527) Range:  from: 17577346    to: 17578532    Orientation: Reverse Links:  TAIR  MIPS      Please cite the corresponding publications when using AthaMap.
	printer-friendly version