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Chromosome 1
Chromosome 2
Chromosome 3
Chromosome 4
Chromosome 5
Position
Exon region
Intron region
UTR region
AGI
% Restriction to highly conserved TF binding sites (0-100)
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1 10 20 30 40 50 60 70 80 90 100
----------->
RAV1(1)
------>
MYB46(1)
--------->
ANAC58
--------->
ANAC46
<---------
GLK1(1)
--------->
ANAC58
<---------
ZAT2
--------->
LBD16
--------->
ANAC58
--------->
ZAT2
<---------
HSFB2a(2)
--------->
ANAC46
--------->
At4g35610
--------->
HSFB2a(2)
---------->
DOF2
<---------
At4g35610
<---------
ANAC46
<---
<---------
YAB1
------>
NtERF2
<---------
LBD16
--------->
WRKY38(1)
--------->
YAB1
<------
NtERF2
------>
MYB83
--------->
GLK1(1)
<---
---
ZmHOX2a(1)
<---------
ATHB12
--------->
ATERF1(1)
<---------
LBD16
--------->
WRKY12
<---
-
HVH21
----------->
HVH21
--------->
ZAT14
--------->
ANAC58
--------->
ARR14(2)
<----------
DOF2
gatgaagagttgacaaatgataaaagccattac
cagagaagtcgccagctcaaacccaacaattttcgggaaatgccatccattgactctctttagatag
17513500
<-------
MYC2
<-------
MYC3
------->
MYC3
<-------
MYC4
--------->
ZAT18
--------->
ZAT14
<---------
ZAT18
xx
<---------
ZAT14
xx
--------->
RAP2.6(3)
xxx
<---------
YAB1
xxxxx
------>
ZmHOX2a(2)
<---------
ICU4
<---------
YAB1
<---------
YAB1
xxxxxx
<---------
YAB1
--------->
YAB1
<---------
ARR14(2)
----------->
RAV1(2)
-------
------
ANAC58
--------->
ICU4
------->
MYC3
----------->
GT1
---------
------
ANAC46
<---------
ANAC46
<-------
MYC3
--------->
ARR11(3)
--------->
TOE2(3)
xxx
------
ANAC58
<-----------
RAV1(1)
------->
MYC2
<---------
ARR11(3)
<---------
TOE2(3)
<xxxx
cttgtgatcgaaggcattgttgcgatgatgactgcacatgtgtatatgatagagatattgtgaatacctgagtttgacataaacgttatatggaagtaag
17513600
xxxxxxxxxxxxxxxx>
smallRNA(s)
<xxxxxxxxxxxxxxxx
smallRNA(s)
<-----------
RAV1(1)
<xxxxxxxxxxxxxxxx
smallRNA(i)
xxxxxxxxxxxxxxxx>
smallRNA(s)
xxxxxxxxxxxxxxxx>
smallRNA(s)
xxxxxxxxxxxxxxxx>
smallRNA(s)
------>
NtERF2
<xxxxxxxxxxxxxxxx
smallRNA(s)
xxxxxxxxxxxxxxxx>
smallRNA(i)
<---------
ETT(2)
--------->
ETT(2)
<xxxxxxxxxxxxxxxx
smallRNA(i)
<xxxxxxxxxxxxxxxx
smallRNA(s)
<xxxxxxxxxxxxxxxx
smallRNA(s)
xxxxxxxxxxxxxxxxxxxxxxx>
smallRNA(fl3)
<xxxxxxxxxxxxxxxx
smallRNA(i)
------>
NtERF2
<---------
ATERF1(1)
<---------
DEAR3(1)
xxxxxxxxxxxxxxxx>
smallRNA(s)
<x
--------->
ATERF1(1)
xx
<---------
At4g35610
xx
<---------
MYB46(3)
xx
<---------
DEAR3(1)
xxxx
<---------
ARR14(2)
<-----------
HVH21
<xxx
xxxxxxxxxxxxxxxx>
smallRNA(i)
<xxxxxxxxxxxxxxxx
smallRNA(s)
<xxxxxxxxxxx
<---------
TOE1(2)
<xxxxxxxxxxxxxxxx
smallRNA(s)
<xxxxxxxxxxxxx
<-----------
HVH21
<xxxxxxxxxxxxxxxx
smallRNA(s)
<---------
YAB1
<xxxxxxxxxxxxxx
<-----------
RAV1(1)
<-----------
HVH21
<xxxxxxxxxxxxxxxx
smallRNA(s)
<xxxxxxxxxxxxxx
<---------
ANAC58
<xxxxxxxxxxxxxxxxxxxx
smallRNA(le3)
----------->
RAV1(1)
--------->
MYB52(2)
<---------
ANAC58
<------
NtERF2
<----------
DOF2
<xxxxxxxxxxxxxxx
<---------
MYB52(1)
--------->
ARR14(2)
<---------
MYB46(3)
<xxxxxxxxxxxxxxxxxxxxxxx
smallRNA(fl3)
xxxxxxxxxxxxxx>
smallRNA(s)
<xxxxxxxxxxxxxxxx
smallRNA(s)
xxxxxxxxxxxxxxxx>
smallRNA(s)
<-----
xxxxxxxxxxxxxx>
smallRNA(i)
<---------
RAP2.6(2)
xxxxxxxxxxxxxxxx>
smallRNA(i)
----------->
HVH21
xxxxxxxxxxxxx>
smallRNA(i)
<---------
ANAC58
<xxxxxxxxxxxxxxxx
smallRNA(i)
--------->
TOE1(2)
xx
xxxxxxxxxxx>
smallRNA(i)
xxxxxxxxxxxxxxxxxxxxxxx>
smallRNA(fl3)
--------->
At4g35610
--------
xxxxxxxxxx>
smallRNA(i)
<------
ZmHOX2a(2)
<---------
DEAR3(1)
xxxxxxxxxxxxxxxx>
smallRNA(s)
xxxxxxxx
--->
DOF2
<---------
ANAC58
--------->
ARR11(3)
<xxxxxxxxxxxxxxxx
smallRNA(s)
--------->
MYB46(3)
xxx
-------------->
TaNAC69(2)
<---------
ARR11(3)
--------->
At4g35610
<xxxxxxxxxxxxxxxxxxxxxx
smallRNA(fl3)
xxxxxxxxxxxxx>
smallRNA(s)
--------->
LBD16
<xxxxxxxxxxxxxxxx
smallRNA(i)
------>
ZmHOX2a(2)
xxxxxxxxxx
xxxxxxxxxxxx
smallRNA(i)
------>
ZmHOX2a(2)
<---------
MYB46(3)
xxxxxxxxxxxxxxxx>
smallRNA(s)
<xxxxxxxxxx
gccctgttcgtttccttgtcgctggatccagagatattgcggtcgctggtcgctggcgactgtcgctacttttgatcgctgaaccagcgacagacaaacg
17513700
<---------
MYB52(2)
xxxxxxxxxxxxxxxx>
smallRNA(s)
--------->
AtLEC2
xxxxxxxxxxxxxxxx>
smallRNA(i)
<xxxxxxxxxxxxxxxx
smallRNA(s)
<xxxxxxxxxxxxxxxx
smallRNA(i)
<---------
At4g35610
--------->
ANAC58
--------->
At4g35610
xxxxxxxxxxxxxxxxxxxxxx>
smallRNA(fl3)
xxxxxxxxxxxxxxxxxxxxxxxx>
smallRNA(si3)
<---------
DEAR3(1)
----------->
HVH21
xxxxxxxxxxxxxxxxxxxxxxx>
smallRNA(si3)
xxxxxxxxxxxxxxxx>
smallRNA(s)
<xxxxxxxxxxxxxxxxxxxxxxx
smallRNA(se3)
xxxxxxxxxxxxxxxx>
smallRNA(s)
<xxxxxxxxxxxxxxxxxxxxxxx
smallRNA(si3)
xxxxxxxxxxxxxxxx>
smallRNA(s)
xxxxxxxxxxxxxxxx>
smallRNA(s)
<xxxxxxxxxxxxxxxxxxxxxxx
smallRNA(fl3)
--------->
MYB52(1)
<---------
AtMYB61
xxxxxxxxxxxxxxxx>
smallRNA(s)
xxxxxxxxxxxxxxxx>
smallRNA(i)
<xxxxxxxxxxxxxxxx
smallRNA(s)
xxxxxxxxxxxxxxxx>
smallRNA(s)
<xxxxxxxxxxxxxxxx
smallRNA(i)
<----------
DOF2
<xxxxxxxxxxxxxxxx
smallRNA(i)
<---------
DAG2
xxxxxxxxxxxxxxxxxxxxxx>
smallRNA(fl3)
xxxxxxxxxxxxxxxxxxxxxxx>
smallRNA(le3)
--------->
ANAC58
<xxxxxxxxxxxxxxxx
smallRNA(i)
<xxxxxxxxxxxxxxxx
smallRNA(i)
xxxxxxxxxxxxxxxxxxxxx>
smallRNA(si3)
<xxxxxxxxxxxxxxxx
smallRNA(s)
xxxxxxxxxxxxxxxx>
smallRNA(s)
<------
NtERF2
<xxxxxxxxxxxxxxxx
smallRNA(i)
--------->
At4g35610
xxxxxxxxxxxxxxxxxxxxxxx>
smallRNA(i2)
xxxxxxxxxxxxxxxx>
smallRNA(i)
<xxxxxxxxxxxxxxxx
smallRNA(s)
<xxxxxxxxxxxxxxxx
smallRNA(i)
xxxxxxxxxxxxxxxxxxxxx>
smallRNA(si3)
<xxxxxxxxxxxxxxxxxxxxxxx
smallRNA(fl3)
xxxxxxxxxxxxxxxx>
smallRNA(i)
<---------
ATERF1(1)
xxxxxxxxxxxxxxxx>
smallRNA(s)
------>
NtERF2
xxxxxxxxxxxxxxxxxxxxxx>
smallRNA(fl3)
xxxxxxxxxxxxxxx
smallRNA(s)
xxxxxxxxxxxxxxxxxxxxxxx>
smallRNA(fl3)
xxxxxxxxxxxxxxxxxxxxx>
smallRNA(fl3)
xxxxxxxxxxxxxxxx>
smallRNA(s)
xxxxxxxxxxxxxx>
smallRNA(i)
--------->
ATERF1(1)
<----------
DOF2
xxxxxxxxxxxxxx>
smallRNA(s)
<xxxxxxxxxxxxxxxx
smallRNA(i)
------>
ZmHOX2a(2)
xxxxxxxxxxxx>
smallRNA(i)
<---------
ETT(2)
xxxxxxxxxxxxxxxxxxxxxxx>
smallRNA(fl3)
xxxxxxxxxxxxx
smallRNA(i)
--------->
ETT(2)
xxxxxxxxxxxxxxxxxxxxxx>
smallRNA(le3)
<---------
HSFB2a(2)
xxxxxxxxxxx
smallRNA(fl3)
xxxxxxxxxxxxxxxx>
smallRNA(i)
--------->
ARR11(3)
xxx
smallRNA(i)
<xxxxxxxxxxxxxxxx
smallRNA(s)
<---------
ARR14(2)
xx
smallRNA(i)
<---------
MYB46(3)
<-----------
RAV1(2)
<---------
ARR11(3)
xx
smallRNA(s)
<---------
TOE2(2)
xxxxxxxxxxxxxxxx>
smallRNA(i)
--------->
ARR14(2)
x
smallRNA(i)
<-----------
HVH21
<------
NtERF2
<xxxxxxxxxxxxxxxx
smallRNA(i)
<---------
AGP1
----
MYB52(2)
<-----------
RAV1(1)
--------->
DEAR3(1)
xxxxxxxxxxxxxxxxxxxxxx>
smallRNA(fl3)
xxxxxxxxxxxxxxxxxxxxx>
smallRNA(se3)
<xxxxxxxxxxxxxxxx
smallRNA(s)
<---------
CCA1(2)
->
MYB52(1)
xxxxxxxxxxxxxxxxxxxxxxx>
smallRNA(fl3)
--------->
MYB52(1)
--------->
ALFIN1
xxxxxxxxxxxxxxx>
smallRNA(si3)
<xxxxxxxxxxxxxxxx
smallRNA(i)
<xxxxxxxxxxxxxxxx
smallRNA(i)
xxxxxxxxxxxxx>
smallRNA(s)
<xxxxxxxxxxxxxxxx
smallRNA(i)
------------>
MYB.PH3(1)
---
xxxxxxxxxxxxx>
smallRNA(fl3)
<xxxxxxxxxxxxxxxxxxxxxxx
smallRNA(si3)
<-----------
RAV1(2)
-------
xxxxxx
smallRNA(i)
<---------
TOE1(2)
----------->
RAV1(1)
<xxxxxxxxxxxxxxxx
smallRNA(i)
--------->
HSFB2a(2)
aacaacttttggtcg
ctgtcgctggtttcagtcgccagcgacaggcaaacgaacagggcctaagaaacagttacaggtggatctttttagaagtaagaac
17513800
<----------
DOF2
<---------
ARR14(2)
------->
GAMYB
--------->
ARR14(2)
------>
MYB46(1)
<---------------
AGL15
-------->
P
---------
<-----------------
AGL3
------>
MYB83
<------
NtERF2
<-----------------
AGL2
--------->
MYB55(1)
----------------->
AGL2
<---------
MYB55(2)
<-----------------
AGL1
<---------
MYB111(2)
<-----------------
AG
--------->
AtMYB61
----------------->
AGL1
------>
ZmHOX2a(1)
--------->
ALFIN1
----------------->
AGL3
--------->
ZAT18
<---------
ALFIN1
-------
--------------->
AtSPL8
<---------
ZAT18
--------->
DEAR3(1)
------
<-----------
GT1
<---------
WOX13(1)
<---------
ZAT14
<---------
MYB46(2)
<-----
-------->
GT1
<---------
GLK1(2)
--------->
YAB1
--------->
GLK1(1)
--------->
MYB46(3)
------
-->
ARR11(3)
--------------->
AGL15
--------->
AtLEC2
--------->
ZAT14
<---------
MYB111(1)
tggtatatacagtac
cagatttggattggcttcaaggccttgcaaaacataatcccaagtgaactccagtcctcgagcaccaacccagagaggtgccaat
17513900
------>
ZmHOX2a(2)
=========
==========
<---------
RVE1(1)
<------
ZmHOX2a(2)
--------->
ARR11(3)
<---------
ARR14(2)
--------->
ARR14(2)
--------->
ARR14(2)
--------->
AGP1
--------->
GLK1(2)
<---------
AGP1
<---------
GLK1(2)
<---------
ARR11(3)
<---------
ARR11(3)
xxxxxxxxxxxxxxxxxxx>
smallRNA(se3)
--------->
ARR11(3)
<---------
ARR14(2)
xxxxxxxxxxxxxxxxxxxx>
smallRNA(se3)
<---------
CCA1(2)
<---------
CCA1(2)
-------->
AGL1
<---------
AHL20(2)
----------->
ARR10
-->
WOX13(1)
----------->
RAV1(2)
--------->
AHL20(1)
--------->
ZAT6
--->
GLK1(2)
<---------
ALFIN1
<---------
AHL20(2)
--------->
YAB1
<-------
----
ARR14(2)
--------->
LBD16
<----------
ID1
<---------
AHL20(1)
<---------
AHL20(2)
--->
ARR14(2)
<---------
LBD16
*
TSS
---------->
DOF2
--------->
AHL20(2)
--------->
AHL20(2)
ctgtgcaaaacagaatccgcgaatgccca
ccctgatacaaaaaagaacaaatctctcaaataaaatttgatatatcttatataataagactagatctttt
17514000
<---------
AHL20(2)
----------->
GT1
<---------
ICU4
<---------
AHL20(2)
--------->
YAB1
<---------
ARR11(3)
<---------
AHL20(1)
<---------
YAB1
--------->
ARR11(3)
--------->
AHL20(1)
--------->
GLK1(1)
<---------
CCA1(2)
--------->
AHL20(2)
--------->
At4g35610
--------->
AHL20(2)
<---------
AHL20(2)
-
<------
ZmHOX2a(1)
--------->
AHL20(1)
--------->
AHL20(2)
<
==========
HOX2a_HOX2a
<---------
AHL20(1)
<---------
AHL20(2)
xxxxxx
==========
HOX2a_HOX2a
<---------
AHL20(2)
--------->
WOX13(1)
--------->
AHL20(2)
---
DOF2
--------->
YAB1
--------->
AHL20(2)
<-----------
GT1
--------->
AHL20(2)
--
ttgtaaggagctctattatcatgacatttgctcaacatttaatatatatactaatatctcaacatttaaccaattaaatatataaatagtttaaatacaa
17514100
<
--------->
ARR11(3)
<-----
<---------
AHL20(2)
-------
--------->
YAB1
<---------
YAB1
<-------
<---------
ZAT6
<-----------
GT1
--------->
AHL20(2)
--------->
AHL20(2)
--------->
TOE2(3)
--------->
AHL20(2)
--------->
ARR11(3)
-------->
AHL20(1)
--------->
GLK1(2)
<---------
AHL20(2)
<---------
ARR11(3)
---------
AHL20(1)
<---------
ARR11(3)
--------->
AHL20(2)
--------->
HSFB2a(2)
--------->
YAB1
--
xxxxxxxxxxxxxxxxx>
smallRNA(si3)
<---------
AHL20(2)
<----------
DOF2
--------->
HSFB2a(2)
------->
AHL20(2)
--------->
RVE1(1)
<-----------
GT1
--------->
ZAT6
<---------
HSFB2a(2)
aatatatatagtagtataaaaatcttagaatttgtttttctatataatttatcatttacactaagcttttagaattagttttttctataagatttattat
17514200
--------->
ARR14(2)
<---------
ARR14(2)
--------->
ARR11(3)
<---------
ARR11(3)
<---------
GLK1(2)
--------->
ARR11(1)
<---------
AHL20(2)
<---------
AHL20(2)
--------->
AHL20(2)
--------->
AHL20(1)
<---------
DAG2
<---------
AHL20(1)
<---------
MYB52(1)
<-----------
GT1
---------
AHL20(2)
<-----------
RAV1(1)
<---------
DAG2
<-----------
GT1
----
AHL20(2)
<xxxxxxxxxxxxxxxxxxxxxxx
smallRNA(si3)
--------->
AHL20(2)
----
-->
AHL20(2)
---------->
DOF2
<------
ZmHOX2a(1)
<---------
AHL20(2)
-----------
--
YAB1
--------->
AHL20(2)
<---------
TOE2(3)
<---------
AHL20(1)
<----------
DOF2
------->
AHL20(2)
--------->
ARR14(1)
<----------
DOF2
--------->
AHL20(1)
<-----------
GT1
atataatatatatataaagatactgttgtttgaggaatgcccttttccacttctaacaatatttgtattttattacatttaaccttttaactttgtaaaa
17514300
<---------
AHL20(2)
--------->
AHL20(2)
-----
----------->
GT1
---------->
ID1
<---------
ARR11(3)
---------
<---------
YAB1
<---------
AHL20(1)
--------->
RVE1(1)
<---------
AHL20(2)
<---------
AHL20(2)
<---------
AHL20(2)
--------->
CCA1(1)
--------->
AHL20(2)
<---------
AHL20(2)
<---------
YAB1
--------->
YAB1
--------->
YAB1
<-----
--------->
AHL20(2)
--------->
GLK1(2)
<---------
YAB1
--------->
AHL20(2)
<---------
YAB1
-------
--------->
AHL20(1)
--------->
ARR14(2)
<-----------
GT1
<----------
DOF2
--------->
ANAC46
<---------
AHL20(1)
<---------
ARR14(2)
<-----------
GT1
--------->
ARR11(3)
<---------
YAB1
<--------
------->
GT1
--------->
ATHB12
<---------
AHL20(2)
<---------
ATHB51
<---------
AHL20(2)
<------
>
GT1
<---------
YAB1
<---------
YAB1
<---------
ATHB12
--------->
AHL20(2)
--------
tgtaatataatagatgattaaatcaaatctgtattttttattatttttcccttccaataatatctctattctttcatttttattaaaatacaccatgatc
17514400
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AGI:
At1g47625.1
Description:
expressed protein, this may be a pseudogene. No suitable start codon was identified.
Range:
from: 17513250
to: 17513929
Orientation: Reverse
Links:
TAIR
MIPS
Please cite the corresponding
publications
when using AthaMap.