Home Tools   - Search   - Colocalization   - Gene Analysis   - Gene Identification   - Small RNA Targets   - MicroRNA Targets Description Documentation Citations Downloads Publications History Contact Links Disclaimer	Search   Chromosome 1 Chromosome 2 Chromosome 3 Chromosome 4 Chromosome 5    Position Exon region Intron region UTR region AGI % Restriction to highly conserved TF binding sites (0-100)   Go to graphical and table display  1        10        20        30        40        50        60        70        80        90        100                                                        ----------->RAV1(1)                                                      ------>MYB46(1)                                                   --------->ANAC58                                                   --------->ANAC46 <---------GLK1(1)                     --------->ANAC58       <---------ZAT2       --------->LBD16                     --------->ANAC58       --------->ZAT2      <---------HSFB2a(2)                     --------->ANAC46       --------->At4g35610 --------->HSFB2a(2)                   ---------->DOF2          <---------At4g35610<---------ANAC46                  <---                 <---------YAB1            ------>NtERF2       <---------LBD16  --------->WRKY38(1)               --------->YAB1            <------NtERF2------>MYB83  --------->GLK1(1)            <--- ---ZmHOX2a(1)<---------ATHB12           --------->ATERF1(1)  <---------LBD16   --------->WRKY12 <--- -HVH21----------->HVH21          --------->ZAT14  --------->ANAC58--------->ARR14(2)   <----------DOF2   gatgaagagttgacaaatgataaaagccattaccagagaagtcgccagctcaaacccaacaattttcgggaaatgccatccattgactctctttagatag  17513500                                  <-------MYC2                                  <-------MYC3                                  ------->MYC3                                  <-------MYC4                              --------->ZAT18                              --------->ZAT14                              <---------ZAT18                                                      xx                              <---------ZAT14                                                      xx                           --------->RAP2.6(3)                                                    xxx                         <---------YAB1                                                         xxxxx     ------>ZmHOX2a(2) <---------ICU4      <---------YAB1<---------YAB1                        xxxxxx <---------YAB1        --------->YAB1   <---------ARR14(2)     ----------->RAV1(2)            ------- ------ANAC58         --------->ICU4------->MYC3       ----------->GT1                      --------- ------ANAC46      <---------ANAC46 <-------MYC3   --------->ARR11(3)            --------->TOE2(3)xxx ------ANAC58 <-----------RAV1(1) ------->MYC2     <---------ARR11(3)          <---------TOE2(3)<xxxx   cttgtgatcgaaggcattgttgcgatgatgactgcacatgtgtatatgatagagatattgtgaatacctgagtttgacataaacgttatatggaagtaag  17513600                                                         xxxxxxxxxxxxxxxx>smallRNA(s)                                                         <xxxxxxxxxxxxxxxxsmallRNA(s)                                                         <-----------RAV1(1)                                                        <xxxxxxxxxxxxxxxxsmallRNA(i)                                                        xxxxxxxxxxxxxxxx>smallRNA(s)                                                       xxxxxxxxxxxxxxxx>smallRNA(s)                                                      xxxxxxxxxxxxxxxx>smallRNA(s)                                                      ------>NtERF2                                                      <xxxxxxxxxxxxxxxxsmallRNA(s)                                                      xxxxxxxxxxxxxxxx>smallRNA(i)                                                     <---------ETT(2)                                                     --------->ETT(2)                                                     <xxxxxxxxxxxxxxxxsmallRNA(i)                                                     <xxxxxxxxxxxxxxxxsmallRNA(s)                                                   <xxxxxxxxxxxxxxxxsmallRNA(s)                                                   xxxxxxxxxxxxxxxxxxxxxxx>smallRNA(fl3)                                                   <xxxxxxxxxxxxxxxxsmallRNA(i)                                                   ------>NtERF2                                                   <---------ATERF1(1)                                                  <---------DEAR3(1)                                                 xxxxxxxxxxxxxxxx>smallRNA(s)                      <x                                                 --------->ATERF1(1)                               xx                                                <---------At4g35610                                xx                                               <---------MYB46(3)                                  xx                                               <---------DEAR3(1)                                xxxx                      <---------ARR14(2)     <-----------HVH21                                   <xxx                      xxxxxxxxxxxxxxxx>smallRNA(i)<xxxxxxxxxxxxxxxxsmallRNA(s)           <xxxxxxxxxxx                   <---------TOE1(2)        <xxxxxxxxxxxxxxxxsmallRNA(s)               <xxxxxxxxxxxxx              <-----------HVH21         <xxxxxxxxxxxxxxxxsmallRNA(s) <---------YAB1   <xxxxxxxxxxxxxx             <-----------RAV1(1)      <-----------HVH21<xxxxxxxxxxxxxxxxsmallRNA(s)   <xxxxxxxxxxxxxx           <---------ANAC58           <xxxxxxxxxxxxxxxxxxxxsmallRNA(le3)             ----------->RAV1(1)     --------->MYB52(2)             <---------ANAC58<------NtERF2 <----------DOF2    <xxxxxxxxxxxxxxx   <---------MYB52(1) --------->ARR14(2)<---------MYB46(3)       <xxxxxxxxxxxxxxxxxxxxxxxsmallRNA(fl3) xxxxxxxxxxxxxx>smallRNA(s)         <xxxxxxxxxxxxxxxxsmallRNA(s) xxxxxxxxxxxxxxxx>smallRNA(s)  <----- xxxxxxxxxxxxxx>smallRNA(i)         <---------RAP2.6(2)xxxxxxxxxxxxxxxx>smallRNA(i) ----------->HVH21 xxxxxxxxxxxxx>smallRNA(i)          <---------ANAC58<xxxxxxxxxxxxxxxxsmallRNA(i) --------->TOE1(2) xx xxxxxxxxxxx>smallRNA(i)         xxxxxxxxxxxxxxxxxxxxxxx>smallRNA(fl3)    --------->At4g35610-------- xxxxxxxxxx>smallRNA(i)<------ZmHOX2a(2)<---------DEAR3(1)      xxxxxxxxxxxxxxxx>smallRNA(s) xxxxxxxx --->DOF2  <---------ANAC58   --------->ARR11(3)<xxxxxxxxxxxxxxxxsmallRNA(s)    --------->MYB46(3)xxx -------------->TaNAC69(2)    <---------ARR11(3)--------->At4g35610<xxxxxxxxxxxxxxxxxxxxxxsmallRNA(fl3) xxxxxxxxxxxxx>smallRNA(s)--------->LBD16   <xxxxxxxxxxxxxxxxsmallRNA(i) ------>ZmHOX2a(2) xxxxxxxxxx xxxxxxxxxxxxsmallRNA(i)------>ZmHOX2a(2)   <---------MYB46(3)xxxxxxxxxxxxxxxx>smallRNA(s)<xxxxxxxxxx   gccctgttcgtttccttgtcgctggatccagagatattgcggtcgctggtcgctggcgactgtcgctacttttgatcgctgaaccagcgacagacaaacg  17513700                                              <---------MYB52(2)                                           xxxxxxxxxxxxxxxx>smallRNA(s)                                        --------->AtLEC2                                        xxxxxxxxxxxxxxxx>smallRNA(i)                      <xxxxxxxxxxxxxxxxsmallRNA(s)                      <xxxxxxxxxxxxxxxxsmallRNA(i)           <---------At4g35610          --------->ANAC58           --------->At4g35610     xxxxxxxxxxxxxxxxxxxxxx>smallRNA(fl3)           xxxxxxxxxxxxxxxxxxxxxxxx>smallRNA(si3)          <---------DEAR3(1)       ----------->HVH21          xxxxxxxxxxxxxxxxxxxxxxx>smallRNA(si3)          xxxxxxxxxxxxxxxx>smallRNA(s)<xxxxxxxxxxxxxxxxxxxxxxxsmallRNA(se3)         xxxxxxxxxxxxxxxx>smallRNA(s) <xxxxxxxxxxxxxxxxxxxxxxxsmallRNA(si3)        xxxxxxxxxxxxxxxx>smallRNA(s)  xxxxxxxxxxxxxxxx>smallRNA(s)       <xxxxxxxxxxxxxxxxxxxxxxxsmallRNA(fl3)--------->MYB52(1)      <---------AtMYB61 xxxxxxxxxxxxxxxx>smallRNA(s)     xxxxxxxxxxxxxxxx>smallRNA(i)  <xxxxxxxxxxxxxxxxsmallRNA(s)    xxxxxxxxxxxxxxxx>smallRNA(s)   <xxxxxxxxxxxxxxxxsmallRNA(i)   <----------DOF2   <xxxxxxxxxxxxxxxxsmallRNA(i)   <---------DAG2    xxxxxxxxxxxxxxxxxxxxxx>smallRNA(fl3)  xxxxxxxxxxxxxxxxxxxxxxx>smallRNA(le3) --------->ANAC58  <xxxxxxxxxxxxxxxxsmallRNA(i)    <xxxxxxxxxxxxxxxxsmallRNA(i)  xxxxxxxxxxxxxxxxxxxxx>smallRNA(si3) <xxxxxxxxxxxxxxxxsmallRNA(s)  xxxxxxxxxxxxxxxx>smallRNA(s)    <------NtERF2 <xxxxxxxxxxxxxxxxsmallRNA(i)     --------->At4g35610 xxxxxxxxxxxxxxxxxxxxxxx>smallRNA(i2)xxxxxxxxxxxxxxxx>smallRNA(i) <xxxxxxxxxxxxxxxxsmallRNA(s)    <xxxxxxxxxxxxxxxxsmallRNA(i) xxxxxxxxxxxxxxxxxxxxx>smallRNA(si3) <xxxxxxxxxxxxxxxxxxxxxxxsmallRNA(fl3) xxxxxxxxxxxxxxxx>smallRNA(i)    <---------ATERF1(1) xxxxxxxxxxxxxxxx>smallRNA(s)    ------>NtERF2xxxxxxxxxxxxxxxxxxxxxx>smallRNA(fl3) xxxxxxxxxxxxxxxsmallRNA(s)    xxxxxxxxxxxxxxxxxxxxxxx>smallRNA(fl3) xxxxxxxxxxxxxxxxxxxxx>smallRNA(fl3) xxxxxxxxxxxxxxxx>smallRNA(s) xxxxxxxxxxxxxx>smallRNA(i)    --------->ATERF1(1)                              <----------DOF2 xxxxxxxxxxxxxx>smallRNA(s)    <xxxxxxxxxxxxxxxxsmallRNA(i)                    ------>ZmHOX2a(2) xxxxxxxxxxxx>smallRNA(i)    <---------ETT(2)xxxxxxxxxxxxxxxxxxxxxxx>smallRNA(fl3) xxxxxxxxxxxxxsmallRNA(i)    --------->ETT(2)xxxxxxxxxxxxxxxxxxxxxx>smallRNA(le3)   <---------HSFB2a(2) xxxxxxxxxxxsmallRNA(fl3)xxxxxxxxxxxxxxxx>smallRNA(i)                        --------->ARR11(3) xxxsmallRNA(i)      <xxxxxxxxxxxxxxxxsmallRNA(s)                            <---------ARR14(2) xxsmallRNA(i)      <---------MYB46(3)<-----------RAV1(2)                    <---------ARR11(3) xxsmallRNA(s)     <---------TOE2(2)xxxxxxxxxxxxxxxx>smallRNA(i)             --------->ARR14(2) xsmallRNA(i) <-----------HVH21<------NtERF2<xxxxxxxxxxxxxxxxsmallRNA(i)     <---------AGP1 ----MYB52(2)<-----------RAV1(1)--------->DEAR3(1)xxxxxxxxxxxxxxxxxxxxxx>smallRNA(fl3) xxxxxxxxxxxxxxxxxxxxx>smallRNA(se3)<xxxxxxxxxxxxxxxxsmallRNA(s)            <---------CCA1(2) ->MYB52(1)xxxxxxxxxxxxxxxxxxxxxxx>smallRNA(fl3)--------->MYB52(1)        --------->ALFIN1 xxxxxxxxxxxxxxx>smallRNA(si3)<xxxxxxxxxxxxxxxxsmallRNA(i)    <xxxxxxxxxxxxxxxxsmallRNA(i) xxxxxxxxxxxxx>smallRNA(s)<xxxxxxxxxxxxxxxxsmallRNA(i)        ------------>MYB.PH3(1)             --- xxxxxxxxxxxxx>smallRNA(fl3)<xxxxxxxxxxxxxxxxxxxxxxxsmallRNA(si3)     <-----------RAV1(2)     ------- xxxxxxsmallRNA(i) <---------TOE1(2)----------->RAV1(1) <xxxxxxxxxxxxxxxxsmallRNA(i)--------->HSFB2a(2)   aacaacttttggtcgctgtcgctggtttcagtcgccagcgacaggcaaacgaacagggcctaagaaacagttacaggtggatctttttagaagtaagaac  17513800                           <----------DOF2               <---------ARR14(2)                                                ------->GAMYB               --------->ARR14(2)                                              ------>MYB46(1)            <---------------AGL15                                              -------->P   ---------           <-----------------AGL3                                              ------>MYB83 <------NtERF2           <-----------------AGL2                                             --------->MYB55(1)           ----------------->AGL2                                            <---------MYB55(2)           <-----------------AGL1                                            <---------MYB111(2)           <-----------------AG                                              --------->AtMYB61           ----------------->AGL1                                    ------>ZmHOX2a(1) --------->ALFIN1           ----------------->AGL3                        --------->ZAT18     <---------ALFIN1 -------      --------------->AtSPL8                             <---------ZAT18     --------->DEAR3(1)------    <-----------GT1   <---------WOX13(1)                 <---------ZAT14     <---------MYB46(2)<----- -------->GT1  <---------GLK1(2)            --------->YAB1 --------->GLK1(1) --------->MYB46(3)------ -->ARR11(3)--------------->AGL15    --------->AtLEC2    --------->ZAT14     <---------MYB111(1)   tggtatatacagtaccagatttggattggcttcaaggccttgcaaaacataatcccaagtgaactccagtcctcgagcaccaacccagagaggtgccaat  17513900                                                                                            ------>ZmHOX2a(2)                                                                                            =========                                                                                           ==========                                                                                           <---------RVE1(1)                                                                                           <------ZmHOX2a(2)                                                                                          --------->ARR11(3)           <---------ARR14(2)                                                             --------->ARR14(2)           --------->ARR14(2)                                                             --------->AGP1           --------->GLK1(2)                                                              <---------AGP1          <---------GLK1(2)                                           <---------ARR11(3)  <---------ARR11(3)       xxxxxxxxxxxxxxxxxxx>smallRNA(se3)                              --------->ARR11(3)  <---------ARR14(2)     xxxxxxxxxxxxxxxxxxxx>smallRNA(se3)                              <---------CCA1(2)   <---------CCA1(2) -------->AGL1                                             <---------AHL20(2)           ----------->ARR10 -->WOX13(1)               ----------->RAV1(2)            --------->AHL20(1)        --------->ZAT6 --->GLK1(2)            <---------ALFIN1                  <---------AHL20(2)   --------->YAB1<------- ----ARR14(2)  --------->LBD16           <----------ID1   <---------AHL20(1)  <---------AHL20(2) --->ARR14(2)<---------LBD16 *TSS     ---------->DOF2     --------->AHL20(2) --------->AHL20(2)   ctgtgcaaaacagaatccgcgaatgcccaccctgatacaaaaaagaacaaatctctcaaataaaatttgatatatcttatataataagactagatctttt  17514000                                                                                        <---------AHL20(2)                                                                                    ----------->GT1                <---------ICU4                                                 <---------AHL20(2)                --------->YAB1                      <---------ARR11(3)      <---------AHL20(1)               <---------YAB1                       --------->ARR11(3)      --------->AHL20(1)      --------->GLK1(1)                            <---------CCA1(2)       --------->AHL20(2)      --------->At4g35610                --------->AHL20(2)             <---------AHL20(2)          -    <------ZmHOX2a(1)                   --------->AHL20(1)             --------->AHL20(2)           < ==========HOX2a_HOX2a                  <---------AHL20(1)             <---------AHL20(2)      xxxxxx ==========HOX2a_HOX2a              <---------AHL20(2)              --------->WOX13(1)  --------->AHL20(2) ---DOF2     --------->YAB1        --------->AHL20(2)           <-----------GT1--------->AHL20(2)  --   ttgtaaggagctctattatcatgacatttgctcaacatttaatatatatactaatatctcaacatttaaccaattaaatatataaatagtttaaatacaa  17514100                                                                                                    <                  --------->ARR11(3)                                                           <-----               <---------AHL20(2)                                                             -------              --------->YAB1                    <---------YAB1                               <-------           <---------ZAT6                     <-----------GT1                             --------->AHL20(2) --------->AHL20(2) --------->TOE2(3)        --------->AHL20(2)                         --------->ARR11(3) -------->AHL20(1)--------->GLK1(2)          <---------AHL20(2)                         <---------ARR11(3) ---------AHL20(1)<---------ARR11(3)     --------->AHL20(2)       --------->HSFB2a(2)--------->YAB1-- xxxxxxxxxxxxxxxxx>smallRNA(si3)         <---------AHL20(2)    <----------DOF2    --------->HSFB2a(2) ------->AHL20(2)--------->RVE1(1)<-----------GT1      --------->ZAT6             <---------HSFB2a(2)   aatatatatagtagtataaaaatcttagaatttgtttttctatataatttatcatttacactaagcttttagaattagttttttctataagatttattat  17514200                --------->ARR14(2)                <---------ARR14(2)                --------->ARR11(3)                <---------ARR11(3)                <---------GLK1(2)                --------->ARR11(1)           <---------AHL20(2)       <---------AHL20(2)     --------->AHL20(2)    --------->AHL20(1)                                                          <---------DAG2    <---------AHL20(1)<---------MYB52(1)                                     <-----------GT1 ---------AHL20(2)  <-----------RAV1(1)<---------DAG2                 <-----------GT1 ----AHL20(2)<xxxxxxxxxxxxxxxxxxxxxxxsmallRNA(si3)                --------->AHL20(2)             ---- -->AHL20(2)---------->DOF2    <------ZmHOX2a(1)                  <---------AHL20(2)      ----------- --YAB1--------->AHL20(2)    <---------TOE2(3)                    <---------AHL20(1)    <----------DOF2 ------->AHL20(2)--------->ARR14(1)    <----------DOF2            --------->AHL20(1) <-----------GT1   atataatatatatataaagatactgttgtttgaggaatgcccttttccacttctaacaatatttgtattttattacatttaaccttttaactttgtaaaa  17514300                <---------AHL20(2)               --------->AHL20(2)                                                               -----            ----------->GT1                 ---------->ID1<---------ARR11(3)                ---------    <---------YAB1                     <---------AHL20(1)--------->RVE1(1)       <---------AHL20(2)    <---------AHL20(2)                 <---------AHL20(2)--------->CCA1(1)       --------->AHL20(2)   <---------AHL20(2)                <---------YAB1    --------->YAB1           --------->YAB1 <-----   --------->AHL20(2)  --------->GLK1(2)<---------YAB1 --------->AHL20(2)      <---------YAB1 -------   --------->AHL20(1)  --------->ARR14(2)   <-----------GT1         <----------DOF2    --------->ANAC46   <---------AHL20(1)  <---------ARR14(2)  <-----------GT1--------->ARR11(3)<---------YAB1  <-------- ------->GT1--------->ATHB12      <---------AHL20(2)  <---------ATHB51      <---------AHL20(2)<------ >GT1      <---------YAB1         <---------YAB1      <---------ATHB12     --------->AHL20(2)--------   tgtaatataatagatgattaaatcaaatctgtattttttattatttttcccttccaataatatctctattctttcatttttattaaaatacaccatgatc  17514400  Previous    Next  AGI:  At1g47625.1    Description:  expressed protein, this may be a pseudogene. No suitable start codon was identified. Range:  from: 17513250    to: 17513929    Orientation: Reverse Links:  TAIR  MIPS      Please cite the corresponding publications when using AthaMap.
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